Exploring bias in platelet P2Y1 receptor signalling: host defence versus haemostasis.

Lead Research Organisation: King's College London
Department Name: Pharmaceutical Sciences

Abstract

Blood contains cells to kill germs. In order to defend us against germs, they need to leave the bloodstream and travel through the inflamed tissue to reach the germs, engulf them and secrete materials that help kill them. The body does this via a protective mechanism called the inflammatory response. Sometimes this inflammatory response occurs inappropriately in diseases unrelated to infection, which then unfortunately causes self-inflicted harm to the body, for example in asthma, chronic obstructive pulmonary disease (COPD, mostly caused by smoking), or inflammation caused by sudden trauma. Previously, our research group have discovered that white blood cells called leukocytes require the help of yet another blood cell type, the platelets, to be able to migrate from the blood stream to sites of inflammation and infection. Platelets are best known for forming blood clots, thereby preventing us from bleeding to death every time we have an injury (this process is known as haemostasis), but because they also guide the white blood cells to reach inflamed organs as well as helping the white blood cells to fight and kill germs, they are also indispensable for our immune system. Yet, the processes of haemostasis and inflammation are distinct. The main aim of our research project here is to learn how platelets get activated in response to the protective process of inflammation, without affecting the essential process of haemostasis, because this might lead to excessive bleeding, or blood clots.
Research into how platelets become activated during inflammation is important for basic science, but also because current medical treatments are just not good enough. We require better medicines - because 5.4 million people in the United Kingdom suffer from asthma, and 1.2 million suffer from COPD. Despite better management of patients, and the introduction of new drugs, 3 people die every day in the UK as a result of an asthma attack, 80 people die every day as a result of COPD, and people who have inflammation of the lungs associated with acute trauma or pneumonia have between a 20 and 50% death rate. If we can find new ways of modulate platelet activity at the site of inflammation, without affecting normal blood clotting, we might be able to create new medicines that improve the health of millions of people.
Platelets express proteins called purinergic receptors that are important for switching platelets 'on' during blood clotting, but when certain types of purinergic receptors get switched 'on' in an inflammatory environment, they boost activity to help fight germs instead of forming blood clots. We will research how a particular purinergic receptor (P2Y1) works to control platelet activity during inflammation, compared to their function in blood clotting. To do this, we have assembled a team of scientists from within King's College London, with different areas of expertise (computer modellers, synthetic chemists, pharmacologists) to create new molecules that are designed to change P2Y1 function. Receptors change shape continuously, and depending on what shape they are, when activated, platelets will function differently based on the shape or conformation of the receptor. The new molecules will be designed to bind to P2Y1 when it is a particular shape. We hope to change selective functions of platelets necessary for inflammation, to fight infection, or for clotting of blood. Together, we will create a library of these molecules to be used as research tools (called 'biased' agonists-activation antagonists-blocking) after computer-aided modelling. We will measure the functions of platelets in the presence of these agonists and antagonists, and their effects on white blood cell activation, both in the test tube and in actual inflammation and infection. This research project will help us and other scientists understand exactly how P2Y1 on platelets works during inflammation compared to blood clotting.

Technical Summary

The activation of platelets during inflammation affects their adhesive properties, motility, the release of soluble anti-pathogen factors and their communication with other immune cells to coordinate the innate immune response to infection, or inappropriately in inflammatory disorders, for example asthma and COPD. These functions are distinct to platelet function during haemostasis. Similar activities in leukocytes are controlled by signalling molecules of the Rho family GTPases (RhoA, Rac1), which can be activated by purinergic (P2Y) receptors. Platelets express P2Y1, the role of which in platelet aggregation and haemostasis is well established, yet we have shown that the activation of P2Y1, signalling via RhoA and Rac1 in platelets is required for platelet-dependent neutrophil recruitment, and other platelet functions pertinent to inflammation - however this signalling pathway is ultimately redundant in platelet activation during aggregation. It therefore appears that functional selectivity can occur with platelet P2Y1, dependent on the local tissue environment, to dictate platelet responses (function). The incidence of biased agonism for P2Y1 is novel, but has been described elsewhere for related GPCRS. To understand how platelet P2Y1 might act in a selective manner, we will synthesize novel agonists and antagonists as experimental tools for the orthosteric binding site at P2Y1, and evaluate their potential to influence biased signalling (whether they confer a positive, negative or neutral bias to inhibiting platelet function in the context of inflammation, host defence, and haemostasis) using particular in vitro and in vivo assays to predict platelet activity in the context of respiratory inflammation and infection compared to haemostasis (aggregation, and thromboemboli). This will determine the suitability of targeting platelet P2Y1 as a novel therapeutic area to modulate the inflammatory response.

