Regulation of DNA damage signaling by autophagy in senescence.

Lead Research Organisation: University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci

Abstract

Cell senescence is a stable proliferation arrest of damaged cells that prevents the onset of cancer. Paradoxically, cell senescence can also contribute to tissue ageing, by preventing tissue renewal and causing tissue inflammation. Triggers of cell senescence include DNA damage and dysfunctional mitochondria (sites of cellular energy production). Appropriate healthy ageing (i.e. a healthy lifespan without cancer) depends on appropriate balance of the senescence program.

Autophagy is a cellular recycling process that degrades and eliminates damaged structures from the cell. Our preliminary data indicates that autophagy serves to suppress accumulation of DNA damage and dysfunctional mitochondria in the cell. Hence, we hypothesise that autophagy controls - and perhaps dampens - onset and/or maintenance of cell senescence, and so tissue and organismal ageing.

By exploiting the complementary strengths of Drs. Passos and Adams we will investigate this hypothesis in cell culture and mouse models.

Progress in these studies will facilitate development of biomarkers of interventions to promote healthy ageing.

Technical Summary

This application investigates cellular and molecular mechanisms that control cell and tissue ageing. Cellular senescence is an important tumor suppression mechanism, but also contributes to tissue and organismal ageing. DNA damage signaling, dysfunctional mitochondria and reactive oxygen species (ROS) are established triggers and effectors of the senescence program.
Autophagy is a cellular recycling process, whereby double membrane vesicles, called autophagosomes, sequester cytoplasmic content and organelles and deliver it to lysosomes for degradation. Like senescence, autophagy is implicated in control of tumor suppression and ageing. In fact, recent studies have demonstrated a role for autophagy in control of cell senescence. However, the precise role played by autophagy and whether it serves as an activator or repressor of senescence is unclear. To understand the contribution of autophagy to tumor suppression and ageing, it is essential to understand its role in cell senescence.
Building on extensive preliminary data from the labs of Drs. Adams and Passos, we propose that autophagy antagonizes the senescence program in at least two ways. First, we hypothesize that autophagy suppresses accumulation of dysfunctional mitochondria, thereby suppressing accumulation of ROS and DNA damage. Second, we hypothesize that autophagy degrades fragments of DNA damage-containing chromatin that accumulate in the cytoplasm of senescent cells. By suppressing such DNA damage signals, autophagy antagonizes onset or maintenance of cell senescence and tissue aging. We will investigate these hypotheses through the following two Aims.

Aim 1. Investigate the role of autophagy in suppression of DDR via elimination of dysfunctional mitochondria and ROS.

Aim 2. Investigate the role of autophagy in degradation of senescence-inducing cytoplasmic chromatin fragments (CCF) containing damaged DNA.

Planned Impact

------Who will benefit from this research?

The pharmaceutical and drug discovery industry; government policy makers; the wider general public.
The importance of research on ageing is recognised as a high strategic priority not only by BBSRC but also by other UK Research Councils, government departments and other agencies. There is a need for much deeper understanding of the biology of ageing, if society is to appreciate how to secure the best possible lifelong health and prepare for a world in which a much greater fraction of the population will be old.

------How will they benefit from this research?

Research needs to be done at many levels, ranging from fundamental mechanistic studies through to translation into healthspan and quality of life for older people, and economically important innovation in a broad range of business sectors. It is well accepted that ageing is an extremely complex process which involves the interaction of many gene products and biological process. The research programme presented in this application will allow the understanding of basic mechanisms of ageing and ultimately aims to identify potential targets for therapies to ameliorate the ageing process and age-related diseases.

The pharmaceutical and drug discovery industry will benefit from an improved understanding of the molecular basis of senescence-associated tissue ageing and tumour suppression. This will aid them in the rational selection of target molecules for drug discovery efforts. Possible opportunities for engagement with industrial partners and commercialisation will be explored with support from existing mechanisms at both Newcastle and Glasgow university (see pathways to impact).
Government policy makers will gain, indirectly, from an improved understanding of the fundamental mechanisms underpinning the ageing process. It is critical that future decisions can be traced back to a solid scientific literature particularly when society is facing an unprecedented demographic shift resulting in a remarkable increase in the fraction of older people.
The general public will benefit from an improved understanding of the molecular basis of cancer, ageing and age-associated disease, to help them make better lifestyle choices.

