High-resolution imaging with full-waveform inversion in medicine, wind energy and carbon capture and storage
Lead Research Organisation:
Imperial College London
Department Name: Earth Science and Engineering
Abstract
Imaging methods are used to obtain visual representations of objects that are otherwise invisible to the naked eye. The physical principles in which imaging methods are based are common across disciplines and, hence, can be adapted. Here I propose to lead an inter-disciplinary project that will focus on obtaining images of medical and geophysical targets that are traditionally difficult to image with ultrasound or seismic waves, such as the brain.
Rapid brain imaging is central to the diagnosis and treatment of stroke and other acute neurological conditions, but existing methods for imaging the brain (mainly X-rays and magnetic resonance imaging) require large, immobile, high-power instruments that are near-impossible to deploy outside specialised environments. I will create a device that can be applied to any patient, at any time and in any place by exploiting advances that have already revolutionised imaging in geophysics and using ultrasound waves transmitted across the head. In particular, I will adapt an imaging algorithm known as full-waveform inversion to transform the recorded ultrasound data into the first highly detailed image of an adult brain with ultrasound, and with a much higher resolution than those obtained with conventional ultrasound. To achieve this goal, I will design a safe and suitable device for its application to healthy volunteers, and I will use the recorded data and full-waveform inversion conveniently adapted. This will require solving several technical aspects, such as accounting for involuntary movement due to breathing, obtaining the characteristics of the skull from the data and accelerating the computations on graphics processing units. The success of this project would represent a major breakthrough in brain imaging and would be particularly relevant to improve the survival rate and wellbeing of patients with acute stroke, which is the second-largest cause of death and acquired adult disability.
Then, I will study the capability of ultrasound full-waveform inversion for breast cancer detection, in particular for patients with dense breasts in which traditional mammography fails, and for bone imaging - in particular for detecting osteoporosis and fractures. To achieve these goals, I will develop and validate in the laboratory new full-waveform inversion algorithms to recover multiple characteristics of biological tissues and I will use low-frequency ultrasound that easily penetrates bone.
Next, I will investigate the potential of full-waveform inversion of ultrahigh-frequency seismic data, a particular type of seismic waves that travel small distances but can interact with small objects, in order to characterise the first 100 meters of the subsurface in offshore wind farms. This new approach will be particularly useful to characterise vast areas of the subsurface and locate adequate regions for the installation of wind turbines to reduce maintenance costs.
Finally, I will evaluate different strategies to obtain subsurface images over time with full-waveform inversion of seismic data at carbon dioxide storage sites, which play a crucial role in reducing the carbon footprint. This will help engineers better understand how carbon dioxide reservoirs evolve and how to make them safer and more efficient.
Rapid brain imaging is central to the diagnosis and treatment of stroke and other acute neurological conditions, but existing methods for imaging the brain (mainly X-rays and magnetic resonance imaging) require large, immobile, high-power instruments that are near-impossible to deploy outside specialised environments. I will create a device that can be applied to any patient, at any time and in any place by exploiting advances that have already revolutionised imaging in geophysics and using ultrasound waves transmitted across the head. In particular, I will adapt an imaging algorithm known as full-waveform inversion to transform the recorded ultrasound data into the first highly detailed image of an adult brain with ultrasound, and with a much higher resolution than those obtained with conventional ultrasound. To achieve this goal, I will design a safe and suitable device for its application to healthy volunteers, and I will use the recorded data and full-waveform inversion conveniently adapted. This will require solving several technical aspects, such as accounting for involuntary movement due to breathing, obtaining the characteristics of the skull from the data and accelerating the computations on graphics processing units. The success of this project would represent a major breakthrough in brain imaging and would be particularly relevant to improve the survival rate and wellbeing of patients with acute stroke, which is the second-largest cause of death and acquired adult disability.
Then, I will study the capability of ultrasound full-waveform inversion for breast cancer detection, in particular for patients with dense breasts in which traditional mammography fails, and for bone imaging - in particular for detecting osteoporosis and fractures. To achieve these goals, I will develop and validate in the laboratory new full-waveform inversion algorithms to recover multiple characteristics of biological tissues and I will use low-frequency ultrasound that easily penetrates bone.
