Cathelicidins As Novel Therapeutic Antivirals For Dengue Infection

Lead Research Organisation: Edinburgh Napier University
Department Name: School of Applied Science

Abstract

A significant challenge faced by modern society is the lack of therapeutics for a large number of infections, particularly those that are endemic or widely spread in developing countries. Dengue is one such infection which is endemic in Indonesia - it is transmitted by mosquitoes and infects approximately 100 million people per year, potentially causing death in the most severe cases. There is no treatment for dengue fever and given the spread of the disease around the globe, new treatment approaches are urgently required. We propose that small molecules present in the immune systems of humans and animals could be modified and exploited to fight this infection.

Our immune system contains substances that are some of the most complex and effective molecules to defeat infections. One of the ways in which the immune system can destroy invading pathogens is by the production of small peptides called cathelicidins. These peptides are present in many cells, fluids and tissues. We, and others, have shown cathelicidins to have powerful antiviral potential. They can play a key role in eliminating pathogens and controlling inflammation. We have shown that, in their natural state, cathelicidins can kill viruses such as influenza virus just as effectively as common antiviral drugs. One study has also shown that cathelicidins can kill Dengue virus, and may play in role in the immune response against this infection. Thus, we believe that developing new antimicrobial medicines based on the structure of cathelicidins offers promise as a novel way to fight pathogens such as dengue.

This study aims to understand how cathelicidins contribute to the immune response against dengue virus, and to find ways of harnessing this powerful activity to develop a treatment for dengue infection. In addition, given that cathelicidins are naturally occurring antiviral molecules in the body, stimulating their production through substances such as Vitamin D, which is incredibly effective at increasing cathelicidin release, may also be an effective way of defeating the infection. We will use both cells grown in the lab, and mouse models, to examine how cathelicidins, and stimulators of cathelicidin production, like Vitamin D, can be used to treat dengue infection. We will also study whether dengue stimulates or prevents cathelicidin release, and will also use samples from human patients who have contracted mild or severe dengue, and measure cathelicidin concentrations in their blood. We believe we can then examine the association between cathelicidin status, and severity of disease.

Furthermore, we will use cell models to understand how cathelicidins could be used to treat dengue infection, not just through their antiviral activity towards the virus, but by suppressing virus replication in the cells it infects. We know that dengue can hijack normal cell processes to replicate. One process, called autophagy, is required by healthy cells to recycle old or damaged cell proteins, so that the cell can break them down in order to survive. When dengue virus infects a cell, it hijacks the autophagy system, and uses it to replicate and release more virus, spreading to other cells. We will examine whether cathelicidins can prevent the virus from hijacking the autophagy machinery. We know that cathelicidins can induce a controlled form of cell death called apoptosis, and that in instances of infection, this can be beneficial in stopping infected cells from being used to generate more infectious virus particles. Thus we believe that by using cathelicidins to shift the balance from autophagy to apoptosis in dengue infection, this will be an effective and targeted way of treating this virus.

This project represents an unprecedented opportunity to gain a better understanding of how key molecules in the immune system can be harnessed to treat viruses, like dengue, that currently do not have an effective treatment.

Technical Summary

Characterisation of the antiviral and immunomodulatory activity of the cathelicidin family of host defence peptides in Dengue infection may represent a novel approach that would inform the development of highly effective antiviral therapeutics. This study will characterise the impact of dengue infection on cathelicidin expression in vitro and in samples from patients diagnosed with mild or severe dengue fever, associating cathelicidin status with inflammatory markers and disease severity. Given that dengue virus is known to utilise autophagy induction to facilitate replication, and that cathelicidins are known to have the potential to induce apoptosis in infected cells, we aim to assess whether cathelicidin treatment can shift the balance from autophagy to apoptosis in dengue infected cells, as a way of halting viral replication and facilitating infected cell clearance. We will also use in vivo and in vitro models of dengue infection to provide a comparative assessment of the potential for exogenous peptide treatment, and upregulation of endogenous peptide, to be used as adjunct therapeutic approaches for dengue infection.

