A novel neural pathway linking visual input and sleep status

Lead Research Organisation: University of Leicester
Department Name: Genetics

Abstract

At least 30% of adults suffer sleep-related problems. Sleep disruption can contribute to a variety of medically-relevant problems, including cardiovascular and neuropsychiatric dysfunction. Environmental light and visual stimuli affect both sleep quantity and quality in various animals including insects, birds, mammals and humans. Although the biological basis of such a widely observed phenomenon remains unclear, the latest research and technical advances in the fruit fly, Drosophila, have made it feasible to identify the underlying neural mechanisms. Recently, we have demonstrated that a gene called Neurocalcin is required to modulate neuronal activities in the fly visual system for robust night-time sleep. We plan to use cutting-edge genetic, behavioural and imaging techniques to investigate how Neurocalcin interacts with other genes to control neuronal properties and discover the neural pathways that the visual system communicates with the central brain to regulate sleep. This project promises to address an important knowledge gap in sleep research. Moreover the human homologues of Neurocalcin are also expressed in the eyes and the brain. Therefore, the results from this project may provide insight into how natural and artificial light-related visual stimuli contribute to, and disturb, human sleep.

Technical Summary

Sleep disorders are prevalent in the modern 24/7 society and contribute to several medical problems, including cardiovascular, psychiatric and neurodegenerative diseases. A major challenge in sleep research is to determine the relative contributions of genetic versus environmental factors that underlie sleep disorders. It is well established that levels of daylight and daytime visual stimuli have profound effects on the sleep homeostat. The fruit fly, Drosophila, has a proven record as a powerful research tool to provide mechanistic insights into sleep disorders. Importantly, recent research advances in identifying both sleep centres and their potential neural connections to visual system have set the stage for investigating the functional neural pathway by which visual inputs modulate sleep. Against this background, our preliminary data show that a calcium binding protein, Neurocalcin (Nca) is required to modulate neuronal activities in the fly visual system for robust night-time sleep. This finding leads to an exciting hypothesis that Nca-expressed visual domains drives night-specific sleep. Using the latest behavioural, genetic and imaging tools, we will test this hypothesis, and define the role of Nca-linked molecular networks in regulating sleep, and the neural pathways connecting visual system and sleep centres. The project investigate an emergent research direction and the yield results promise to address a knowledge gap in sleep research. Moreover since Nca protein shares >85% amino-acid identity with its mammalian homologues, this proposal will provide a roadmap for investigating conserved molecular mechanisms underlying visually-driven sleep and pave the way for follow-up investigations to validate the role of Nca in mammalian sleep. This may foster further research that significantly advances the understanding in how natural and artificial light-related visual stimuli contributes to human sleep disorder and related medical conditions.

Publications

10 25 50
 
Description Does sleep disruption affect epigenetic ageing in an insect model? (CO-I)
Amount £20,573,399 (GBP)
Funding ID BB/Y513222/1 
Organisation University of Leicester 
Sector Academic/University
Country United Kingdom
Start 11/2023 
End 02/2025
 
Title Transgenic Drosophila lines 
Description The project so far generated two sets of transgenic fly lines: • A panel of specific transgenic Gal4 labelling subsets of TuBu neurons in isogenic background: R25D01-Gal4, R52B02-Gal4, R75D03-Gal4, R88A06-Gal4, R83H09-Gal4, R23E11-Gal4, R92H07-Gal4 • Three new transgenic fly lines: gmr-Gal4;R88A06-Gal4, gmr-Gal4;lexAopKir2, gmr-Gal4;lexAopTrpA 
Type Of Material Technology assay or reagent 
Year Produced 2024 
Provided To Others? Yes  
Impact These new transgenic lines were presented in research conferences (see engagement activities) and are available to share with other researchers upon request. Currently the lines are not been requested by other researcher but their availability to my lab has facilitated the project investigation in the follow way: • The isogenisation of the TuBu neurons specific labelling lines has allowed us to rapidly screened sleep behaviour using these lines and identified the candidate visual domain that underlying visually driven sleep, which is the Aim 2 of the project • The gmr-Gal4;R88A06-Gal4 enable us to simultaneously manipulate neural activities in Drosophila photoreceptors and the visual domain TuBu neurons, while gmr-Gal4;lexAopKir2, gmr-Gal4;lexAopTrpA allows us to manipulate neuronal activity in Drosophila photoreceptor 
URL https://www.kofanchenlab.net/methods/tool-sharing
 
