Mapping populations to patients: designing optimal ablation therapy for atrial fibrillation through simulation and deep learning of digital twins
Lead Research Organisation:
Queen Mary University of London
Department Name: School of Engineering & Materials Scienc
Abstract
Atrial Fibrillation (AF) is an irregular heart rhythm that affects ~1 million people in the UK. It increases the risk of other cardiovascular diseases including heart failure, stroke and death. Patients who do not respond to drug therapy may be treated using radio frequency catheter ablation treatment, which aims to isolate areas of pathological tissue responsible for AF. In more advanced AF patients, treatment is sub-optimal with 40% of patients suffering from AF recurrence at 18-month follow-up. For these patients, 2-3 repeat procedures may be required. Different ablation approaches are used by different clinical centres and different clinicians, with varying degrees of personalisation to the individual patient anatomy, electrical properties and history.
In the current state of the art, there are large clinical population datasets available that inform treatment approaches for the average patient within a population. In parallel to this, there are also increasingly more detailed patient-specific models available. However, these approaches are typically disjoint. My vision is that we link information measured across a population to patient-specific models for predictive treatments. Tailoring ablation therapy to the individual patient, using data collected across a population, will improve long-term outcome and reduce recurrence, so that patients require fewer and shorter procedures.
Cardiac electrical signal mapping and imaging systems provide large quantities of spatial and temporal measurements for characterising the atria across populations of patients. These data can be used for constructing computational biophysical models of the atria, which in turn provide a physiological and physics constrained framework for investigating AF properties in personalised patient-specific models. Studying large virtual patient cohorts of these biophysical models can provide important insights into AF treatment approaches. However, these computer models run too slowly to be used during clinical procedures, and currently only capture what happens immediately after the treatment, and not the long-term response (for example, a year after the procedure). Machine learning techniques can capture complex relationships and generate fast predictions. To overcome the challenge of predicting the long-term response within a clinical timeframe, I will train a machine learning network to the large virtual patient cohort and clinical datasets to quickly predict treatment outcome from patient imaging and electrical data. I will also use imaging datasets that show how the structure of the atria changes during the months following the procedure. Updating the model (or digital twin) with these measurements will improve the ability of the model or network to predict the long-term outcome for the patient.
This project will move models from the research environment to clinical applications. These methodologies will be combined into a clinical tool that processes imaging and electrical measurements to map population therapy outcomes to patient-specific predictive treatments during the clinical procedure. The tool will take imaging and electrical data for a patient, and output different ablation therapy approaches together with how likely they are to reduce AF recurrence (and improve outcome), to aid patient-specific treatment planning. This project has clinical and industrial project partners to enable clinical translation of the technology. Use of the methodology developed during this fellowship may lead to better treatment selection, and decreased time and cost for AF catheter ablation procedures.
In the current state of the art, there are large clinical population datasets available that inform treatment approaches for the average patient within a population. In parallel to this, there are also increasingly more detailed patient-specific models available. However, these approaches are typically disjoint. My vision is that we link information measured across a population to patient-specific models for predictive treatments. Tailoring ablation therapy to the individual patient, using data collected across a population, will improve long-term outcome and reduce recurrence, so that patients require fewer and shorter procedures.
Cardiac electrical signal mapping and imaging systems provide large quantities of spatial and temporal measurements for characterising the atria across populations of patients. These data can be used for constructing computational biophysical models of the atria, which in turn provide a physiological and physics constrained framework for investigating AF properties in personalised patient-specific models. Studying large virtual patient cohorts of these biophysical models can provide important insights into AF treatment approaches. However, these computer models run too slowly to be used during clinical procedures, and currently only capture what happens immediately after the treatment, and not the long-term response (for example, a year after the procedure). Machine learning techniques can capture complex relationships and generate fast predictions. To overcome the challenge of predicting the long-term response within a clinical timeframe, I will train a machine learning network to the large virtual patient cohort and clinical datasets to quickly predict treatment outcome from patient imaging and electrical data. I will also use imaging datasets that show how the structure of the atria changes during the months following the procedure. Updating the model (or digital twin) with these measurements will improve the ability of the model or network to predict the long-term outcome for the patient.
This project will move models from the research environment to clinical applications. These methodologies will be combined into a clinical tool that processes imaging and electrical measurements to map population therapy outcomes to patient-specific predictive treatments during the clinical procedure. The tool will take imaging and electrical data for a patient, and output different ablation therapy approaches together with how likely they are to reduce AF recurrence (and improve outcome), to aid patient-specific treatment planning. This project has clinical and industrial project partners to enable clinical translation of the technology. Use of the methodology developed during this fellowship may lead to better treatment selection, and decreased time and cost for AF catheter ablation procedures.