Key Research Deliverables

1. This study will provide a full translational characterisation of the impact of dengue infection on cathelicidin expression, in vitro and will assess cathelicidin and inflammatory status in patients diagnosed with mild or severe dengue fever.
2. We will provide a mechanistic characterisation of the immunomodulatory roles of cathelicidins in the context of the modulation of cell autophagy/apoptosis pathways in dengue infection.
3. We will provide in vitro and in vivo characterisation of the potential for either exogenous cathelicidin treatment, or vitamin D/butyrate mediated endogenous cathelicidin production to be used as an adjunct therapeutic approach for dengue infection.

Planned Impact

This study is designed to characterise the potential for cathelicidins, a key component of the innate immune system, to be used as a novel therapeutic approach dengue virus. The work will provide a understanding of the pluripotent roles that cathelicidins can play in the response to dengue infection, will illuminate a novel approach for limiting dengue virus replication in the context of cathelicidin-mediated modulation of cell death/survival pathways, and assess the potential for stimulation of endogenous peptide production in the context of an adjunct therapeutic approach for dengue infection.

The healthcare burden and mortality associated with mild and severe dengue fever, particularly in developing countries and countries in receipt of ODA, has substantial implications, both financially, and in terms of global population morbidity/mortality. With over 100 million dengue infections estimated by the WHO each year, and with no effective therapeutic approach for this infection, the impact of the work proposed is extensive. Our work will map the effects of dengue viral infection on a key host defence peptide of the immune system, providing comprehensive characterisation of host defence mechanisms involved, and allowing us mechanistic insight into the design of novel peptide therapeutics. We believe that our strategy will not only provide insight into treating the pathogen used herein, but also for a number of other viral pathogens who employ autophagy to facilitate replication.

Furthermore, our work will inform a roadmap for the design and synthesis of novel peptide approaches for treating dengue infection. Our line-of-sight approach using primary cell in vitro models and in vivo models will allow us to conduct basic biological characterisation of a highly translational nature which is strongly emphasised through the use of primary clinical samples from patients who have experienced mild and severe dengue infection, and the use of translational in vivo infection models for efficacy assessment of the proposed peptide treatments and cathelicidin inducers.

The postdoctoral researcher who will be employed on this project will be supported to give them the best chance of developing as an independent researcher, and will also be given the experience of living and working in a centre of excellence for dengue research in Jakarta, seeing first hand the impact of dengue fever on the lives of those it affects. They will generate new skills both in vitro and in vivo and be able to publish high quality papers in journals of international esteem. More broadly, the potential for knowledge exchange between the UK and Indonesia that will be generated as part of this study in terms of expertise in Dengue viral infection models will be of key importance going forward.

The advances made in this study will impact upon a number of groups around the world who are focused upon elucidating novel pathways for the use of peptide-based therapeutics for treating viral infections such as dengue. In the context of pushing forward the global agenda on the development of therapeutics to address the fundamental challenge of vector borne infectious diseases, particularly in developing countries, this work will yield valuable information for future therapeutic design.

Publications

10 25 50
 
Description Dengue is an infection which is endemic in Indonesia - it is transmitted by mosquitoes and infects approximately 100 million people per year, potentially causing death in the most severe cases. There is no treatment for dengue fever and given the spread of the disease around the globe, new treatment approaches are urgently required. We are assessing the potential for small molecules present in the immune systems of humans and animals to be modified and exploited to fight this infection.

One of the ways in which the immune system can destroy invading pathogens is by the production of small peptides called cathelicidins. These peptides are present in many cells, fluids and tissues. We, and others, have shown cathelicidins to have powerful antiviral potential. They can play a key role in eliminating pathogens and controlling inflammation.

This study aims to understand how cathelicidins contribute to the immune response against dengue virus, and to find ways of harnessing this powerful activity to develop a treatment for dengue infection. In addition, given that cathelicidins are naturally occurring antiviral molecules in the body, stimulating their production through substances such as Vitamin D, which is incredibly effective at increasing cathelicidin release, may also be an effective way of defeating the infection.

