Tracking relevant nanomaterial transformations, exposure, uptake and effects in freshwater and soil systems

Lead Research Organisation: University of Birmingham
Department Name: Sch of Geography, Earth & Env Sciences

Abstract

Nanomaterials (NM) are very small particles much less than the width of a human hair. They are synthesised to provide different properties from larger forms of the same material and they are now used in a wide range of products. The properties that NMs provide include enhanced strength, an ability to reflect light or to react with other chemicals, and efficient electrical conductance. The value of NM is now very widely recognised and many companies are starting to use them in common consumer products, such as sunscreens and cosmetics, plus industry products, such as fabrics and building materials. This means that small quantities of NMs will reach the wider environment from everyday product use.

A great deal of recent research has gone into assessing the safety of NMs for humans and the environment. Most of these studies have looked at NMs in their newly-manufactured forms. It is increasingly apparent, however, that once NMs are released into the wider environment, they do not stay in their manufactured state - they change or 'transform'. Transformations can affect NM size, charge, their surface coatings and their ability to bind to other things such as soil particles or other chemicals. Transformations occur both during transfer to the environment (e.g. via sewage works) and once NMs reach the wider environment itself (rivers, sediments and soils). It is of huge importance that we understand the transformation processes and environmental fate(s) of NMs as they can affect their toxicity to humans and the environment.

The aim of this project is to study these NM transformations in more detail. We want to better understand whether different types of NMs are transformed in the same or different ways. We will conduct our work with different types of NMs, including those made from silver, titanium dioxide, polystyrene (a type of plastic) and graphene (a type of carbon).

We will first use laboratory methods that mimic the ways that NMs are changed during sewage treatment and in natural waters and soils to create the transformed materials that we will then study. We will test how these new and changed NMs affect a range of common aquatic and soil organisms and contrasting their toxicity in their "pristine" state with that after they have been transformed in the environment for different times. During our tests, we will measure how much of each material is taken up by the organisms into different tissues and whether this affects how they grow and reproduce. We will also measure the activity of different genes that are likely to be affected as organisms take up different NMs. We predict that each NM will be transformed in a way that changes its likelihood to cause harmful effects. Each test will be repeated using different soils and waters typically found across the UK, to determine how transformations vary under different conditions.

Finally, we will build custom-made, large exposure systems ('mesocosms') designed to mimic the rivers into which sewage works discharged and soils upon which sludge is spread, and populate them with a wide range of common UK native plants, invertebrates and fish (in the waters). By following these mesocosms for several months, we can simulate what may actually be happening in real UK environments in terms of the fate and effects of our transformed NMs. We will use the results to improve models able to predict how our transformed NMs will behave and the effects they will have. Taken together, our results should help us to predict the toxicity of NMs to help assure their safety, supporting the growth of the nanotechnology industry into the future. To this latter end we will run and coordinate a UK Nano-Academics & Regulators Platform, and will also present our results through major European Union (NanoSafety Cluster) and worldwide (Organisation for Economic Cooperation and Discussion) policy working groups, as well as to the public, so reaching as wide an audience as possible.