Next, I will investigate the potential of full-waveform inversion of ultrahigh-frequency seismic data, a particular type of seismic waves that travel small distances but can interact with small objects, in order to characterise the first 100 meters of the subsurface in offshore wind farms. This new approach will be particularly useful to characterise vast areas of the subsurface and locate adequate regions for the installation of wind turbines to reduce maintenance costs.
Finally, I will evaluate different strategies to obtain subsurface images over time with full-waveform inversion of seismic data at carbon dioxide storage sites, which play a crucial role in reducing the carbon footprint. This will help engineers better understand how carbon dioxide reservoirs evolve and how to make them safer and more efficient.
Publications
Cueto C
(2023)
Corrigendum to Stride: A flexible software platform for high-performance ultrasound computed tomography Computer Methods and Programs in Biomedicine 221 (2022) 106855.
in Computer methods and programs in biomedicine
Cueto C
(2022)
Stride: A flexible software platform for high-performance ultrasound computed tomography
in Computer Methods and Programs in Biomedicine
Robins T
(2023)
Dual-Probe Transcranial Full-Waveform Inversion: A Brain Phantom Feasibility Study
in Ultrasound in Medicine & Biology
Description | The use of a newly build ultrasound helmet scanning prototype on head-mimicking phantoms, formalin-fixed human skulls and a volunteer subject has demonstrated that low-frequency ultrasound signal travels through the human adult head safely and with a signal strength that can potentially be used for imaging, contrarily to what was previously thought. This is a key finding, and demonstrates that ultrasound can potentially be used to image the whole brain if low-frequency transmitted and reflected ultrasound rather than high-frequency reflected-only ultrasound are used, but this requires the use of sophisticated image reconstruction algorithms that can obtain images from these data. This also opens the question on how to improve the efficiency, scalability and robustness of such algorithms - which will be mostly addressed by the software currently under development -, and also what configurations / improvements can be made on the acquisition device to make the transition to a clinical prototype a success. Another key finding, linked to this funding and the additional Pathfinder / Innovate UK grant, is that uncertainty estimation during breast ultrasound tomography image reconstruction is feasible and can provide useful information on the reconstructed image, and that ultrasound are not significantly attenuated through soft tissues such as the breast, but attenuation and density tissue properties can potentially be retrieved from the data. This opens the question on what is the best strategy to recover these properties with sufficient accuracy and resolution from the data, and whether they provide useful information to classify different tissue types and improve breast cancer detection and diagnosis. |
Exploitation Route | First, these findings will (and already have) propelled other scientists worldwide to investigate new imaging algorithms and acquisition devices that can outperform / complement the proposed method / prototype. Second, the NHS or other healthcare providers may want to be early adopters of the technology and take this forward. A potential way forward to roll this out on the NHS and elsewhere is through commercialisation via the co-founded start-ups, which could undoubtedly accelerate the transition to the clinics and strengthen the societal and economic impact obtained from these research outcomes. |
Sectors | Healthcare |
Description | Focused discussion on new R&D agency ARIA - interfacing with the brain |
Geographic Reach | National |
Policy Influence Type | Participation in a guidance/advisory committee |
Description | Dame Julia Higgins Postdoc Collaborative Research Fund |
Amount | £2,844 (GBP) |
Organisation | Imperial College London |
Sector | Academic/University |
Country | United Kingdom |
Start | 08/2023 |
End | 07/2024 |
Description | Imaging the brain with ultrasound full-waveform inversion |
Amount | £3,481,824 (GBP) |
Funding ID | EP/X033651/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 04/2023 |
End | 06/2027 |
Description | Quantitative Ultrasound Stochastic Tomography - Revolutionizing breast cancer diagnosis and screening with supercomputing-based radiation-free imaging. |
Amount | £2,441,257 (GBP) |
Funding ID | 101046475 |
Organisation | European Commission |
Sector | Public |
Country | European Union (EU) |
Start | 03/2022 |
End | 03/2024 |
Description | Quantitative Ultrasound Tomography (QUSTom) consortium |
Organisation | Arctur |
Country | Slovenia |
Sector | Private |
PI Contribution | Expertise on ultrasound image reconstruction with full-waveform inversion, data analysis and algorithms for the estimation of uncertainty quantification during image reconstruction. |
Collaborator Contribution | Due to the variety of partners, their contributions have been varied. From optimisation of computationally-intensive software to high-performance computing, acquisition of ultrasound data for validation in vitro and in vivo, access to volunteers, calibration of ultrasound sensors to training of staff on intelectual property and breast cancer imaging, amongst others. |