Deliverable - provide a characterisation of dengue infection and cathelicidin status/expression
Status - our data indicates that cathelicidin production occurs very rapidly after infection with certain strains of dengue viruses (DENV-3 and DENV-4), gradually decreasing over a period of 24-48 hours. Other strains (DENV-1 and DENV-2) induce moderate cathelicidin responses but not to the same extent, and indeed, may actually decrease cathelicidin expression. Understanding whether cathelicidins are involved in the immune response to dengue will help us establish if they can be used as a therapeutic. We also have data to suggest that Cathelicidins can alter inflammatory signalling in dengue infection.

Deliverable - provide a characterisation of the role of cathelicidins in modulating cell death/survival pathways in context of dengue infection
Status - we have been assessing how cell survival and death can be affected by cathelicidins in viral infection. Our data indicates that cathelicidins can change a number of cellular pathways in relation to cell survival and death, and we are analysing of individual populations of cells treated with cathelicidins by a different techniques. We hope this will help us understand how the fate of cells can be altered during dengue infection and what cathelicidins could do to change this in a beneficial manner.

Deliverable - in vitro and in vivo characterisation of cathelicidins to act therapeutically in dengue infection
Status - our data indicates that cathelicidins have potent antiviral effects against dengue virus at physiological concentrations. This is also seen in modified peptides which are more resistant to degradation and is more stable. Reassuringly we do not see any effect when using a scrambled sequence peptide which tells us that the sequences of the peptide we are using is essential for antiviral activity. This is important as these peptides could potentially be modified in the future to develop new antiviral drugs.
Exploitation Route The development of a drug treatment for this virus would be of direct benefit to those who are at risk of contracting this infection. The project could therefore contribute to reducing the healthcare burden and associated morbidity and mortality of Dengue in the Indonesian population, with scope to expand peptide-based treatments to reduce the global burden associated with Dengue infection.
Sectors Pharmaceuticals and Medical Biotechnology

 
Description Impact around Gender Equality The core project team contains experienced and early career investigators from different genders and all have been involved in the conception, the design and the reporting of the experimental approaches. Furthermore, researchers of all genders based in the laboratories of the investigative team benefit from exposure to the work and the outcomes, through laboratory meetings and scientific seminars, and are encouraged to pursue personal outcomes that are non-gender specific to ensure that gender inequalities or gender specific outcomes are not restrictive. All investigators involved in the project will be supported by their institution in terms of intellectual property exploitation in the future thus benefitting from the opportunities afforded by the study, and this support will be given on a non-gender specific basis. In terms of the expected impact of the study, the beneficiaries of the impact of the project i.e. novel therapeutics for viral infections, will be both male and female. In this context, there are no gender specific issues as dengue is a pathogen that infects both males and females. Of note, reports have indicated a female sex bias for severe dengue however, the underlying reasons for this have yet to be established in the context of emerging data. This fundamental biomedical laboratory-based project is not expected to have an impact on the relations between people of different genders or people of the same gender. In terms of impact upon the economy, it is anticipated that any outcomes will be gender neutral as there are no specific actions that would risk being gender specific. Beneficiaries of the impact of this work are expected to be from all genders as dengue can infect individuals of any gender. Furthermore as this is a laboratory based project which is focused upon the development of antiviral therapeutics we have not identified any negative consequences for gender equality. However, in order to ensure that this remains to be the case throughout the lifetime of the project, equality impact assessments will be performed prior to any changes to the plan of work proposed herein to ensure that gender neutral working practices are maintained.
First Year Of Impact 2019
Sector Pharmaceuticals and Medical Biotechnology
Impact Types Cultural

 
Description Host Defence Peptides as novel modulators of autophagy in Inflammatory Bowel Disease (Daphne Jackson Fellowship awarded to F Findlay)
Amount £83,300 (GBP)
Organisation University of Surrey 
Sector Academic/University
Country United Kingdom
Start 10/2019 
End 09/2022
 