Planned Impact

Given the global economic importance of the nanotechnology industry - currently in $ billions worldwide - our findings will be of considerable interest (inter)nationally to a wide range of industries, government regulatory bodies, environmental protection groups and the general public. The major part of our impact activities will be centred on engagement with national and international government regulatory bodies, industry partners, and informing the wider public, as well as on training and incorporating outcomes into higher education.
Our work will benefit regulators and industry by delivering advanced understanding of realistic environment fate and effects of nanomaterials. This knowledge will focus on the mitigation of highly reactive nanomaterial surfaces afforded by environmental transformations, through detailed comparison of the bioaccumulation and toxicity of the pristine and environmentally-transformed forms under realistic chemistries and concentrations. Protocols, methods and models for assessing nanomaterials environmental transformations, and their effects on toxicity will be an outcome of our work. The central dissemination component for this information will be the UK Nano-Academics & Regulators Platform, which has been initiated by UoB and CEH over the last year with support from Defra, EA and CEFAS, and which will be formalised and secured via this project. The 6-monthly meetings of this group over the 3 year project will allow 2-way communication between regulators and academics/industry, facilitating coordination of UK responses to OECD and other international activity, briefing of the academic community of upcoming impact opportunities/research needs, and allowing the academics to relay relevant research outcomes directly to policy makers. This activity will be supplemented if applicable, a joint science-workshop with any other project(s) funded via the Highlight Topic call.
The applicants have considerable experience of commercial engagement via EU consortia, CASE studentships, the NERC-nanoKTN, and KTP and LINK awards with various industry partners. The project team also has a strong track record in actively supporting UK and international governments for screening and testing guidelines, including for nanomaterials, and policy development via a number of routes (e.g. Defra reports, ECHA workshops, OECD test guidelines, European Food Safety Authority, EU Nanosafety cluster). All of these links will provide conduits for knowledge sharing and for creating impact with industry and government bodies.
Results of this work are expected to make a significant scientific impact and major routes for scientific dissemination will be via relevant, high impact ISI scientific journals, and national and international conferences and workshops. The applicants will also disseminate knowledge from this research work via the press (through the CEH & NERC Press Office), to industry and regulators, and into higher education (UoB and UoEx directly, but invited lectures e.g. Oxford nano-summerschool). For wider public disseminations, we will run a two-day public outreach activity, which will include opportunities to view the soil mesocosm experiments, as well as, interactive sessions on the benefits and opportunities of nanomaterials and challenges in detecting nanomaterials in the environment.
The researchers on this project will be provided with the opportunity to develop their awareness of, and skills in, knowledge transfer, designating major roles for the project researchers in the UK Nano-Academics & Regulators Platform, and the outreach activities, as well as in science communication. The participating laboratories have impressive records in employment for their researchers that include permanent positions in academia (both nationally and internationally), and within various industries and government agencies. Our continued development of skilled staff for UK PLC will be a major impact of our project work.

Publications

10 25 50

 
Description The UoB team have been undertaking multi-generational studies in Daphnia magna exposed to the panel of environmentally aged versus freshly prepared TiO2 and Ag NPs (including different coatings and an Ag2S for comaprison) looking at exposure of the parent generation and then removing offspring from the exposure solution wihtin 24 hours of birth and tracking their development until reproductive maturity and the development and reproduction of their subsequent broods. These studies are being conducted under standardised conditons (OECD) with no added biomolecules, and for comparison under more realistic environmental conditions with humic substancees and secreted biomolecules present in the medium, as per our previous recommendations for best practice in safety evaluation of nanomaterials. Genomics analysis of 9 key genes associated with nanomaterial toxicity in Daphnia have been assessed. This was followed by a whole genome study (funded by H2020 NanoSolveIT) on the daphnid samples that had ben collected and frozen in the hope that additional funding could be obtained for these.

Ageing of the nanomaterials, in either salt-only or natural organic matter containing medium, dramatically reduces the toxicity of the nanomaterials to the daphnids. Severe effects were noted over multiple generations, and epigenetic changes also occured as observed in the offspring of the parent-only exposed organisms. Based on these findings we have made several recommendations regarding changes to the current OECD Daphnia reproduction test, including inclusion of mutliple-generations and assessment of bredding ability of offspring of exposed parents. The data is feeding into the development of Adverse Outcome Pathway models and revision of the chronic daphnia toxicity test for nanomaterials (OECD 2011) via the RISKGONE and NanoSolveIT H2020 projects. NanoSolveIT also extended the dataset by funding whole genomie studies on the nanomaterials exposed daphnids (the data are currently being processed and will be deposited in GEO database also and will be added to the outputs from this project in the next reporting period).
Exploitation Route These findings provide definitive evidence of the need to perform nanomaterials ecotoxicity and reproductive tests in the presence of appropriate and realistic concentations of humic substances and biomolecules. They will also provide the most complete analysis of the impacts on nanomaterials of a range of compositions and coatings on development and repdoduction of Daphnia magna, as well as the maternal transfer of effects arising from maternal exposure to subsequent generations, tracked over 5 generations. The data will feed into REACH reviews of testing for nanomaterials, as well as emerging pollutants for inclusion in the Water Framework Directive, as well as to potential UK-specific environmental legislation post Brexit.

