Miniaturisation of high throughput healthcare bioreactors for advanced therapeutics

Lead Research Organisation: MicrofluidX Ltd
Department Name: Microfluidics

Abstract

There is little doubt of the promise of reprogramming a patient's own cells to combat degenerative diseases using cell and gene therapies (CDGT), given the success of Novartis Kymriah immunotherapy. However, one principal problem persists: the price point. The colossal costs of CGT reflect the current state-of-the-art: a slow manufacturing and development process from discovery to commercialization along with the exorbitant costs of multiple equipment needed to perform different processes. Thus, the bottleneck exists between production and accessibility. There is currently an unfulfilled need for a robust, scalable and closed bioprocessing manufacturing platform that can enable safe, low cost treatments, and rapid development time to improve accessibility to patients.

Our primary goal is to develop a high-throughput bioprocessing platform based on microfluidics technology. Microfluidics - the science of fluid manipulation in the microscale - is able to address the challenges for streamlined and high-throughput cell culture production by optimizing fluid consumption during cell expansion. We have already submitted a European patent application (B74637EP D38585) of a microfluidic chip design, which is the heart of the bioprocessing platform device. This design differs from existing microfluidic work because it is multi-functional, i.e. capable of performing standard processes (seeding, transduction, washing, sampling, harvest) in situ in a sealed environment while preventing invasive interventions.

Our innovation comes from the microfluidic technology applied to large scale cell culture compared to conventional 2D/3D manufacturing. The microfluidic cell culture technology has demonstrated several advantages compared to conventional methods:
1. Ability to perform seeding, expansion, transduction, differentiation, filtration, sampling and harvest processes in a closed system. Conventional 2D/3D systems and even current small-scale microfluidic systems have limited functionality (i.e. conceived to perform one or a few functions, e.g. expansion and perfusion) and therefore require 'opening' the process at some point, which usually is labor-intensive (therefore costly) and poses a safety threat (e.g. contamination).
2. Dramatic reduction in reactant consumption: usually 10-20x lower reactant consumption due to inherent minute volumes coupled with continuous perfusion systems used in microfluidics. Currently, with conventional 2D/3D systems, reactants represent 30-35% of total costs.
3. Better control of process parameters. 2D/3D systems are characterized by high cell to total volume ratio which leads to heterogeneous end product and low process efficiency (e.g., 1-2 days to transduce cells). Microfluidics allows to finely control concentrations and maximize cell-to-reactant contact, i.e. cells have equal access to oxygen and nutrients due to fluid circulation in micro-channels, which results in a more homogeneous end product and less process failure (e.g. cell death).
4. Ability to scale up without process change. Scale-ups with conventional 2D/3D technology require process adaptation. Existing small-scale microfluidic systems are not designed for high-throughput and thus cannot be scaled in a cost-effective way. Our platform uses a stackable cassette system which can be scaled from a few hundred cells to several hundred million of cells, without any process adaptations. Cells and fluids can be transferred between different parts of the system via automated pumps and microfluidic valves.

The invention of a bioprocessing platform that responds to these specifications requires multi-disciplinary approach and understanding of the underlying scientific principles: flow hydrodynamics (fluid mechanics), cell growth and culture (biology/biophysics/biochemistry), together with the development of the hardware (engineering) used for parallelization and automation of multiple large chips.

Publications

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Russo M (2022) Advances in microfluidic 3D cell culture for preclinical drug development. in Progress in molecular biology and translational science

 
Description Cell therapies have been proven to be effective treatments for various kinds of diseases. However, the costs per therapy are currently too expensive and therefore inaccessible. This bottleneck is largely driven by inefficient conventional manufacturing platforms that require costly overheads and large volumes of reagents, thereby resulting in a heterogeneous cell product prior to re-injection back into the patient. Through the research and engineering development work funded by this award, we are able to demonstrate the efficiency of small-volume bioreactors to better mimic cell micro-environments. This results to a more homogeneous cell product. Doing the entire cell therapy bioprocess couple with automation also speeds up the cell growth process. These bioreactors are new instruments that can improve manufacturing and lessen time from R&D to commercialization of cell therapies.
Exploitation Route Cell therapy companies can take advantage of the Cyto Engine™, MicrofluidX's superior and more efficient end-to-end bioprocessing platform. Once fully launched commercialized, it will enable cheaper development and faster time-to-market for cell and gene therapies. It will permit cell therapy manufacturing companies to reduce R&D costs and scale-up seamlessly from process development to cell manufacturing without a drastic change in bioreactor systems.