Description Collaboration between Edinburgh Napier, Eijkman Institute and Universities Indonesia 
Organisation Eijkman Institute
Country Indonesia 
Sector Public 
PI Contribution Professor Peter Barlow has overall responsibility for the UK component of the study and maintains the collaboration with the two institutions based in Indonesia, as well as maintaining the collaboration with Prof Jan Pohl within the Biotechnology Core facility within the US Centers for Disease Control and Prevention. Prof Barlow primarily supervises and directs the laboratory research of the Postdoctoral Research Fellow attached to the project, Dr Henderson Sousa (1 April 2020-present), and prior to her resignation, Dr Anderson (1 April 2019 - 31 January 2020), on an individual basis and during weekly laboratory meetings. In addition, Co-I Dr Craig Stevens provides scientific direction and guidance to the project team and to the postdoctoral fellow, underpinned through access to the laboratory facilities provided by Edinburgh Napier University. Prof Barlow is also responsible for ensuring synthesis (by CDC) and transport of host defence peptides. Both he and Dr Stevens provide scientific input into the experimental activities of the Indonesia-based components of the project. Prof Barlow and Dr Stevens hosted Dr Sasmono and Dr Bowolaksono at Edinburgh Napier University from 24 Aug - 30 Aug 2019 to a) engage in face to face discussion and planning for project milestones and b) for Prof Barlow and Dr Stevens to undertake knowledge exchange activities with Dr Sasmono and Dr Bowolaksono in the context of techniques for autophagy measurement to support Indonesian investigators in establishing this technique in their home institutions and training their own staff. This also fundamentally benefitted early career researchers through enhanced skills and expertise. As part of this visit, Dr Sasmono also delivered a presentation to staff and students in the School of Applied Sciences, which also attracted academics from other institutions. Prof Barlow visited the Eijkman Institute and Universitas Indonesia in September 2019, delivering a public lecture to an audience which included undergraduate and postgraduate students. During this visit discussions were also held in terms of project progression and experimental planning. The Research Innovation and Enterprise Office at Edinburgh Napier established an Agreement of Implementation (AOI) and Joint Research Agreement between the institutions to allow for the collaborative work to take place in line with MRC requirements.
Collaborator Contribution Both Dr Anom Bowolaksono and Dr Tedjo Sasmono have made academic, scientific and intellectual contribution to this partnership, providing advice and expertise for both UK and Indonesian based activities that are undertaken as part of the project, particularly in the context of research fellow supervision. Dr Sasmono has managed access to clinical samples for analysis as part of this project, and the Eijkman Institute provides facilities for experimental work with Dengue. The postdoctoral fellow working in Indonesia, Dr Komarudin receives line management as well as support, training and guidance from Dr Samono and Dr Bowolaksono and all parties provide expertise and scientific input as to the design, execution and analysis of experimental work. As part of a visit in August 2019 to undertake knowledge exchange activities with Dr Stevens and Prof Barlow in the context of techniques for autophagy measurement, Dr Sasmono delivered a presentation to staff and students in the School of Applied Sciences, attracting academics from other institutions. Again, this also fundamentally benefitted early career researchers through exposure to the expertise of Dr Sasmono and the opportunity to engage in scientific discussion.
Impact Collaborative grant applications were prepared and submitted to the Academy of Medical Sciences (September 2019 - £25k, GCRF networking grant award), as well as the Newton Impact Fund (June 2020 - £400k), the latter of which involved a collaboration with a UK-based company Marine Biopolymers, as well as investigators from the School of Engineering and the Built Environment within Edinburgh Napier, demonstrating an expansion of the collaborative links within the institution and the Indonesian investigators. Both of these applications were unfortunately not awarded (although we received notification that the Newton Impact fund application was successful in Indonesia), but we anticipate future applications to be made to secure funding for development of this study. A collaborative review article has been co-authored by investigators involved in the project team and pre-submission enquiries have been made to peer reviewed journals ahead of submission. We anticipate recording this as a published output in the next ResearchFish submission period. Of note, our collaboration is managed on the underpinning principles of Respect and Transparency. While leadership for components of the study is devolved on a country basis, all investigators in the project team are part of regular meetings determining the strategic and operational activities of the project with clearly articulated distribution of tasks and responsibilities for delivering the proposed project outcomes. Expertise in different areas is recognised and utilised for the effective and efficient delivery of the experimental work proposed in the study, and all investigators will benefit from intellectual property protection. In accord with our data management plan, full transparency and equity of access is ensured across all data generated as a result of the study.
Start Year 2019
 
