Analysis of the regulation and function of the mitotic kinase Citron kinase in cell division
Lead Research Organisation:
University of Cambridge
Department Name: Pathology
Abstract
Cells are the building blocks of many organisms, including humans. Growth, development and reproduction in all these organisms depend on the accurate and fascinating process of cell division, which faithfully partitions the genetic information between the two dividing cells. Proper cell division is also crucial for determining cell fate and tissue organization. Errors during this process are responsible for many genetic diseases, including Down's syndrome, microcephaly, sterility, and cancer. Thus, a thorough understanding of the mechanisms that control cell division may lead to the development of novel therapeutic treatments for these genetic diseases. Moreover, recent evidence also indicates a clear link between cell division and ageing and therefore a knowledge of the cell division process can help understand both the natural process of ageing and the origin of early ageing-related diseases.
Complex control and surveillance mechanisms have evolved to ensure the fidelity and robustness of cell division. The genetic material - DNA - is compacted into chromosomes during cell division and is not accessible for the production of new factors. Therefore, the mechanisms that control cell division rely in large part on the regulation of the function and activity of proteins that have been generated before cells begin dividing. One class of proteins that play a key role in controlling the accuracy and fidelity of cell division are the serine/threonine kinases. These kinases can regulate the function, dynamics and activity of numerous other cell division proteins, known as substrates, by adding phosphate groups - a process know as phosphorylation - that alter the mechanical and structural properties of their targets. The goal of this project is to dissect the role of one of this kinase, Citron kinase (CIT-K), which controls different aspects of cell division. We propose to use cutting edge post-genomic technologies to identify all the substrates of CIT-K throughout cell division and to understand how CIT-K is itself regulated through phosphorylation by other kinases. As CIT-K has been linked to human primary microcephaly and proposed as a potential target in anti-cancer therapy, our research will not only help understand key mechanisms that control cell division and proliferation, but will also lay the foundation for the development of future therapies for the treatment of these human pathologies.
Complex control and surveillance mechanisms have evolved to ensure the fidelity and robustness of cell division. The genetic material - DNA - is compacted into chromosomes during cell division and is not accessible for the production of new factors. Therefore, the mechanisms that control cell division rely in large part on the regulation of the function and activity of proteins that have been generated before cells begin dividing. One class of proteins that play a key role in controlling the accuracy and fidelity of cell division are the serine/threonine kinases. These kinases can regulate the function, dynamics and activity of numerous other cell division proteins, known as substrates, by adding phosphate groups - a process know as phosphorylation - that alter the mechanical and structural properties of their targets. The goal of this project is to dissect the role of one of this kinase, Citron kinase (CIT-K), which controls different aspects of cell division. We propose to use cutting edge post-genomic technologies to identify all the substrates of CIT-K throughout cell division and to understand how CIT-K is itself regulated through phosphorylation by other kinases. As CIT-K has been linked to human primary microcephaly and proposed as a potential target in anti-cancer therapy, our research will not only help understand key mechanisms that control cell division and proliferation, but will also lay the foundation for the development of future therapies for the treatment of these human pathologies.
Technical Summary
The fundamental process of cell division requires the coordinated action of many proteins that control complex and yet finely regulated events. As during cell division the DNA is packed into chromosomes, all these events are regulated by post-translational modifications, including phosphorylation and protein degradation. Therefore, cell division represents also a unique and powerful model system to study the function, activity and regulation of kinases and their counteracting phosphatases.