Planned Impact

Who might benefit from this research?
The benefits of our research are of prime impact in the field of platelet pharmacology. However, the impact stretches well beyond this into general understanding of platelet physiology and its modulation via purinergic receptors. This has the potential to stimulate the development of other tool compounds, to address fundamental questions in inflammation and immunity research. Identification of academic communities has been discussed in the 'academic beneficiaries' section.
Pharmaceutical and biotechnology companies are very active in researching pathways that modulate leukocyte recruitment and activation, to get a mechanistic insight and for the development of either anti-inflammatory drugs or conversely drugs to boost the immune system to fight infections. Similar therapeutic strategies are being pursued for combating cancer metastasis.
The concept that platelets play important roles in processes pertinent to inflammation, infection, autoimmune diseases and cancer has gathered a very marked momentum (using the research terms ['platelet' and 'inflammation'] on Pubmed, 16,000 papers have been published since 1970, with 1300 since the start of 2018), to the extent that clinical trials are currently evaluating the use of established anti-platelet drugs for orphan diseases. These clinical groups require a strong pre-clinical insight into the likely importance of the various receptors and platelet signalling pathways of relevance to inflammatory responses, rather than aggregation and haemostasis.

How will they benefit from this research?
Pharmaceutical companies will enhance their knowledge and research capacity as we publish novel pathways that uncover the existence of selective platelet signalling pathways to functions around the inflammatory response offering a strong avenue of inquiry. An element of risk is taken away from interested companies, since we would be conducting the necessary early discovery research to characterize the suitability of targeting P2Y1 and platelets to develop antagonists as novel anti-inflammatory drugs or conversely as potential targets for novel agents (agonists) to boost the immune response to fight infection. Indeed, 3-4 companies have synthetic chemistry programmes to modulate P2Y1, but these are currently placed as novel anti-platelet therapies for cardiovascular disease. They might deserve evaluation for their anti-inflammatory properties. Companies could benefit from having access to our library of novel P2Y1 agonists or antagonists, or our expertise that we will gain at evaluating biased signalling of P2Y1 (as a concept), or the production of experimental tools (as a process) to create early lead compounds to influence design iteration.
The exploitation of biased signalling pathways in disease (especially with respect to purinergic receptors) could create important novel drug target opportunities, for the rational design of compounds with more diverse properties than traditional pharmacological concepts predict. Our research will provide practical evidence as to how these strategies should move forward with regards to purinergic receptor pharmacology. We also have the environment, skills, and plans to exploit our novel pharmacology.
There are at least 2 phase II clinical trials investigating P2Y12 antagonists - for example, prasugrel, and clopidogrel as anti-inflammatory/ respiratory drugs at this present time (Clinicaltrials.gov identifiers NCT01305369, and NCT01955512, respectively). Our preliminary data and publications predict that trialling established anti-platelet drugs designed for the treatment of cardiovascular disease is a misinterpretation, or over-simplification of how platelet involvement in host defence or inflammatory diseases should be exploited for patient wellbeing. Thus, our research publications will inform clinicians and national health authorities as to the likelihood of success of their choice of trial strategies.
 
Title Creation of PF4creP2Y1loxP colony 
Description Work package C: P2Y1LoxP mouse colony creation by KCL Genome Editing and Embryology Core facility (GEEC) has progressed with F0 pups with successful integration of the first loxp site. The purchase of PF4cre mice from Charles River for importation will allow colony formation of PF4creP2Y1LoxP mice. Update: March 2022: Now confirmed germline transmission in the F1's for P2Y1LoxP. We have performed additional TOPO cloning and sequencing on relevant mice, which demonstrate the correct edit. Of these mice two are males and one female. These mice are homozygous for the 3' loxp site and heterozygous for the 5' loxp site. We have set-up breeding pairs and scheme to generate homozygous floxed mice. The PF4cre line which was previously cryopreserved will now be rederived for this purpose. Update: March 2023: Colony is now in use. 
Type Of Material Technology assay or reagent 
Year Produced 2021 
Provided To Others? No  
Impact Impact is too early to state as the development of the colony is in progress. 
 