Description Collaboration between Edinburgh Napier, Eijkman Institute and Universities Indonesia 
Organisation Universitas Indonesia
Country Indonesia 
Sector Academic/University 
PI Contribution Professor Peter Barlow has overall responsibility for the UK component of the study and maintains the collaboration with the two institutions based in Indonesia, as well as maintaining the collaboration with Prof Jan Pohl within the Biotechnology Core facility within the US Centers for Disease Control and Prevention. Prof Barlow primarily supervises and directs the laboratory research of the Postdoctoral Research Fellow attached to the project, Dr Henderson Sousa (1 April 2020-present), and prior to her resignation, Dr Anderson (1 April 2019 - 31 January 2020), on an individual basis and during weekly laboratory meetings. In addition, Co-I Dr Craig Stevens provides scientific direction and guidance to the project team and to the postdoctoral fellow, underpinned through access to the laboratory facilities provided by Edinburgh Napier University. Prof Barlow is also responsible for ensuring synthesis (by CDC) and transport of host defence peptides. Both he and Dr Stevens provide scientific input into the experimental activities of the Indonesia-based components of the project. Prof Barlow and Dr Stevens hosted Dr Sasmono and Dr Bowolaksono at Edinburgh Napier University from 24 Aug - 30 Aug 2019 to a) engage in face to face discussion and planning for project milestones and b) for Prof Barlow and Dr Stevens to undertake knowledge exchange activities with Dr Sasmono and Dr Bowolaksono in the context of techniques for autophagy measurement to support Indonesian investigators in establishing this technique in their home institutions and training their own staff. This also fundamentally benefitted early career researchers through enhanced skills and expertise. As part of this visit, Dr Sasmono also delivered a presentation to staff and students in the School of Applied Sciences, which also attracted academics from other institutions. Prof Barlow visited the Eijkman Institute and Universitas Indonesia in September 2019, delivering a public lecture to an audience which included undergraduate and postgraduate students. During this visit discussions were also held in terms of project progression and experimental planning. The Research Innovation and Enterprise Office at Edinburgh Napier established an Agreement of Implementation (AOI) and Joint Research Agreement between the institutions to allow for the collaborative work to take place in line with MRC requirements.
Collaborator Contribution Both Dr Anom Bowolaksono and Dr Tedjo Sasmono have made academic, scientific and intellectual contribution to this partnership, providing advice and expertise for both UK and Indonesian based activities that are undertaken as part of the project, particularly in the context of research fellow supervision. Dr Sasmono has managed access to clinical samples for analysis as part of this project, and the Eijkman Institute provides facilities for experimental work with Dengue. The postdoctoral fellow working in Indonesia, Dr Komarudin receives line management as well as support, training and guidance from Dr Samono and Dr Bowolaksono and all parties provide expertise and scientific input as to the design, execution and analysis of experimental work. As part of a visit in August 2019 to undertake knowledge exchange activities with Dr Stevens and Prof Barlow in the context of techniques for autophagy measurement, Dr Sasmono delivered a presentation to staff and students in the School of Applied Sciences, attracting academics from other institutions. Again, this also fundamentally benefitted early career researchers through exposure to the expertise of Dr Sasmono and the opportunity to engage in scientific discussion.
Impact Collaborative grant applications were prepared and submitted to the Academy of Medical Sciences (September 2019 - £25k, GCRF networking grant award), as well as the Newton Impact Fund (June 2020 - £400k), the latter of which involved a collaboration with a UK-based company Marine Biopolymers, as well as investigators from the School of Engineering and the Built Environment within Edinburgh Napier, demonstrating an expansion of the collaborative links within the institution and the Indonesian investigators. Both of these applications were unfortunately not awarded (although we received notification that the Newton Impact fund application was successful in Indonesia), but we anticipate future applications to be made to secure funding for development of this study. A collaborative review article has been co-authored by investigators involved in the project team and pre-submission enquiries have been made to peer reviewed journals ahead of submission. We anticipate recording this as a published output in the next ResearchFish submission period. Of note, our collaboration is managed on the underpinning principles of Respect and Transparency. While leadership for components of the study is devolved on a country basis, all investigators in the project team are part of regular meetings determining the strategic and operational activities of the project with clearly articulated distribution of tasks and responsibilities for delivering the proposed project outcomes. Expertise in different areas is recognised and utilised for the effective and efficient delivery of the experimental work proposed in the study, and all investigators will benefit from intellectual property protection. In accord with our data management plan, full transparency and equity of access is ensured across all data generated as a result of the study.
Start Year 2019
 
