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Mapping populations to patients: designing optimal ablation therapy for atrial fibrillation through simulation and deep learning of digital twins

Lead Research Organisation: Queen Mary University of London
Department Name: School of Engineering & Materials Scienc

Abstract

Atrial Fibrillation (AF) is an irregular heart rhythm that affects ~1 million people in the UK. It increases the risk of other cardiovascular diseases including heart failure, stroke and death. Patients who do not respond to drug therapy may be treated using radio frequency catheter ablation treatment, which aims to isolate areas of pathological tissue responsible for AF. In more advanced AF patients, treatment is sub-optimal with 40% of patients suffering from AF recurrence at 18-month follow-up. For these patients, 2-3 repeat procedures may be required. Different ablation approaches are used by different clinical centres and different clinicians, with varying degrees of personalisation to the individual patient anatomy, electrical properties and history.

In the current state of the art, there are large clinical population datasets available that inform treatment approaches for the average patient within a population. In parallel to this, there are also increasingly more detailed patient-specific models available. However, these approaches are typically disjoint. My vision is that we link information measured across a population to patient-specific models for predictive treatments. Tailoring ablation therapy to the individual patient, using data collected across a population, will improve long-term outcome and reduce recurrence, so that patients require fewer and shorter procedures.

Cardiac electrical signal mapping and imaging systems provide large quantities of spatial and temporal measurements for characterising the atria across populations of patients. These data can be used for constructing computational biophysical models of the atria, which in turn provide a physiological and physics constrained framework for investigating AF properties in personalised patient-specific models. Studying large virtual patient cohorts of these biophysical models can provide important insights into AF treatment approaches. However, these computer models run too slowly to be used during clinical procedures, and currently only capture what happens immediately after the treatment, and not the long-term response (for example, a year after the procedure). Machine learning techniques can capture complex relationships and generate fast predictions. To overcome the challenge of predicting the long-term response within a clinical timeframe, I will train a machine learning network to the large virtual patient cohort and clinical datasets to quickly predict treatment outcome from patient imaging and electrical data. I will also use imaging datasets that show how the structure of the atria changes during the months following the procedure. Updating the model (or digital twin) with these measurements will improve the ability of the model or network to predict the long-term outcome for the patient.

This project will move models from the research environment to clinical applications. These methodologies will be combined into a clinical tool that processes imaging and electrical measurements to map population therapy outcomes to patient-specific predictive treatments during the clinical procedure. The tool will take imaging and electrical data for a patient, and output different ablation therapy approaches together with how likely they are to reduce AF recurrence (and improve outcome), to aid patient-specific treatment planning. This project has clinical and industrial project partners to enable clinical translation of the technology. Use of the methodology developed during this fellowship may lead to better treatment selection, and decreased time and cost for AF catheter ablation procedures.
 
Description We have developed a cardiac modelling toolkit for constructing atrial models at scale. This enables large in silico trials and personalised model predictions on clinical timescales. We have also developed new methodologies for calibrating or personalising patient-specific models, and for predicting atrial fibrillation ablation outcome using deep learning.
Exploitation Route We will utilise these methodologies towards our overall objectives in the futures years of the award. These advances may be used by others in cardiac digital twins or in silico trial research.
Sectors Healthcare

URL https://royalsocietypublishing.org/doi/10.1098/rsfs.2023.0038
 
Description Our research has achieved impact and provided the public with information on using digital twins in healthcare through the Ecosystem for Digital Twins in healthcare initiative (https://www.edith-csa.eu/), and through multiple outreach channels (Guardian, EETimes Europe, the Naked Scientists podcast). It has also featured in a white paper on the role of artificial intelligence within in silico medicine, and a UK landscape report (Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences).
First Year Of Impact 2023
Sector Healthcare
Impact Types Societal

Policy & public services

 
Description EDITH - Ecosystem for Digital Twins in Healthcare
Geographic Reach Europe 
Policy Influence Type Contribution to a national consultation/review
URL https://www.edith-csa.eu/
 
Description Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences: A UK Landscape Report
Geographic Reach Multiple continents/international 
Policy Influence Type Citation in other policy documents
URL https://zenodo.org/records/7723230
 
Description WHITE PAPER: THE ROLE OF ARTIFICIAL INTELLIGENCE WITHIN IN SILICO MEDICINE
Geographic Reach Multiple continents/international 
Policy Influence Type Citation in other policy documents
URL http://www.vph-institute.org/upload/ai-in-health-white-paper_6331c4e3c60cb.pdf
 
Description Knowledge Transfer Partnership
Amount £227,803 (GBP)
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 03/2023 
End 12/2025
 
Description Turing University Network Award. Digital Health workshop event organised between QMUL, UCL and ICL.
Amount £3,000 (GBP)
Organisation Alan Turing Institute 
Sector Academic/University
Country United Kingdom
Start 05/2023 
End 07/2023
 