Moreover, because development costs have been reduced, treatment costs could also potentially decrease. It will become more attractive for cell therapy/pharma companies to lower prices to make it more accessible to patients.
Sectors Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL https://insights.bio/cell-and-gene-therapy-insights/journal/article/2576/Key-benefits-of-a-microfluidic-platform-for-cell-culture-at-a-clinically-relevant-scale
 
Description Some of our findings have been featured in Emerging technologies and companies in cell and gene therapy (https://insights.bio/cell-and-gene-therapy-insights/journal/article/2698/Emerging-technologies-companies-in-cell-gene-therapy-manufacturing). Through the work we have done at MicrofluidX, thanks in part to this funding, we are able to contribute to improvements in the cell and gene therapy industry in the UK by advocating the use of multiplexed small-volume cell culture bioreactors to improve cell efficiency while maintaining throughput. In recent years, a lot of start-ups have sprouted specifically in this space due to the potential of small-volume bioreactors in cell and gene therapy.
First Year Of Impact 2023
Sector Education,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic

 
Description Consistent participation in BioIndustry Association
Geographic Reach National 
Policy Influence Type Contribution to new or improved professional practice
URL https://www.linkedin.com/posts/microfluidx_adtherapies23-advancedtherapies-bioprocessing-activity-70...
 
Description MedPhab: Photonics Solutions at Pilot Scale for Accelerated Medical Device Development
Amount € 200,000 (EUR)
Funding ID 871345 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 02/2023 
End 07/2023
 
Title Automated analytics acquisition 
Description As part of the development of our machine product platform, we have developed new research tools that will help monitor data consistently during cell growth expansion. This is a combination of best-in-line sensors (pH, O2, CO2, flow rate, gas) and bespoke imaging methods. The coupling of all these sensors provide data on parameters needed to successfully and efficiently perform cell culture in an automated manner. This research tool and data acquisition method is integrated into our machine platforms that operate the bioreactors. 
Type Of Material Improvements to research infrastructure 
Year Produced 2022 
Provided To Others? No  
Impact This data acquisition method is an integral part of operating our machine product platform for both process development research engine and the cell manufacturing platform. And tests on our prototypes indicate success. The link presented below is a result of this data acquisition method. Further details of this data acquisition tool are currently being refined and therefore details remain confidential. 
URL https://www.microfluidx.co.uk/products/
 
Title Automated data acquisition of cell data 
Description Through internal validation using our prototypes of our automated machine platform around the bioreactor, we have acquired database of cell data (expansion, transduction, for various types of cells (suspension and adherent). And some of these data sets are provided in the link. Datasets have also been provided by client partners after external validation and benchmarking is tests - but these remain confidential. 
Type Of Material Data analysis technique 
Year Produced 2022 
Provided To Others? Yes  
Impact These cell data sets help us understand better the nature of cell expansion in our bioreactors and adapt strategies for our machine platform (e.g. when the pH starts to increase, the CO2 is automatically injected to keep the buffers at the appropriate level). 
URL https://www.microfluidx.co.uk/data/
 
Description Gen 1 Prototype Validation with Primary T-cells 
Organisation Cell and Gene Therapy Catapult
Country United Kingdom 
Sector Private 
PI Contribution We have provided the first generation prototype of our automated closed platform that allows for end-to-end bioprocessing for high-throughput cell culture in single-use bioreactors. Together with the machine prototype, we also provided the first iterations of our bioreactor consumable. We provided training to our partners on how to use operate the machine as well as use the bioreactor. While this partnership has started before the award, the FLF funding has provided additional financial support, in 2021, to fabricate the single-use bioreactor consumables for use in this R&D partnership.
Collaborator Contribution CGTC's role was to independently test our automated platform prototype, as well as the bioreactor consumable, in terms of end-to-end bioprocessing, similar to how cell manufacturing is performed. They have evaluated the prototype's efficiency in terms of seeding, activation, viral transduction, expansion, washing, formulation and cell harvest.
Impact Principal outcomes of the project include validation of the company technology, based on the R&D that the team has done. The results also have a direct impact on design iterations of our bioreactor consumable as well as feedback for improvements in the succeeding version of our automated prototype.
Start Year 2020
 
Description Manufacturing trials for high-throughput microfluidic bioprocessing cassette 
Organisation VTT Technical Research Centre of Finland Ltd
Country Finland 
Sector Academic/University 
PI Contribution As VP for Microfluidics, I am responsible for design and manufacturing of our single-use bioreactor consumables, based on microfluidics technology. We have provided input on what the design and application is our consumable and validate the manufactured prototypes by performing successful cell culture tests.
Collaborator Contribution Aim of the project was to investigate and prototype mass manufacturing processes for a microfluidic bioprocessing cassette (single use bioreactor consumable for cell manufacturing scale-up). The scope covered different manufacturing techniques for different layers and assembly of the cassette. Manufacturing trials were performed with selected materials and methods and assembled cartridges were sent out to MicrofluidX.
Impact Manufactured consumables as well as a validated manufacturing process. The results allowed us to validate that our consumable design can be manufactured at a large quantity. This is particularly important for a business that relies on consumable sale business model.
Start Year 2022
 