Organisations
- Queen Mary University of London (Lead Research Organisation)
- IMPERIAL COLLEGE LONDON (Collaboration)
- Stanford University School of Medicine (Collaboration)
- University of Bordeaux (Collaboration, Project Partner)
- University of Freiburg (Project Partner)
- Imperial College London (Project Partner)
- Stanford University (Project Partner)
- University of Edinburgh (Project Partner)
- Royal Brompton & Harefield NHS Foundation Trust (Project Partner)
- Philips Electronics Netherlands BV (Project Partner)
Publications
Jaffery O
(2024)
A Review of Personalised Cardiac Computational Modelling Using Electroanatomical Mapping Data
in Arrhythmia & Electrophysiology Review
Roney CH
(2023)
Constructing bilayer and volumetric atrial models at scale.
in Interface focus
Vigmond E
(2024)
The Accuracy of Cardiac Surface Conduction Velocity Measurements
| Description | We have developed a cardiac modelling toolkit for constructing atrial models at scale. This enables large in silico trials and personalised model predictions on clinical timescales. We have also developed new methodologies for calibrating or personalising patient-specific models, and for predicting atrial fibrillation ablation outcome using deep learning. |
| Exploitation Route | We will utilise these methodologies towards our overall objectives in the futures years of the award. These advances may be used by others in cardiac digital twins or in silico trial research. |
| Sectors | Healthcare |
| URL | https://royalsocietypublishing.org/doi/10.1098/rsfs.2023.0038 |
| Description | Our research has achieved impact and provided the public with information on using digital twins in healthcare through the Ecosystem for Digital Twins in healthcare initiative (https://www.edith-csa.eu/), and through multiple outreach channels (Guardian, EETimes Europe, the Naked Scientists podcast). It has also featured in a white paper on the role of artificial intelligence within in silico medicine, and a UK landscape report (Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences). |
| First Year Of Impact | 2023 |
| Sector | Healthcare |
| Impact Types | Societal Policy & public services |
| Description | EDITH - Ecosystem for Digital Twins in Healthcare |
| Geographic Reach | Europe |
| Policy Influence Type | Contribution to a national consultation/review |
| URL | https://www.edith-csa.eu/ |
| Description | Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences: A UK Landscape Report |
| Geographic Reach | Multiple continents/international |
| Policy Influence Type | Citation in other policy documents |
| URL | https://zenodo.org/records/7723230 |
| Description | WHITE PAPER: THE ROLE OF ARTIFICIAL INTELLIGENCE WITHIN IN SILICO MEDICINE |
| Geographic Reach | Multiple continents/international |
| Policy Influence Type | Citation in other policy documents |
| URL | http://www.vph-institute.org/upload/ai-in-health-white-paper_6331c4e3c60cb.pdf |
| Description | Knowledge Transfer Partnership |
| Amount | £227,803 (GBP) |
| Organisation | Innovate UK |
| Sector | Public |
| Country | United Kingdom |
| Start | 03/2023 |
| End | 12/2025 |
| Description | Turing University Network Award. Digital Health workshop event organised between QMUL, UCL and ICL. |
| Amount | £3,000 (GBP) |
| Organisation | Alan Turing Institute |
| Sector | Academic/University |
| Country | United Kingdom |
| Start | 05/2023 |
| End | 07/2023 |
| Title | Constructing bilayer and volumetric atrial models at scale |
| Description | To enable large in silico trials and personalised model predictions on clinical timescales, it is imperative that models can be constructed quickly and reproducibly. First, we aimed to overcome the challenges of constructing cardiac models at scale through developing a robust, open-source pipeline for bilayer and volumetric atrial models. Second, we aimed to investigate the effects of fibres, fibrosis and model representation (surface or volumetric) on fibrillatory dynamics. To construct bilayer and volumetric models, we extended our previously developed coordinate system to incorporate transmurality, atrial regions, and fibres (rule-based or data driven diffusion tensor MRI). We demonstrate the generalisation of these methods by creating a cohort of 1000 biatrial bilayer and volumetric models derived from CT data, as well as models from MRI, and electroanatomic mapping. Fibrillatory dynamics diverged between bilayer and volumetric simulations across the CT cohort (correlation co-efficient for phase singularity maps: LA 0.27±0.19, RA 0.41±0.14). Adding fibrotic remodelling stabilised re-entries and reduced the impact of model type in the LA (LA: 0.52±0.20, RA: 0.36±0.18). The choice of fibre field has a small effect on paced activation data (<12ms), but a larger effect on fibrillatory dynamics. Overall, we developed an open-source user-friendly pipeline for generating atrial models from imaging or electroanatomic mapping enabling in silico clinical trials at scale. |
| Type Of Material | Improvements to research infrastructure |
| Year Produced | 2023 |
| Provided To Others? | Yes |
| Impact | We use this technique for building patient specific computational models. |
| URL | https://github.com/pcmlab/atrialmtk |
| Description | Imperial College London, Centre of Cardiac Engineering |
| Organisation | Imperial College London |
| Department | National Heart & Lung Institute (NHLI) |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Analysis techniques for cardiac fibrillation data |