Here we propose to investigate in detail the regulation and function of the mitotic kinases Citron kinase (CIT-K), which has been neglected and misunderstood for many years and only recently shown to function throughout mitosis and linked to human disease. We plan to use a combination of chemical genetics and quantitative phospho-proteomics to identify the substrates of CIT-K and study the role of its kinase activity at different stages of mitosis. We will also study the regulation of CIT-K by two other mitotic kinases, Aurora B and Cdk1, by mutating the CIT-K residues phosphorylated by these two kinases into phospho-mimetic and phospho-dead amino acids. These mutants will then be employed in a series of in vivo and in vitro assays to elucidate the role of these phosphorylations events on the function, dynamics and activity of CIT-K during cell division, including its interaction with other mitotic proteins and cellular components. Finally, we will create bioinformatics tools that will allow comparative and integrated analysis of the protein-protein interaction networks of CIT-K and other mitotic proteins in different conditions, with the ultimate goal of providing the scientific community with a useful and versatile bioinformatics platform for the mining and analysis of phosphorylation-mediated regulation of protein-protein interaction networks in cell division.
Here we propose to investigate in detail the regulation and function of the mitotic kinases Citron kinase (CIT-K), which has been neglected and misunderstood for many years and only recently shown to function throughout mitosis and linked to human disease. We plan to use a combination of chemical genetics and quantitative phospho-proteomics to identify the substrates of CIT-K and study the role of its kinase activity at different stages of mitosis. We will also study the regulation of CIT-K by two other mitotic kinases, Aurora B and Cdk1, by mutating the CIT-K residues phosphorylated by these two kinases into phospho-mimetic and phospho-dead amino acids. These mutants will then be employed in a series of in vivo and in vitro assays to elucidate the role of these phosphorylations events on the function, dynamics and activity of CIT-K during cell division, including its interaction with other mitotic proteins and cellular components. Finally, we will create bioinformatics tools that will allow comparative and integrated analysis of the protein-protein interaction networks of CIT-K and other mitotic proteins in different conditions, with the ultimate goal of providing the scientific community with a useful and versatile bioinformatics platform for the mining and analysis of phosphorylation-mediated regulation of protein-protein interaction networks in cell division.
Planned Impact
Our research will benefit three sectors:
1) Academic community:
The research proposed in this application will improve our knowledge of the mechanisms that control cytokinesis and contribute to the scientific advancement in the fields of cell division and cancer and benefit the academic community worldwide. We will disseminate our findings to the scientific community by attending national and international scientific conferences and present our research in form of poster or oral communications. We will publish our results in the form of research articles or reviews in peer-reviewed scientific journal and make our publications widely accessible by publishing in open access journals or by depositing our articles in PubMed Central. We will also generate several reagents and data that will be useful to the academic community, including cDNAs and constructs, antibodies, and transgenic and gene-edited human cell lines. In addition, the proteomic data will be entered in a database that allows systematic comparison and analysis of MS data and correlation with other datasets. This database will be very valuable for the academic community. Moreover, during the duration of the grant we will train 1 postdoctoral research associate, 1 graduate student and at least 3 undergraduate students. The postdoc will be directly employed from this grant, while the PI has been promised a Departmental PhD studentship for this project.
2) Business/Industry:
Mutations in Citron kinase (CIT-K) have been implicated in human primary microcephaly and CIT-K has been proposed as anti-cancer target. Thus, the research proposed here could lead to the identification of new reagents and to new knowledge that could aid in the diagnosis of human primary microcephaly and the treatment of cancer pathologies. For example some of our phospho-specific antibodies might become useful biomarkers. Moreover, the antibodies and cell lines generated during this project could also have commercial value. To exploit, patent and license any possible commercial applications of our research, we will consult with Cambridge Enterprise Ltd, a wholly owned subsidiary of the University of Cambridge responsible for the commercialisation of technology arising from the University's research. Cambridge Enterprises has established a programme of scientific open collaboration with GlaxoSmithKline. In addition the PI is a member of the Cambridge Cancer centre, which organises annual meetings with AstraZeneca to discuss cancer research in Cambridge and its potential therapeutic and commercial exploitations.
3) General public:
Our findings could lead to potential novel therapeutic treatments for human pathologies, such as cancer and microcephaly. We could for example identify new biomarkers that could aid in the identification and prognosis of these pathologies and this would have a major impact for the health and well being of people worldwide.