Description Mesofluidic module splitter for uniform distribution of fluids and cell suspensions 
Organisation University of Hertfordshire
Country United Kingdom 
Sector Academic/University 
PI Contribution In this partnership, we provide the initial designs of the mesofluidic module splitter based on its intended functionality and application in therapeutic fill-and-finish systems, wherein large volumes of fluid are separated into multiple aliquots (up to 64 bags/vials/tubes) in a faster rate (under 20 minutes). It is important that each aliquot contains equal volumes as well as cell concentration. MicrofluidX research also provided funding.
Collaborator Contribution The University of Hertfordshire researchers took the initial designs and made iterations as well as prototypes. They have tested these prototypes and generated data to determine efficiency of the mesofluidic modular splitter for fill-and-finish applications.
Impact There is a joint patent application, filed on a the 5th of October 2022 in the United States, with Application No: 63/413,528. As of March 2023, there is a draft of a publication that has been edited and ready to submission for review. The target journal is Chemical Engineering Journal.
Start Year 2022
 
Description Validation Trial of Bioreactor Efficiency with Mesenchymal Stem Cells 
Organisation Stemmatters
Country Portugal 
Sector Private 
PI Contribution This partnership is currently ongoing. The goal is to validate the designed bioreactors with adherent cell types, specifically mesenchymal stem cells. The research team provide fabricated sterile bioreactors for Stemmatters to use. One of the team members has also been sent to Portugal to conduct training on the use and functionality of the bioreactors.
Collaborator Contribution This partnership is currently ongoing. Stemmatters will benchmark the designed bioreactors against their existing protocol for culturing mesenchymal stem cells. They will provide efficiency comparison on cell growth expansion, morphology, phenotype expression for both conventional bioreactor and the MicrofluidX bioreactor.
Impact This partnership is still ongoing. Expected outputs include data on mesenchymal stem cell growth numbers over time, changes in morphology and phenotype expression. Information on the quantity and cost of biological reagents used to culture the MSCs in MicrofluidX bioreactors will provide information on potential cost savings on using MicrofluidX bioreactors compared to conventional bioreactors.
Start Year 2023
 
Title CELL CULTURE DEVICE AND METHOD OF USING THE SAME 
Description The present invention relates to a cell culture device comprising at least a fluidic channel having at least a cell medium inlet and a cell medium outlet, said fluidic channel comprising a lower wall extending between the cell medium inlet and the cell medium outlet, the cell culture device further comprising at least one recess configured to receive a plurality of cells, said recess being formed by the lower wall and defining a bottom surface, and at least a cell trap, said cell trap being configured to capture a cell advected in the fluidic channel and then to make the cell sediment to the bottom surface of the recess. 
IP Reference US2021355426 
Protection Patent / Patent application
Year Protection Granted 2021
Licensed No
Impact This has contributed to the design of the MicrofluidX consumable bioreactor.
 
Title SYSTEMS AND METHODS FOR ASEPTIC CONNECTION 
Description This describes a bespoke single-click aseptic connection for use in GMP cell manufacturing, with self-sterilization functionalities, thereby permitting fluid transfer without contamination. 
IP Reference 63/439,268 
Protection Patent / Patent application
Year Protection Granted 2023
Licensed No
Impact This invention is an important component in the research and manufacturing platforms, Explorium and Cellisium respectively.
 
Title SYSTEMS AND METHODS FOR BIOPROCESSING 
Description This describes the specific features and functionality of the single cell culture bioreactor that permits high efficiency seeding homogeneity, lentivirus transduction efficiency, high efficiency cell growth, expansion and harvest. 
IP Reference 63/285,062 
Protection Patent / Patent application
Year Protection Granted 2021
Licensed No
Impact This has led ti the manufacturing of our single use bioreactor consumable for cell culture. This consumable is not commercially available yet but have been given to out client partners for their in-house validation and benchmarking tests.
 
Title SYSTEMS AND METHODS FOR BIOPROCESSING - FLUID HANDLING 
Description This describes the fluid handling design in the machine platform, indicating precise positioning of the valves, tubing connections to ensure efficient delivery of the various types of biological reagents used in cell culture to the bioreactor consumable. 
IP Reference 63/404,497 
Protection Patent / Patent application
Year Protection Granted 2022
Licensed No
Impact This has contributed greatly to the development and assembly of the MicrofluidX GMP cell manufacturing platform, Cellisium.
 
Title SYSTEMS AND METHODS FOR DIRECTING FLUID 
Description This describes the design and functionality of a many-to-many valve that permits sterile distribution and redirection of fluid across multiple bioreactors. 
IP Reference 63/439,267 
Protection Patent / Patent application
Year Protection Granted 2023
Licensed No
Impact This is an important component in the development of the MicrofluidX research platform, Explorium.
 