The findings have been fed into the OECD process for revising the test guidelines for ecotox testing of nanomaterials and Iseult Lynch will be contributing to the revision of these guidelines (led by Canada). The data has led to the development of the first machine learning model for prediction of nanomateials toxicity to daphnia. The data is feeding into the development of Adverse Outcome Pathway models and revision of the chronic daphnia toxicity test for nanomaterials (OECD 2011) via the RISKGONE and NanoSolveIT H2020 projects. NanoSolveIT also extended the dataset by funding whole genomie studies on the nanomaterials exposed daphnids (the data are currently being processed and will be deposited in GEO database also and will be added to the outputs from this project in the next reporting period).
Sectors Agriculture, Food and Drink,Chemicals,Electronics,Environment,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL https://doi.org/10.1002/smll.202001080
 
Description To develop AI models and tools and support the growth and development of nanoinformatics SMEs and others working with machine learning and nanoinfromatics.
First Year Of Impact 2020
Sector Chemicals,Digital/Communication/Information Technologies (including Software),Environment,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic

 
Description H2020-EU.2.1.3: Risk Governance of Nanotechnology (RiskGONE)
Amount € 4,999,980 (EUR)
Funding ID 814425 (RIskGONE) 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 01/2019 
End 02/2023
 
Description Innovative Nanoinformatics models and tools: towards a Solid, verified and Integrated Approach to Predictive (eco)Toxicology (NanoSolveIT)
Amount € 6,098,527 (EUR)
Funding ID 814572 (NanoSolveIT) 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 01/2019 
End 02/2023
 
Title Daphnia images collection 
Description As a basis for developing a predictive model for daphnia toxcity, a database of over 8000 images of daphnia (Controls, and exposed to various pristine or medium-aged nanoparticles in either HH Combo or Class V water either continuusly exposed over 5 generations or parent (F0) only exposed with the F1 generation removed from exposure within 24 hours of birth) has been developed - each of the images has been manually scored for toxicity based on a set of descriptos (e.g. decrease in tail length, lipid deposits, morphological defects) and have then been scored by a machine learning algorithm to predict toxcity. The model and dataset are under review in the journal Small, and will be published shortly, along with a link to the dataset. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact This will be the first daphnia imaging model and will open up new ground in the prediction of toxicity of NMs and other emerging pollutants. 
 
Title Database of pristine and aged TiO2 and Ag nanoparticle toxicity to daphnia magna over multiple generations 
Description An extensive dataset on 9 nanoamterials, each pristine and aged for 6-months and 2-years in medium. Three media were used - HH Combo and two representative waters. Contains full life histroy trait data (number of offspring, time to each brood, number/brood etc.) as well as morphologicla and image data, over 5 generations, as well as proteomics, trasnscriptomics and uptake data at selected timepoints. Also inlcudes characteriation data for the nanomaterials. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact We are working on publihsing data paper describing the whole dataset, but likely this will be in parts - the first part is already submitted as a Data in Brief paper accompanying a Chemosphere paper on the results, which we expect to be in press later this year. 
 
Description Bioinformatics analysis of the proteomics and targeted genomics data 
Organisation Lawrence Berkeley National Laboratory
Country United States 
Sector Public 
PI Contribution The large dataset generated by the UoB team offered excellent material for application of the state of the art bioinformatics techniques developed by the colleagues at Berkeley.
Collaborator Contribution Prof. Ben Browne and his team performed the bioinformatics analysis of the datasets, and together we identified epigenetic changes in offspring persisting several generations after the parental exposure to nanomateirals (TiO2 and Ag), as well as finding evidence of accelerated ageing in the exposed organisms. Effects were ameeliorated or removed entirely in the presence of natural organic matter and by ageing of the nanomaterials in the various media.
Impact 3 co-authored publications in final drafting stages.
Start Year 2018
 