Our research will also provide novel insights into the mechanisms that control cell division. Cell division is a basic process essential for normal growth, development, reproduction, and aging in humans and thus our results will directly benefit the culture of the public in the UK.
To communicate our research and engage with the public, we will participate to some of the activities organised by the Office of External Affairs and Communications (OEAC) of the University of Cambridge, including:
-The University of Cambridge Science Festival organised every year by the OEAC;
-School Roadshow organised by the OAEC in parallel with the Science festival;
-Public lectures organised by the Department of Pathology charity CAMPOD;
-Communication with mass media in synergy with the Communications Team of the OEAC, which handles publicity and media enquiries on behalf of the University of Cambridge.
1) Academic community:
The research proposed in this application will improve our knowledge of the mechanisms that control cytokinesis and contribute to the scientific advancement in the fields of cell division and cancer and benefit the academic community worldwide. We will disseminate our findings to the scientific community by attending national and international scientific conferences and present our research in form of poster or oral communications. We will publish our results in the form of research articles or reviews in peer-reviewed scientific journal and make our publications widely accessible by publishing in open access journals or by depositing our articles in PubMed Central. We will also generate several reagents and data that will be useful to the academic community, including cDNAs and constructs, antibodies, and transgenic and gene-edited human cell lines. In addition, the proteomic data will be entered in a database that allows systematic comparison and analysis of MS data and correlation with other datasets. This database will be very valuable for the academic community. Moreover, during the duration of the grant we will train 1 postdoctoral research associate, 1 graduate student and at least 3 undergraduate students. The postdoc will be directly employed from this grant, while the PI has been promised a Departmental PhD studentship for this project.
2) Business/Industry:
Mutations in Citron kinase (CIT-K) have been implicated in human primary microcephaly and CIT-K has been proposed as anti-cancer target. Thus, the research proposed here could lead to the identification of new reagents and to new knowledge that could aid in the diagnosis of human primary microcephaly and the treatment of cancer pathologies. For example some of our phospho-specific antibodies might become useful biomarkers. Moreover, the antibodies and cell lines generated during this project could also have commercial value. To exploit, patent and license any possible commercial applications of our research, we will consult with Cambridge Enterprise Ltd, a wholly owned subsidiary of the University of Cambridge responsible for the commercialisation of technology arising from the University's research. Cambridge Enterprises has established a programme of scientific open collaboration with GlaxoSmithKline. In addition the PI is a member of the Cambridge Cancer centre, which organises annual meetings with AstraZeneca to discuss cancer research in Cambridge and its potential therapeutic and commercial exploitations.
3) General public:
Our findings could lead to potential novel therapeutic treatments for human pathologies, such as cancer and microcephaly. We could for example identify new biomarkers that could aid in the identification and prognosis of these pathologies and this would have a major impact for the health and well being of people worldwide.
Our research will also provide novel insights into the mechanisms that control cell division. Cell division is a basic process essential for normal growth, development, reproduction, and aging in humans and thus our results will directly benefit the culture of the public in the UK.
To communicate our research and engage with the public, we will participate to some of the activities organised by the Office of External Affairs and Communications (OEAC) of the University of Cambridge, including:
-The University of Cambridge Science Festival organised every year by the OEAC;
-School Roadshow organised by the OAEC in parallel with the Science festival;
-Public lectures organised by the Department of Pathology charity CAMPOD;
-Communication with mass media in synergy with the Communications Team of the OEAC, which handles publicity and media enquiries on behalf of the University of Cambridge.
Publications
Capalbo L
(2019)
Purification of Recombinant ESCRT-III Proteins and Their Use in Atomic Force Microscopy and In Vitro Binding and Phosphorylation Assays.
in Methods in molecular biology (Clifton, N.J.)
Capalbo L
(2019)
The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis.
in Nature communications
D'Avino PP
(2023)
Editorial: Mechanics and regulation of mitotic exit and cytokinesis.
in Frontiers in cell and developmental biology
Halcrow E
(2022)
Midbody Proteins Display Distinct Dynamics during Cytokinesis.