Title SYSTEMS AND METHODS FOR FLUID DISTRIBUTION 
Description This describes the features, design and functionality of a mesofluidic fill-and-finish system, for uniform and rapid filling of aliquots (bags/vials/tubes). 
IP Reference 63/413,528 
Protection Patent / Patent application
Year Protection Granted 2022
Licensed No
Impact This has led to the development of a product, called Divisium (not launched yet), as a more cost-effective fill and finish system.
 
Title SYSTEMS AND METHODS FOR PARALLELIZED BIOPROCESSING 
Description We have developed a strategy method of seamless parallelisation and multiplexing of multiple cell culture bioreactors without the need of high fluid pressures or perfusion flow rates. 
IP Reference 63/285,066 
Protection Patent / Patent application
Year Protection Granted 2021
Licensed No
Impact This has led to other development of intellectual property as well as consumable products. These products are not commercially available yet but have been sent to client partners for use in their in-house validation trials.
 
Title Medical Device Product Development 
Description The medical device is a bioreactor, which permits efficient high throughput cell culture. The bioreactor is a single-use consumable. Currently, it is in the development and low-volume manufacturing phase for in-house validation tests and benchmarking tests with client partners. This is to acquire internal and external feedback for further iterations and improvements. In due course, itt will eventually undergo appropriate regulatory approval for ISO13485 certification prior to commercialization. 
Type Support Tool - For Fundamental Research
Current Stage Of Development Refinement. Non-clinical
Year Development Stage Completed 2023
Development Status Under active development/distribution
Impact The product is still under development and continued assessment. We have acquired a pipeline of external client partners who are eager to test the bioreactor - as well as the automated machine platform itself. Data and feedback from these benchmarking tests will help improve the features and functionality of the bioreactor - one that really meets the need of the client. 
 
Title Cellisium cell manufacturing engine 
Description Cellisium is MicrofluidX's GMP cell manufacturing engine, which is used for high-throughput cell expansion in MicrofluidX's own bespoke bioreactors. The machine combines automation in terms of fluid handling and manipulation as well as data acquisition (sensors, imaging). 
Type Of Technology Systems, Materials & Instrumental Engineering 
Year Produced 2023 
Impact MicrofluidX now has some clients eager to try the GMP manufacturing engine. Our first prototype will be trialed and externally validated by CCRM - a Canadian CDMO (https://www.ccrm.ca). Additional prototypes are currently being made to cater to other clients, which cannot be divulged as of the moment, pending press release. 
URL https://www.microfluidx.co.uk/products/
 
Description FIRM 2022 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact MicrofluidX was a sponsor for the Future Investigators for Regenerative Medicine (FIRM 2022). Members of my team led a workshop entitled, "Cell Culture and GMP Considerations in the Design of Microfluidics Bioreactors" to postgraduate students to help them understand the benefits of using microfluidics cell culture instead of conventional flasks/well-plates.
Year(s) Of Engagement Activity 2022
URL https://www.firmsymposium.com
 
Description Panel Discussions 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Industry/Business
Results and Impact Some members of the MicrofluidX team were invited to take part in various panel discussions concerning the CGT community and talking to the next generation about routes into the industry.

Césaré was on the YES23 panel talking about his experiences of being an academic co-founder

Lindsey was at the inaugural CGT circle networking event hosted by Virocell Biologics in London

Maria was presenting her career journey at the UCL international Women's Day Panel
Year(s) Of Engagement Activity 2023
URL https://www.linkedin.com/feed/update/urn:li:activity:7041377429495410688/
 
Description Product Launch of the Cyto Engine™ 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact This is the product launch of the MicrofluidX automated platform, the Cyto Engine™. MicrofluidX has decided to sponsor the conference Phacilitate 2023 (Advanced Therapies Week) in Miami, Florida. In addition, we bought a booth to showcase and launch the Cyto Engine™ platform, both R&D and cell manufacturing platforms.
Year(s) Of Engagement Activity 2023
URL https://www.linkedin.com/feed/update/urn:li:activity:7022163397328674816/
 
Description Video Explainer: Cyto Engine™ Presentation 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact This is a video explainer that was disseminated starting January 2023 in different conferences that the team members have attended. This provides a basic explanation of the importance and advantage of miniaturization of bioreactors for cell and gene therapies. This also provides a background on what the automated machine platform can offer for process development to cell manufacturing for advanced therapies. Because of this video, MicrofluidX has gained traction and interest for additional client partnerships. These are currently in negotiation and can only be divulged after an official press release.
Year(s) Of Engagement Activity 2023
URL https://drive.google.com/file/d/1yUdY5zET5vraowGzyUwOS58f1vy3zexJ/view