Description Collaboration with Dr Habiburrahman Zulfikri (Universitas Indonesia) 
Organisation Universitas Indonesia
Country Indonesia 
Sector Academic/University 
PI Contribution Professor Barlow wrote a letter of support to allow Dr Habiburrahman Zulfikri to apply for pump-priming grant funding.
Collaborator Contribution Dr Zulfikri is currently conducting molecular docking studies in collaboration with Prof Barlow examining binding sites of LL-37 to a range of pathogens including Dengue virus and Zika virus. It is anticipated this will complete a publication for submission to a peer reviewed journal.
Impact No outputs have yet been attained.
Start Year 2022
 
Description Invited Presentation, The Eijkman Institute for Molecular Biology, Jakarta, Indonesia. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Prof P Barlow delivered a seminar entitled "Host defence peptides as novel antiviral therapeutics" at the The Eijkman Institute for Molecular Biology, Jakarta, Indonesia. The seminar was attended by a number of senior and junior academic investigators as well as postdoctoral and predoctoral researchers and students. A discussion session was held after the seminar and potential collaborations were identified for future work.
It is estimated that 70 individuals attended from Indonesia.
Year(s) Of Engagement Activity 2019
 
Description Invited Presentation, The University of Indonesia Jakarta, Indonesia. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact Prof Peter Barlow delivered a seminar entitled "The role of host defence peptides in dengue virus and rhinovirus infection". The University of Indonesia (Invited Presentation), Jakarta, Indonesia. The seminar was attended by students of all levels (undergraduate and postgraduate) and a discussion session was held after the presentation where students asked questions and discussed the work with Prof Barlow.
It is estimated that 35 individuals were in attendance.
Year(s) Of Engagement Activity 2019
 
Description Invited Talk, British Society for Immunology Summer School (online) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Prof Peter Barlow delivered a seminar entitled "Inflammation modulation in the context of viral infection" during a virtual Summer School organised by the British Society for Immunology for PhD students. The seminar was attended by students of all PhD stages and a Q & A session was held after the presentation. It is estimated that 100-120 individuals were in attendance.
Year(s) Of Engagement Activity 2021
URL https://www.immunology.org/news/bsi-summer-school-2021
 
Description Poster Presentation at British Society for Immunology Annual Congress 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact A poster presentation was given by Dr Filipa Henderson Sousa at the British Society for Immunology Annual Congress in Edinburgh UK. Modulation of apoptosis by host defence peptides as a novel therapeutic approach for viral infections.
Filipa Henderson Sousa(1), Amalina Ghaisani Komarudin ( 2), Tedjo Sasmono ( 2), Fern Findlay Green e ( 1), Priyanka Shakamuri ( 3), Pavel Svoboda ( 3), Jan Pohl 2 )), Craig Stevens ( 1), Peter G. Barlow (1)
(1)School of Applied Sciences, Edinburgh Napier University, Sighthill Campus, Edinburgh EH11 4BN, United Kingdom
(2)Eijkman Institute for Molecular Biology, Jakarta 10430, Indonesia.
(3)Biotechnology Core Facility Branch, Division of Scientific Resources, US Centers for Disease Control and Prevention, Atlanta, GA , USA.

This poster led to a knowledge exchange activity with Neil Darroch of the company Anvajo.
Year(s) Of Engagement Activity 2021