Halcrow E
(2022)
Midbody Proteins Display Distinct Dynamics during Cytokinesis.
Halcrow E
(2022)
Midbody Proteins Display Distinct Dynamics during Cytokinesis
in Cells
Description | We have significantly improved our knowledge of the regulation of cell division in normal and cancer cells. We have discovered how a class of proteins, the kinases, regulate some aspects of cell division. We have also discovery one novel mechanisms of how cancer cells change their genome to increase cancer heterogeneity, which will have implication for the classification and treatment of oesophageal adenocarcinoma and possibly other highly heterogeneous cancers. We have developed methods to identify and characterise the interaction networks of proteins during cell division. Finally, we has established two new collaborations that have already produced significant outcomes. |
Exploitation Route | Our results on the protein-protein interaction networks during cell division provide a molecular blueprint of the intricate connections amongst components of a very important cellular organelle -the midbody- which will be pivotal in dissecting its multiple functions in cell proliferation, cell fate, cell polarity and cancer. Our findings that the likely origin of polyploidy in oesophageal adenocarcinoma is mitotic failure caused by problems in chromosomal attachments not only improves our understanding of cancer evolution and diversification, but may also aid in the classification and treatment of oesophageal adenocarcinoma and possibly other highly heterogeneous cancers. |
Sectors | Healthcare Pharmaceuticals and Medical Biotechnology |
Title | Synchronization of human retinal pigment epithelial-1 cells in mitosis |
Description | We reported a novel methodology to synchronize RPE-1 cells based on sequential treatments with the Cdk4 and Cdk6 inhibitor PD 0332991 (palbociclib) and the microtubule-depolymerizing drug nocodazole. With this method, the vast majority (80-90%) of RPE-1 cells arrested at prometaphase and exited mitosis synchronously after release from nocodazole. This synchronization method significantly expands the versatility and applicability of RPE-1 cells to the study of cell division and might be applied to other cell lines that do not respond to treatments with DNA synthesis inhibitors. |
Type Of Material | Technology assay or reagent |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | We showed that this protocol could be successfully employed for large-scale purification of cells and proteomic studies. |
Title | Midbody proteome and interactome datasets |
Description | We report the characterization of the proteome and interactome of a cellular organelle, the midbody, required for the final separation of the two daughter cells and for other post-mitotic cellular events, including cell fate, pluripotency, apical-basal polarity, tissue organization, and cilium and lumen formation. This valuable resource provides a molecular blueprint of the intricate connections amongst midbody components that will be pivotal in dissecting the multiple functions of this organelle |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Our analysis of the midbody interactome revealed a plethora of previously unidentified interactions and highlighted a role of the PP1beta-MYPT1 phosphatase in regulating the dynamics of central spindle microtubules by antagonizing Aurora B phosphorylation of the centralspindlin component MKLP1 in late cytokinesis. The mining of these datasets led us to open new areas of research and these datasets have also been a useful resource for many other research groups worldwide, as indicated by its numerous citations (64 to date) |
Description | Origin of polyploidy in oesophageal adenocarcinoma |
Organisation | University of Cambridge |
Department | MRC Cancer Unit |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We had expertise in cell division, which was crucial for the project, and provided training for a PhD student. |
Collaborator Contribution | The collaborators had expertise in oesophageal adenocarcinoma and provided materials as well genomics and transcriptome data. |
Impact | doi: 10.1038/s41418-021-00745-8 |
Start Year | 2017 |
Description | Phosphorylation by Aurora B kinase regulates caspase-2 activity and function |
Organisation | University of South Australia |
Country | Australia |
Sector | Academic/University |
PI Contribution | We provide expertise and carried out experiments for the identification of the kinase responsible for phosphorylating caspase 2 by screening for various kinases using an in vitro assay. |
Collaborator Contribution | The collaborators have expert knowledge of the role of caspase-2 and where already studying its regulation. |
Impact | doi: 10.1038/s41418-020-00604-y |
Start Year | 2020 |