Description Development of predictive models based on the multi-generational daphnia data 
Organisation Novamechanics Ltd
Country Cyprus 
Sector Private 
PI Contribution The postdoctoral researcheron the project has generated the most complete and comprehensive set of data on NM exposure to daphnia magna over multiple generations, including images of the daphnia along the exposure duration and TEM images of the NMs over time for assessment of their ageing.
Collaborator Contribution Novamechanics are a chemoinformatics and nanoinformatics SME, and they are developing a predictive model based on the daphnia images and the toxicity data that we hope will enable prediction of multi-generation toxicity with fewer experimetnal inputs, and potentially also be predictive of epigenetic effects. We are also using the nanomaterials imaging data to develop a tool for assessing the agglomeration and ageing of nanomaterials, as well as integrating across the whole set of data for development of a quantitative structure activity model for the prediction of nanomaterials toxicity to daphnia magna and the role of particle coating, medium composition and particle ageing in this.
Impact 2-3 papers in early draft form (as these will come after the publication of the primary data papers, so we have been focssed on completing the primary data papers first, or which there are 5 from this 2 year project).
Start Year 2018
 
Title Deep learning models for predicting the effects of exposure to engineered nanomaterials on Daphnia Magna 
Description A computational workflow based on arificial intelligence (AI) and deep learning methodologies has been developed to first detect, isolate, and classify regions of interest on the Daphnia magna images where specific malformation occurs as a result of exposure to nanoamterials, and then used to assess the type and the severity of malformations compared to the unexposed control daphnids. The SSD object detection model and the three residual CNN classification models (three-class and five-class abdomen/claw prediction models and the three-class heart prediction model) have been containerized in a Docker container available through https://hub.docker.com/r/nanosolveit/deepdaph-models. The complete workflow is being integrated into the NanoSolveIT cloud platform as a user-friendly web application, which is accessible through https://deepdaph.cloud.nanosolveit.eu/. The application is also available through application programming interfaces (APIs) that allow further integration with other services within the NanoSolveIT cloud platform but also with external services. The API documentation can be found at https://deepdaph-api.cloud.nanosolveit.eu/. 
Type Of Technology Webtool/Application 
Year Produced 2020 
Open Source License? Yes  
Impact This is the first attempt reported to develop validated deep learning predictive models to an extensive ecotoxicological study for predicting the effects of the direct or parental exposure to ENMs on Daphnia. The proposed models can automate time-consuming procedures needed for image classification by human experts and thus accelerate hazard assessment and facilitate the development of safe-by-design ENMs. Future extension of the work will allow adverse effects prediction for subsequent generations based on parental exposure images reducing the time and cost involved in long-term reproductive toxicity assays over multiple generations. 
URL https://deepdaph.cloud.nanosolveit.eu
 
Title Ecotox Hazard Model - Acute Daphnia toxicity 
Description Daphnia magna, a keystone species used in regulatory testing, are used for acute toxicity testing based on the OECD 202 Test Guideline (note this is currently being updated for use with nanomaterials). The dataset used to develop the models consisted of dose-response data from 11 NMs (5 TiO2 NMs of identical cores with different coatings, and 6 Ag NMs with different capping agents/coatings) each dispersed in three different media (a high hardness medium (HH Combo) and two artificial waters with different ionic strengths and natural organic matter contents. The available numerical descriptors (TEM size, DLS size, electrophoretic mobility, zeta potential at pH = 7.6-7.8, medium conductivity, tested concentration) were normalized (by applying the Gaussian normalization method) in order to guarantee their equal contribution to the analysis. The grouping hypothesis is that environmental ageing of nanomaterials will reduce their ecotoxicity to Daphnia magna compared to the freshly dispersed nanomaterials, and that this will be more pronounced for the media containing natural organic matter than for the salt-only medium. To evaluate the adequacy of this hypothesis, we used the k nearest neighbours (kNN) methodology by dividing the initial dataset into subgroups of nanomaterials of the same age (i.e., freshly dispersed versus 2-year aged) and developing two separate models in each subgroup. Validation assessed compliance of the models with the entire set of OECD principles, presented as a QSAR model report form (QMRF) report, in addition to internal validation via the leave-one-out (LOO) and leave-ten-out (L10O) cross-validation (CV) method applied to the training set. 
Type Of Technology Webtool/Application 
Year Produced 2021 
Open Source License? Yes  
Impact This is the first model for prediction of ecotoxicity of nanomaterials in daphnia - this is a regulatory endpoint so having a read-across model to assess acute toxicity of pristine nad environmentally aged nanomaterials is a critical first step. We are now working towards validation of the model via ECVAM to have it approved for use in regulation. 
URL https://ecotox.cloud.nanosolveit.eu
 