| Collaborator Contribution | Analysis techniques for cardiac fibrillation data |
| Impact | https://www.ncbi.nlm.nih.gov/pubmed/31723154 Standardised Framework for Quantitative Analysis of Fibrillation Dynamics |
| Start Year | 2018 |
| Description | LIRYC Bordeaux |
| Organisation | University of Bordeaux |
| Country | France |
| Sector | Academic/University |
| PI Contribution | Developing methodologies for computational AF modelling |
| Collaborator Contribution | Developing methodologies for computational AF modelling |
| Impact | Universal atrial coordinates applied to visualisation, registration and construction of patient specific meshes: https://www.ncbi.nlm.nih.gov/pubmed/31026761 |
| Start Year | 2018 |
| Description | Stanford University |
| Organisation | Stanford University School of Medicine |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | Collaborating with Prof Sanjiv Narayan and his team for global AF mapping data analysis and model calibration with uncertainty. |
| Collaborator Contribution | Collaborating with Prof Sanjiv Narayan and his team for global AF mapping data analysis and model calibration with uncertainty. |
| Impact | https://pubmed.ncbi.nlm.nih.gov/35089057/ https://pubmed.ncbi.nlm.nih.gov/36934383/ https://pubmed.ncbi.nlm.nih.gov/38106921/ |
| Start Year | 2022 |
| Title | pcmlab/atrialmtk: Atrial Modelling Toolkit for Constructing Bilayer and Volumetric Atrial Models at Scale for Interface Foucs |
| Description | Examples for Atrial Modelling Toolkit for Constructing Bilayer and Volumetric Atrial Models at Scale. Please see our github: https://github.com/pcmlab/atrialmtk/. |
| Type Of Technology | Software |
| Year Produced | 2023 |
| Open Source License? | Yes |
| Impact | Cardiac modelling at scale. Included as a use case for the Ecosystem for Digital Twins in Healthcare Project. |
| URL | https://zenodo.org/doi/10.5281/zenodo.10139305 |
| Description | AI and healthcare podcast for Queen Mary outreach event |
| Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Schools |
| Results and Impact | AI and healthcare podcast for Queen Mary outreach event with 70 online participants |
| Year(s) Of Engagement Activity | 2024 |
| Description | European Virtual Human Twin CSA consortium |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Other audiences |
| Results and Impact | Participating in the European Virtual Human Twin CSA consortium, through a cardiovascular use case. Running clinical engagement sessions. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.edith-csa.eu/ |
| Description | Interview for EETimes Europe magazine |
| Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Public/other audiences |
| Results and Impact | Featured in a EETimes Europe magazine article on Digital Twins in healthcare: "Human Digital Twins Are Set to Revolutionize Medicine" |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.eetimes.eu/human-digital-twins-are-set-to-revolutionize-medicine/ |
| Description | Interview for national newspaper (Guardian) |
| Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Public/other audiences |
| Results and Impact | Featured in a Guardian article on Digital Twins in healthcare: "How digital twins may enable personalised health treatment" |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.theguardian.com/science/2023/nov/12/digital-twin-personalised-medical-treatment |
| Description | Organised a Multi-scale & Multi-modality Digital Health Collaboration Workshop |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Postgraduate students |
| Results and Impact | Organised a Multi-scale & Multi-modality Digital Health Collaboration Workshop at QMUL, funded by the Alan Turing Institute, with around 120 participants. Digital health is a rapidly growing field. To personalize treatment approaches through digital health, we need to utilize all available data to provide mechanistic understanding and inform therapies at the patient-specific and population level. These data are collected using different modalities, at widely different spatio-temporal scales, creating large challenges and opportunities in Digital Health. This event aims to bring together researchers working with data across different scales and modalities, from basic scientists and clinicians, through to industry, using different types of computational techniques, from physics-based models to machine learning and digital health in industry. We will motivate exciting areas of development through a series of talks and posters, and then have sandpit sessions with a series of short pitches, with the aim of initiating new collaborations. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.turing.ac.uk/events/multi-scale-multi-modality-digital-health-collaboration-workshop |
| Description | Podcast interview for Naked Scientists |
| Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Public/other audiences |
| Results and Impact | Took part in a podcast on the Naked Scientists on: "Jet engines, hearts, and planets: the world of digital twins" |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.thenakedscientists.com/podcasts/naked-scientists-podcast/jet-engines-hearts-and-planets-... |
| Description | Presented at European Heart Rhythm Association conference |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Other audiences |
| Results and Impact | Presented our research at European Heart Rhythm Association conference, Barcelona. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.escardio.org/Congresses-Events/EHRA-Congress/Scientific-sessions |