Impact | Multi-disciplinary collaboration with software engineers, physicists, ultrasound engineers, electronic engineers, radiologists and specialists in regulatory for medical devices. The main output is the optimisation of software performance and the addition of more physics into the image reconstruction, but work is still in progress and no publication has been made so far. The collaboration has also resulted in being awarded supercomputing hours in the Spanish National Supercomputer (RES). |
Start Year | 2021 |
Description | Quantitative Ultrasound Tomography (QUSTom) consortium |
Organisation | Barcelona Supercomputing Center |
Country | Spain |
Sector | Public |
PI Contribution | Expertise on ultrasound image reconstruction with full-waveform inversion, data analysis and algorithms for the estimation of uncertainty quantification during image reconstruction. |
Collaborator Contribution | Due to the variety of partners, their contributions have been varied. From optimisation of computationally-intensive software to high-performance computing, acquisition of ultrasound data for validation in vitro and in vivo, access to volunteers, calibration of ultrasound sensors to training of staff on intelectual property and breast cancer imaging, amongst others. |
Impact | Multi-disciplinary collaboration with software engineers, physicists, ultrasound engineers, electronic engineers, radiologists and specialists in regulatory for medical devices. The main output is the optimisation of software performance and the addition of more physics into the image reconstruction, but work is still in progress and no publication has been made so far. The collaboration has also resulted in being awarded supercomputing hours in the Spanish National Supercomputer (RES). |
Start Year | 2021 |
Description | Quantitative Ultrasound Tomography (QUSTom) consortium |
Organisation | Karlsruhe Institute of Technology |
Country | Germany |
Sector | Academic/University |
PI Contribution | Expertise on ultrasound image reconstruction with full-waveform inversion, data analysis and algorithms for the estimation of uncertainty quantification during image reconstruction. |
Collaborator Contribution | Due to the variety of partners, their contributions have been varied. From optimisation of computationally-intensive software to high-performance computing, acquisition of ultrasound data for validation in vitro and in vivo, access to volunteers, calibration of ultrasound sensors to training of staff on intelectual property and breast cancer imaging, amongst others. |
Impact | Multi-disciplinary collaboration with software engineers, physicists, ultrasound engineers, electronic engineers, radiologists and specialists in regulatory for medical devices. The main output is the optimisation of software performance and the addition of more physics into the image reconstruction, but work is still in progress and no publication has been made so far. The collaboration has also resulted in being awarded supercomputing hours in the Spanish National Supercomputer (RES). |
Start Year | 2021 |
Description | Quantitative Ultrasound Tomography (QUSTom) consortium |
Organisation | Vall d' Hebron Research Institute |
Country | Spain |
Sector | Academic/University |
PI Contribution | Expertise on ultrasound image reconstruction with full-waveform inversion, data analysis and algorithms for the estimation of uncertainty quantification during image reconstruction. |
Collaborator Contribution | Due to the variety of partners, their contributions have been varied. From optimisation of computationally-intensive software to high-performance computing, acquisition of ultrasound data for validation in vitro and in vivo, access to volunteers, calibration of ultrasound sensors to training of staff on intelectual property and breast cancer imaging, amongst others. |
Impact | Multi-disciplinary collaboration with software engineers, physicists, ultrasound engineers, electronic engineers, radiologists and specialists in regulatory for medical devices. The main output is the optimisation of software performance and the addition of more physics into the image reconstruction, but work is still in progress and no publication has been made so far. The collaboration has also resulted in being awarded supercomputing hours in the Spanish National Supercomputer (RES). |
Start Year | 2021 |
Title | Ultrasound neuro-imaging medical device |
Description | The medical product under development is an ultrasound brain imaging device with over 1,500 sensors that emit and record ultrasound signals at low frequency. Currently it is in the proof-of-concept phase. The main source of funding is this current award, a listed EPSRC award and an other award from a collaborator listed in the proposal. |
Type | Diagnostic Tool - Imaging |
Current Stage Of Development | Initial development |
Year Development Stage Completed | 2022 |
Development Status | Under active development/distribution |
Impact | Not applicable. |
Title | Stride: Accelerating Ultrasound Research |
Description | An open-source library for ultrasound modelling and tomography that provides flexibility and scalability together with production-grade performance. |