Description Investigation of Neurocalcin centred genetic interaction 
Organisation University of Leipzig
Country Germany 
Sector Academic/University 
PI Contribution This collaboration overlaps with the Aim 3 in the awarded BBSRC project in exploring Nca-centred genetic network. The collaboration is based on the common research interests between Dr Nicole Scholz's and my labs in understanding Neurocalcin signal pathway underlying behaviour. My lab used our expertise in monitoring Drosophila sleep and investigate if mutants in candidate genes isolated form Dr Nicole Scholz lab in Drosophila resulted in sleep loss phenotype, as well as investigating sleep profile in Neurocalcin (Nca) and candidate gene double mutant in order to clarify the genetic interaction.
Collaborator Contribution The Scholz lab initiated the investigation of neurogenetic network underlying mechanical reception. Among their candidate genes within this network, they identified Nca as potential genetic interactor. In searching for the additional behavioural evidence underpinning genetic interaction, Dr Scholz initiated the contact and established our collaboration. The Scholz lab has generated the candidate gene mutants as well as candidate gene, Nca double mutants into an appropriate background.
Impact No research output is yet generated via this collaboration, but the ongoing investigation in sleep profile of candidate gene as well double mutants has almost complete. Further collaborative discussion is ongoing regarding to the publication plan.
Start Year 2023
 
Description ENTO meeting 2023 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The Ento 23 is the annual meeting hosted by Royal Entomology Society to allow entomologists interact and present their research work to stimulate new idea and discussion among international experts. My purpose for attending this meeting is to showcase and obtain feedback for research related to the awarded BBSRC project. Particularly to explore my finding of genetic network underlying night time sleep in an ecological relevant context. This is achieved by presenting a poster by myself. The poster presentation has gathered feedback from non-Drosophila researchers and raise potential investigatory direction into relationship between sleep and seasonal migratory behaviour.
Year(s) Of Engagement Activity 2023
URL https://www.royensoc.co.uk/event/ento23/
 
Description Interview for Total Internal Reflection (TIR) science blog 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was invited to provide a reflection on how my journey into research began as part of series revealing diverse career paths among BIPOC scientists in the science blog, Total Internal Reflection (TIR). This blog aims to reveal the human side of scientists and their career experience from first-hand examples. TIR has a reach of >30000 views over 2023. Although there is no individual breakdown of number of views for each post, my interview is among the 20 posts of the year. This invitation came due to my engagement on the social mediate platform Mastodon (see another engagement activity entry). As the result of this blog, I was contacted by dept BIPOC PhDs to discuss my research career path that may not be following typical mode.
Year(s) Of Engagement Activity 2023
URL https://totalinternalreflectionblog.com/2023/08/20/myscimoment-ko-fan-chen-%e9%99%b3%e5%85%8b%e5%b8%...
 
Description Social media networks: Twitter/X/Mastodon 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Social media platform activities are part of the planned engagement for the awarded BBSRC project; this is to increase exposure of the project research activities, to enhance research communication to general public as well as to boost general recruitment of younger generation of scientists. I have set up Twitter/X account (@kofanchen_lab) since 2020 and Mastodon account (@kofanchen@drosophila.social) since late 2022. So far, my follower numbers are modest and growing with 384 Twitter/X and 399 Mastodon followers. My main activities on Twitter/X are to highlight/repost new research papers, to advertise and showcase lab news and positions, and to discuss latest research in the science community. Following the waves of scienceTwitter exodus, my engagement on Twitter/X has declined but increased significantly on Mastodon from 2023. The engagement like those on Twitter/X are maintained in my Mastodon account but broader genres are now included, such as open science discussion, academic career experience as well as more discussion about sleep research with non-science netizen (e.g., https://drosophila.social/@kofanchen/1107621346482 12933, in which I draw interaction between researchers and science communicators). Whereas the view data is not available in Mastodon to compare with Twitter, arguably since migration to Mastodon, my engagement with general public is increased: 29% of my Mastodon follower are non-scientist, whereas nearly 100% of Twitter/X follower are biologists. This interaction directly contributes to my invitation to the interview by TIR science blog (see other engagement entry). Another indicator for higher exposure of my research via combined social media activities is that I have double the requests for my lab internship placement from two to five between 2022-2023 and 2023-2024, most of them reported noticing my accounts and then reaching lab website.
Year(s) Of Engagement Activity 2023,2024
 
Description UK clock club meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact The UK clock club is a twice a year meeting to allow circadian and sleep researchers interact and present their work to stimulate new idea and discussion among national experts. The main purpose for my lab to attend this meeting is to showcase and obtain feedback for research related to the awarded BBSRC project. This is achieved by presenting posters by the named postdoc Yu-Chien Hung and my PhD student Mehran Akhtar. The latter investigates the relationship between vision disorder and sleep, which is complementary to the awarded BBSRC project. Mehran also won a travel award due to his Data Blitz talk (see Award entry).
Year(s) Of Engagement Activity 2023
URL https://www.bioclocks.uk/news/record-breaking-clock-club-in-cambridge!