Description 3rd meeting of the Nano-environment academics group with Defra and the Environment Agency (Wednesday 24 February 2016) hosted by UoB 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact This was the 3rd meeting of the group, initiated by the UoB PI (Lynch) as part of her efforts on moving to the UK to understand the policy landscape in the UK and how to feed her research into it. Funding to support these meetings were written into the NERC Highlight topic award as part of our pathways to impact, and as such, this was the first meeting hosted via the NERC project, and as such we provided an opportunity for all 3 projects funded under the highlight topic to present their porject outlines in order to identify synergies and potential opportunities for collaboration.

The agenda was as follows:
9:00-9.30 Coffee and networking
9.30-10.00 Welcome and introductions including Tour de Table
10.00-10.45 Updates from Defra and Environment Agency on current concerns / activities - to include
• European Commission work on "nanodefinition"
• NANoREG and ProSafe
• Environmental NanoScience Initiative (ENI) -next steps (following the "finale" event on 10 December 2015)
• OECD and ECHA work on testing methods
10.45-11.00 Coffee
11.00-12.30 Short presentations from academics including the 3 new NERC projects (perhaps linked to the activities listed above)
12.30-13.30 Lunch
13.30-15.00 Short presentations from academics - nano and health
15.00-15.15 Coffee
15.15-16.00 Next steps and date/topic for next meeting.

As with previous meetings, the focus was on feeding UK nanoenvironmental and health science into the ongoing policy activites, and ensuring that the UK position is science-based and informed by the most recent academic findings and research outputs. The meeting was Chaired by Richard Vincent from Defra and Iseult Lynch (UoB).

Due to significant changes in Defra, and the retirement of Richard Vincent in February 2017, we are still trying to agree a date for the 2017 meeting.
Year(s) Of Engagement Activity 2016
 
Description 4th meeting of the Nano Environment Academic Group on10th November 2017 hosted by University of Birmingham 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact 50 participants from regulatory organisations (Defra, EA, PHS, HEA), industry and academia cam together to discuss UK research and input to UK policy related to nanomateraials in the environment. Key areas of focus (ongoing) included UK's contrinution to revision and updating of OECD guidleines for nanomaterials safety testing, via the so-called Malta project, and how to ensure that we have a foot at the table. Topics on microplastics were also discussed, as well as nanoinformatics. 3 new UK-lead EU projects (1 led by Isuelt Lynch called NanoCommons) were also presented.
Year(s) Of Engagement Activity 2017
 
Description 5th meeting of the Nano Environment Academic Group on 22nd November 2018 hosted by University of Birmingham 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Annual forum for exchange of information and immediate and future priorities between UK acadmics researching the environmental implications of nanomaterials and microplastics and the government agenciess tasked with regulating and monitoring these potential pollutant. Participants included DEFRA, EA, PHS, HSA, COFAS and other related organisations.
Year(s) Of Engagement Activity 2018
 
Description Nomination to Royal Society of Chemistries Ad hoc Forum on Chemicals Regulation post Brexit & 1st meeting in January 2018 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact The UK's decision to leave the European Union means that the regulation of chemicals is set to change. The EU Withdrawal Bill aims to transpose EU laws relating to chemicals into UK law but there remains considerable uncertainty around decision-making and the principles of regulation the UK wants to follow. There are potential risks to industry and to society associated with ineffective changes to chemicals regulation, but also potential opportunities if the UK can continue to be a world leader in this area and have increasing roles on the international stage. The Royal Society of Chemistry has established an ad hoc Chemicals Regulation & Brexit Advisory Forum to develop a science-based response and position paper to feed into policy on this critical and important topic. This will focus on the immediate issues that need to be addressed for the transition phase, and the longer term challenges and opportunities arising from non-membership of EU, information sharing arrangements etc.
Year(s) Of Engagement Activity 2018