Type Of Technology | Software |
Year Produced | 2021 |
Impact | This software platform has had some traction among the community of ultrasound researchers, who want to implement new algorithms / ideas into software codes that are scalable and can be used in a high-performance computer. |
URL | https://www.stride.codes/ |
Title | Ultrasound brain imaging device |
Description | Design, development and construction of a high-resolution and universal brain imaging device that uses ultrasound alone to obtain images for everyone. |
Type Of Technology | New/Improved Technique/Technology |
Year Produced | 2022 |
Impact | New technology is being developed which, if successful, will allow to obtain sub-millimetre images of the brain with a device that is safe, portable, universal, affordable and can acquire data rapidly. This has already generated traction among scientists and others have started to investigate on this area. |
Description | Applying for a Research Fellowship |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Other audiences |
Results and Impact | Workshop event with PDRAs and Fellows at the Earth Science and Engineering Department at Imperial College to encourage fellow PDRAs to apply for an ICRF and UKRI FLF Fellowships and to explain how to write a successful Fellowship application. |
Year(s) Of Engagement Activity | 2022 |
Description | Departmental workshop on costing for research funding applications |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Postgraduate students |
Results and Impact | Workshop on how to prepare budgets for different funding bodies and applications, essentially directed to postgraduate students and ECRs willing to apply for funding and establish themselves as group leaders. |
Year(s) Of Engagement Activity | 2024 |
Description | Discussions with ARIA Programme Directors |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Supporters |
Results and Impact | Focused discussion with two programme directors of the new R&D agency ARIA to influence/shape the directors' thesis. Meeting at the ARIA headquarters. |
Year(s) Of Engagement Activity | 2024 |
Description | Engagement with civil servants from DSIT |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Visit from 20 civil servants and policy makers from the DSIT to my research lab in the framework of the UK - European Pathfinder project. Sparked discussion on policy making, future direction and future funding from UK - European sources. Continued discussions after engagement. |
Year(s) Of Engagement Activity | 2024 |
Description | From Seismology to Medical Imaging |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Postgraduate students |
Results and Impact | MSc and MSci students attended the workshop on multi-disciplinary science (MultiSci MRC DTP) where we discussed how to establish multi-disciplinary collaboration and carry out multi-disciplinary projects that have a positive impact on society, which sparked questions and discussion afterwards on how to move across disciplines and how to engage with researchers/industry from other backgrounds. |
Year(s) Of Engagement Activity | 2022 |
Description | Great Exhibition Road Festival 2023 |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Re-designed previous interactive installation using Schlieren photography to explain principles of medical imaging. Lead by Dr Carlos Cueto (team member) In collaboration with Dr Melanie King (Canterbury Christ Church University). Attended by 75-100 participants of all ages. |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.imperial.ac.uk/events/160698/great-exhibition-road-festival-2023/ |
Description | Imperial Layes: Play (Art exhibition) - Photographing the invisible |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Using Schlieren photography, we created an interactive experience in which participants could obverse physical phenomena like sound and heat. We used this platform to explain our research on ultrasound-based brain imaging and explore participants' prior knowledge about medical ultrasound and opinions about this research's implications. Carried out in collaboration with artist Melanie King from Canterbury Christ. |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.imperial.ac.uk/events/158469/imperial-lates-play/ |
Description | Workshop at CRUK Convergence Science Centre |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Online workshop on wave-based ultrasound imaging of the breast for engineers, scientists, practitioners and radiologists - but open to anyone working on cancer - to bring different disciplines together. As a result, I have stablished a new collaboration with Dr Sung Pil and Dr Joshua Shur on stomach cancer, for which we are now applying for further funding (under review). |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.convergencesciencecentre.ac.uk/policy-and-engagement/research-engagement/converging-on-c... |
Description | Workshop for ICRF fellows at Imperial College London |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Other audiences |
Results and Impact | 20 newly awarded Imperial College Research Fellows attended the workshop on how to manage research projects as a PI and have an impact, which sparked interesting discussions on career progression within and outside academia. |
Year(s) Of Engagement Activity | 2022 |