Title Constructing bilayer and volumetric atrial models at scale 
Description To enable large in silico trials and personalised model predictions on clinical timescales, it is imperative that models can be constructed quickly and reproducibly. First, we aimed to overcome the challenges of constructing cardiac models at scale through developing a robust, open-source pipeline for bilayer and volumetric atrial models. Second, we aimed to investigate the effects of fibres, fibrosis and model representation (surface or volumetric) on fibrillatory dynamics. To construct bilayer and volumetric models, we extended our previously developed coordinate system to incorporate transmurality, atrial regions, and fibres (rule-based or data driven diffusion tensor MRI). We demonstrate the generalisation of these methods by creating a cohort of 1000 biatrial bilayer and volumetric models derived from CT data, as well as models from MRI, and electroanatomic mapping. Fibrillatory dynamics diverged between bilayer and volumetric simulations across the CT cohort (correlation co-efficient for phase singularity maps: LA 0.27±0.19, RA 0.41±0.14). Adding fibrotic remodelling stabilised re-entries and reduced the impact of model type in the LA (LA: 0.52±0.20, RA: 0.36±0.18). The choice of fibre field has a small effect on paced activation data (<12ms), but a larger effect on fibrillatory dynamics. Overall, we developed an open-source user-friendly pipeline for generating atrial models from imaging or electroanatomic mapping enabling in silico clinical trials at scale. 
Type Of Material Improvements to research infrastructure 
Year Produced 2023 
Provided To Others? Yes  
Impact We use this technique for building patient specific computational models. 
URL https://github.com/pcmlab/atrialmtk
 
Description Imperial College London, Centre of Cardiac Engineering 
Organisation Imperial College London
Department National Heart & Lung Institute (NHLI)
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis techniques for cardiac fibrillation data
Collaborator Contribution Analysis techniques for cardiac fibrillation data
Impact https://www.ncbi.nlm.nih.gov/pubmed/31723154 Standardised Framework for Quantitative Analysis of Fibrillation Dynamics
Start Year 2018
 
Description LIRYC Bordeaux 
Organisation University of Bordeaux
Country France 
Sector Academic/University 
PI Contribution Developing methodologies for computational AF modelling
Collaborator Contribution Developing methodologies for computational AF modelling
Impact Universal atrial coordinates applied to visualisation, registration and construction of patient specific meshes: https://www.ncbi.nlm.nih.gov/pubmed/31026761
Start Year 2018
 
Description Stanford University 
Organisation Stanford University School of Medicine
Country United States 
Sector Academic/University 
PI Contribution Collaborating with Prof Sanjiv Narayan and his team for global AF mapping data analysis and model calibration with uncertainty.
Collaborator Contribution Collaborating with Prof Sanjiv Narayan and his team for global AF mapping data analysis and model calibration with uncertainty.
Impact https://pubmed.ncbi.nlm.nih.gov/35089057/ https://pubmed.ncbi.nlm.nih.gov/36934383/ https://pubmed.ncbi.nlm.nih.gov/38106921/
Start Year 2022
 
Title pcmlab/atrialmtk: Atrial Modelling Toolkit for Constructing Bilayer and Volumetric Atrial Models at Scale for Interface Foucs 
Description Examples for Atrial Modelling Toolkit for Constructing Bilayer and Volumetric Atrial Models at Scale. Please see our github: https://github.com/pcmlab/atrialmtk/. 
Type Of Technology Software 
Year Produced 2023 
Open Source License? Yes  
Impact Cardiac modelling at scale. Included as a use case for the Ecosystem for Digital Twins in Healthcare Project. 
URL https://zenodo.org/doi/10.5281/zenodo.10139305
 
Description AI and healthcare podcast for Queen Mary outreach event 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Schools
Results and Impact AI and healthcare podcast for Queen Mary outreach event with 70 online participants
Year(s) Of Engagement Activity 2024
 
Description European Virtual Human Twin CSA consortium 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Participating in the European Virtual Human Twin CSA consortium, through a cardiovascular use case. Running clinical engagement sessions.
Year(s) Of Engagement Activity 2023
URL https://www.edith-csa.eu/
 
Description Interview for EETimes Europe magazine 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Featured in a EETimes Europe magazine article on Digital Twins in healthcare: "Human Digital Twins Are Set to Revolutionize Medicine"
Year(s) Of Engagement Activity 2023
URL https://www.eetimes.eu/human-digital-twins-are-set-to-revolutionize-medicine/
 
Description Interview for national newspaper (Guardian) 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Featured in a Guardian article on Digital Twins in healthcare: "How digital twins may enable personalised health treatment"
Year(s) Of Engagement Activity 2023
URL https://www.theguardian.com/science/2023/nov/12/digital-twin-personalised-medical-treatment
 
Description Organised a Multi-scale & Multi-modality Digital Health Collaboration Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Organised a Multi-scale & Multi-modality Digital Health Collaboration Workshop at QMUL, funded by the Alan Turing Institute, with around 120 participants.
Digital health is a rapidly growing field. To personalize treatment approaches through digital health, we need to utilize all available data to provide mechanistic understanding and inform therapies at the patient-specific and population level. These data are collected using different modalities, at widely different spatio-temporal scales, creating large challenges and opportunities in Digital Health. This event aims to bring together researchers working with data across different scales and modalities, from basic scientists and clinicians, through to industry, using different types of computational techniques, from physics-based models to machine learning and digital health in industry. We will motivate exciting areas of development through a series of talks and posters, and then have sandpit sessions with a series of short pitches, with the aim of initiating new collaborations.
Year(s) Of Engagement Activity 2023
URL https://www.turing.ac.uk/events/multi-scale-multi-modality-digital-health-collaboration-workshop
 
Description Podcast interview for Naked Scientists 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Took part in a podcast on the Naked Scientists on: "Jet engines, hearts, and planets: the world of digital twins"
Year(s) Of Engagement Activity 2023
URL https://www.thenakedscientists.com/podcasts/naked-scientists-podcast/jet-engines-hearts-and-planets-...
 
Description Presented at European Heart Rhythm Association conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presented our research at European Heart Rhythm Association conference, Barcelona.
Year(s) Of Engagement Activity 2023
URL https://www.escardio.org/Congresses-Events/EHRA-Congress/Scientific-sessions