Title Identification and synthesis of structurally diverse compounds to probe P2Y1 receptor 
Description As part of work package B, we have selected via computer modelling, an initial 4 novel chemical structures that have been synthesized in-house to probe platelet P2Y1 function. 2 of these compounds showed evidence of 'biased' function in platelet functional assays, comparing platelet motility vs platelet aggregation. The progress of this outcome has been disrupted by COVID-19, as stipulated below: 1. 1 member of staff (Medicinal chemist responsible for compound synthesis) on furlough from 1/4/20 to 31/8/20 2. 1 member of staff (Pharmacologist responsible for functional analysis) on furlough from 18/1/21 due to personal reasons. Anticipated return March 2021 3. Restricted lab access from 1/7/20 to present has meant 50% capacity. 4. Restricted working practices with phlebotomy procedure (to harvest human platelets for functional assays) has also affected progress in 3rd lockdown period (January-March 2021). 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? No  
Impact The results now inform our medicinal chemistry team which molecular structures may induce P2Y1 receptor signalling bias and functional selectivity of platelets in an inflammatory setting compared to a haemostatic setting. The impact is for the planned synthesis of a further 4 structurally diverse compounds that have been identified through an iterative process to test for biased antagonism of platelet function. 
 
Title KMR82-13 series compounds 
Description Work package B: 12 focused analogues of KMR82-13 (a biased P2Y1 antagonist) are currently at different stages of synthesis. The progress of this outcome has been disrupted by COVID-19, as stipulated below: 1. 1 member of staff (Medicinal chemist responsible for compound synthesis) on furlough from 1/4/20 to 31/8/20 2. 1 member of staff (Pharmacologist responsible for functional analysis) on furlough from 18/1/21 due to personal reasons. Anticipated return March 2021 3. Restricted lab access from 1/7/20 to present has meant 50% capacity. 4. Restricted working practices with phlebotomy procedure (to harvest human platelets for functional assays) has also affected progress in 3rd lockdown period (January-March 2021). Update March 2022: The research team have extensively studied the interaction of KMR-82-13 within the P2Y1 binding site using computational techniques and identified residues that appear responsible for biased antagonism compared to other P2Y1 targeting ligands. This information was used to design non-nucleotidic ligands with a urea scaffold that showed superior in silico ADMET properties and interact with the identified amino acid residues within the P2Y1 receptor using BIOVIA discovery studio and ADMETlab 2.0. Six ligands were selected for wet-lab synthesis based on their scoring and the compounds have been successfully synthesised, purified and fully characterised. Initial screening of four compounds identified KSN-159-27 that showed almost complete biased antagonism property which validates our in silico approach in ligand design. A further ten compounds have been designed with KSN-159-27 as the lead chemical scaffold to determine the structure activity relationship and identify suitable candidate compounds for lead-optimisation and pre-clinical evaluation. 
Type Of Material Technology assay or reagent 
Year Produced 2021 
Provided To Others? No  
Impact Impact is too early to assess. 
 
Title KSN-159 series compounds 
Description Work package B: 8 compounds (KSN-159 series) from a prototype KMR82-13 structure have been identified through structural analysis as having likely selective molecular interactions with the P2Y1 receptor. These have been synthesized in a quantity to allow biological analysis. The progress of this outcome has been disrupted by COVID-19, as stipulated below: 1. 1 member of staff (Pharmacologist responsible for functional analysis) on furlough from 18/1/21 due to personal reasons. Anticipated return March 2021 2. Restricted lab access from 1/7/20 to present has meant 50% capacity. 3. Restricted working practices with phlebotomy procedure (to harvest human platelets for functional assays) has also affected progress in 3rd lockdown period (January-March 2021). Update March 2022: 14 compounds (8 from initial synthesis) and a further 6 compounds (KSN-159 series) have been investigated for ability to inhibit either platelet aggregation or migration. One compound, KSN-159-27 revealed almost complete biased antagonist properties for P2Y1-dependent activity in these assays with IC50s established to compare potency at inhibiting platelet function in the two assays. 
Type Of Material Technology assay or reagent 
Year Produced 2022 
Provided To Others? No  
Impact Impact will be assessed during 2021 
 