Publications

10 25 50
 
Description In collaboration with Joao Passos, Newcastle, we showed that inactivation of mitochondria - cellular energy factories - reduces cellular stress and nuclear changes characteristic of cell stress and aging. We showed that elimination of mitochrondria can decrease cellular stress - suggesting that mitochondria can be a target to suppress cell stress and promote healthy aging.
Exploitation Route Elimination of mitochondria can promote healthy cell ageing.
Sectors Education

Healthcare

Pharmaceuticals and Medical Biotechnology

URL http://chromatin.wordpress.com
 
Description The findings are "basic research". I have presented ideas and discussions related to this work at public engagement events, e.g. in discussions with the BBC on a program they are making on "healthy aging" and in a "pint of science" presentation.
First Year Of Impact 2016
Sector Creative Economy,Education,Healthcare
Impact Types Societal

 
Description I am a founding member of Glasgow Ageing Research Network (GARNER)
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Participation in a guidance/advisory committee
URL http://www.gla.ac.uk/researchinstitutes/bahcm/research/sigs/garner/
 
Description Invited Speaker at US NIA strategy mtg: Advances in Geroscience: Impact on Healthspan and Chronic Disease
Geographic Reach North America 
Policy Influence Type Contribution to a national consultation/review
URL http://chromatin.files.wordpress.com/2008/08/cancer-and-aging.pdf
 
Title Application of WIMSi for DNA methylation analysis 
Description This is a novel tool for analysis of DNA methylation data, developed by our collaborators at Washington University, St Louis - Dr. John Edwards. We collaborated to apply this new tool to analyze whole genome bisulfite DNA sequencing data. 
Type Of Material Technology assay or reagent 
Provided To Others? No  
Impact We demonstrated the utility of this novel method, through its application to biological datasets, generating 2 publications : Cruickshanks et al, 2013 and Lund et al, 2014. 
URL http://epigenomics.wustl.edu/WIMSi/
 
Title Illumina DNA sequencing facility 
Description We established the Illumina DNA sequencing facility at Beatson Institute for Cancer Research. 
Type Of Material Technology assay or reagent 
Year Produced 2012 
Provided To Others? Yes  
Impact The availability of next generation sequencing at BICR has accelerated many labs projects. 
 
Title Senescence-epigenome 
Description A shared database of whole genome sequencing data of the epigenome of senescent cells, shared by my lab, Shelley Berger's lab Philadelphia, and made available to other researchers in the field, including John Sedivy, Nicola Neretti and others. 
Type Of Material Database/Collection of data 
Year Produced 2010 
Provided To Others? Yes  
Impact The shared data between labs has been invaluable for hypothesis generation. 
 
Description Collaboration with Dr. Joao Passos, Newcastle 
Organisation Newcastle University
Country United Kingdom 
Sector Academic/University 
PI Contribution Joao Passos and I are collaborating on this BBSRC funded project grant.
Collaborator Contribution Joao Passos is an expert in mitochondrial biogenesis and autophagy. He is helping us to determine the impact of autophagy on DNA damage signaling.
Impact Correia-Melo, C., Marques, FDM., Anderson, R., Hewitt, G., Hewitt, R., Cole, J., Carroll, BM., Miwa, S., Merz, A., Rushton, MD.,, Charles, M., Jurk, D., Tait, SW., Czapiewski, R., Birch, J., Greaves, L., Nelson, G., Bohlooly-Y, M., Vidal-Puig, A., Rodriguez-Cuenca, S., Mann, D., Saretzki, G., Adams, PD., von Zglinicki, T., Korolchuk, VI., Passos, JF. Mitochondria are required for the pro-aging features of the senescent phenotype. EMBO J., 2016, Feb 4. pii: e201592862. [Epub ahead of print]
Start Year 2013
 
Description Lab data presented at Glasgow Science Centre 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact My lab's work on nevi and melanoma is permanently presented on a poster by the Clyde River outside the Glasgow Science Centre. This work describes the relationship between benign nevi and melanoma and how we are working to better understand this for prevention of melanoma.
Year(s) Of Engagement Activity 2015,2016
 
Description Media interest 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact I have conversations with lay members of the public and friends about the article and the work

Lay public increased awareness of cancer research
Year(s) Of Engagement Activity 2011
 
Description Media interest 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was interviewed by "The Scientist" magazine on a recent paper describing 3D chromatin conformation in senescent cells.
Year(s) Of Engagement Activity 2016
URL http://www.the-scientist.com/?articles.view/articleNo/45252/title/Aging-Shrinks-Chromosomes/
 
Description Meeting lay public and donors for Glasgow Wolfson-Wohl Translational Cancer Research Center 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact About 20 people attended for a short presentation, discussion and bldg tour.

Funds raised and interest generated amongst public.
Year(s) Of Engagement Activity 2012
URL http://www.gla.ac.uk/about/givingtoglasgow/beatsonpebbleappeal/
 
Description Meeting with BBC producers 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact Met with BBC producers - Paul Overton and Tas Maqsood -, spoke on phone and exchanged emails re. a BBC show in production on healthy aging, biomarkers to measure healthy aging and interventions to promote healthy aging.
Year(s) Of Engagement Activity 2016
 
Description Pint of Science talk to public 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact I presented an informal lay talk on cancer and aging - specifically the age dependence of cancer and the importance of diet and exercise to promote healthy aging and suppression of disease such as cancer.
Year(s) Of Engagement Activity 2016
 
Description Tweeting from Aging Cell twitter account 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I regularly Tweet from the Aging Cell Twitter account. Followers are mostly lay public, non scientists. Often Tweets stimulate re-tweets and debate.

Often Tweets stimulate re-tweets and debate.
Year(s) Of Engagement Activity 2013