Title Understanding signalling of non-biased and biased agonists at P2Y1 receptor 
Description Work package A: Data has been obtained with regard to objectives to identify the effects of platelet function by endogenous purines. 5 different molecules were assessed (ADP, ADP-Ribose, NAD, AP4A, and UP4A). Several molecules were shown to have biased activity with regard to platelet function in vitro. The data was presented at the British Pharmacological Society: Pharmacology 2020 conference as a iPoster 14th December 2020: 'Stimulation of the Platelet P2Y1 Receptor by Endogenous Agonists Leads to a Dichotomy in Platelet Function' Update March 2022: GOLD analysis (in silico docking analysis) has been undertaken to develop comparisons between non-biased and biased ligands. Significant differences in amino acid interactions were noted. This data is currently being used to inform other work plans for the project. Data has been obtained to understand the G-protein signalling process by which platelets undergo motility or aggregation via P2Y1. ADP was confirmed to induce RhoA and Rac1 signalling via a P2Y1 and Gaq dependent process. This data provides important understanding as to how platelet non-thrombotic functions may be controlled by P2Y1. Meeting with collaborator Dr Heidi Welch (Babraham Institute, expert in inflammatory cell signalling December 2021) provided confidence that data and assays used were appropriate for conclusions made. Signalling assays to measure canonical PLC signalling have also been developed. These have been problematic, with a low amplitude of response. We have now moved on to measuring DAG as an end product of this signalling pathway, and should provide a basis to compare canonical and biased signalling events for novel antagonists designed with biased properties during 2022. 
Type Of Material Biological samples 
Year Produced 2020 
Provided To Others? Yes  
Impact The data will eventually have impact by informing the medicinal chemists within the award team of other suitable molecular structures that may show functional selectivity in the modulation of platelet P2Y1 receptor activities. 
 
Title WPA: Assessment of other platelet activities 
Description WPA. Update March 2022: Work has progressed to investigate the role of P2Y1 agonists in other platelet functional assays (cell shape change through phalloidin measurement; and additional microscopy analysis). We have investigated the ability of platelets to activate a NLRP3 inflammazone. Due to significant time lost due to COVID-19 restrictions in 2020 and 2021, we have been unable to investigate as many functions as we had planned. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? No  
Impact Impact assessment is dependent on further study. 
 
Title WPC: Assessment of endogenous P2Y1 ligands 
Description A comparison of P2Y1 ligands (endogenous agonists) administered via the intranasal route to illicit direct platelet and inflammatory cell recruitment to the lungs was established in mice. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2022 
Provided To Others? No  
Impact This method provides pilot data needed for further in vivo experiments to be conducted within WPC. The data has contributed to a PhD thesis (Ms Kate Arkless), and will result in a publication. 
 
Description BRET-based G protein assay to measure biased P2Y1 signalling 
Organisation University of Cambridge
Department Department of Pharmacology
Country United Kingdom 
Sector Academic/University 
PI Contribution Provision of endogenous P2Y1 nucleotide agonists, and synthetic antagonists (up to 5) with inhibition of selective functional properties of platelets.
Collaborator Contribution Provision of receptor affinity data for synthetic antagonists, and understanding of G-protein coupling (activation) by endogenous P2Y1 nucleotide agonists using BRET-based Trupath assay.
Impact Data has been used for grant submission to MRC (MR/X019691/1) with Professor Graham Ladds as a Co-I. Data will be used in future publications. Collaboration is multi-disciplinary, with receptor pharmacology and medicinal chemistry expertise.
Start Year 2022
 
Description Engagement with School Children 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Visited schools to discuss the drug discovery process and the contribution of people from different disciplines to the drug discovery process. The main goal of the visit was to encourage school children to consider research in the STEM subjects as a career option.
Year(s) Of Engagement Activity 2022
 
Description Outreach to patient group 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact Outreach Activity held in July 2021. 'Engaging with Respiratory Disorders'. This was organised through Science Gallery London with Ines Leret, a visual artist commissioned for the activity. Three days of interactive workshops exploring lived experiences with respiratory disorders 28th-30th July 2021. 6 researchers from the group participated with patients with respiratory conditions to understand their experiences, to introduce the research of the project, and to reflect and listen to what patients felt was necessary for the future improvements. Some quotes from participants include:

"I have to say I struggle to think of ways to improve. It was professional, friendly, knowledgeable and made me feel that I could ask questions and interact"

"I learned to appreciate (that) respiratory conditions aren't just inflammatory mechanisms to be studied, but are conditions that real people live with
everyday"

"I have learnt about the everyday difficulties of respiratory patients and how the condition can limit their life experiences"

"(I have learnt) lots about the patients' perspective: disruption to everyday life,
the pain, despite treatment, and their hope for future cures"
Year(s) Of Engagement Activity 2021