📣 Help Shape the Future of UKRI's Gateway to Research (GtR)

We're improving UKRI's Gateway to Research and are seeking your input! If you would be interested in being interviewed about the improvements we're making and to have your say about how we can make GtR more user-friendly, impactful, and effective for the Research and Innovation community, please email gateway@ukri.org.

Targeting Kir4.1 To Control Brain Excitability And Seizures

Lead Research Organisation: UNIVERSITY COLLEGE LONDON
Department Name: Institute of Neurology

Abstract

Neuronal activity can rapidly elevate extracellular potassium in the brain. Potassium elevations are mechanistically related to increases in nerve cell excitability, potentially leading to abnormal network behaviours such as in epilepsy. Astroglia are essential for maintaining potassium balance, through a buffering mechanism engaging their sodium-potassium pumps. However, new evidence attributes the dynamic regulation of extracellular potassium mainly to astroglial channels of the Kir4.1 type whereas downregulation of these channels has been associated with enhanced seizure susceptibility and, in the long term, sclerotic abnormalities of brain tissue.

Despite the importance of Kir4.1 for brain excitability control, the causal relationships between Kir4.1 expression, potassium dynamics, local neuronal excitability and synaptic function remain poorly understood. The lack of progress stems from the poorly understood and often counteracting consequences of extracellular potassium rises, from the lack of tools to monitor potassium dynamics in brain tissue, and from the poor access to the sponge-like, nanoscopic morphology of astroglia.

The main goal of the present proposal is therefore to understand how the Kir4.1-dependent potassium buffering by astrocytes regulates neural excitability and synaptic circuit function, and whether targeting these mechanisms, pharmacologically or genetically, can alter susceptibility to runaway excitation and seizures. Thus, the central hypothesis is that the varied expression of astroglial Kir4.1 regulates, in a mechanistically predictable manner, cell excitability and synaptic signal transfer. The key translational aspect of the proposal is that the controlled manipulation of Kir4.1 expression should ameliorate pathological changes in neural excitability, such as those during epilepsy or cortical spreading depression.

To achieve our goal, we will take advantage of our novel and cutting-edge experimental and theoretical approaches. We have established gene-targeting protocols to enable single-cell studies in Kir4.1-overexpressing astrocytes while simultaneously monitoring neurotransmitter release at local synaptic connections. We have embarked on a novel nanoengineering technology to monitor potassium, which involves encapsulation of the ratiometric optical sensor into ion-permeable, biologically compatible microcapsules. We have established a novel biophysical modelling platform that enables theoretical probing of the intra- and extracellular potassium dynamics in realistic astrocyte models. We have developed a novel multi-electrode electrocorticography technique based on flexible graphene transistor arrays enabling full-band current recordings in awake animals.

These and related methodological breakthroughs, backed by a large body of pilot and proof-of-principle data, helped us to formulate a feasible research strategy for achieving our main goal. The plan includes five specific objectives addressed in five work packages. The results will provide new knowledge about the mechanisms by which astroglia regulate neuronal excitability through the Kir4.1-dependent control of extracellular potassium dynamics. Based on such knowledge, a therapeutic strategy could be developed that helps reduce brain susceptibility to runaway excitation, such as seen in epilepsy and related disorders.

Technical Summary

Neural activity elevates extracellular K+ and thus boosts cell excitability, potentially leading to runaway excitation, such as epileptiform activity. Astrocytes dynamically control K+, mainly by engaging Kir4.1 channels, and Kir4.1 downregulation has been related to seizure susceptibility. However, the causal relationships between the Kir4.1 expression patterns, the external K+ dynamics, local neuronal excitability and synaptic function remain poorly understood. This knowledge gap hampers our search for feasible routes of therapeutic intervention.

We aim therefore to understand how the Kir4.1-dependent K+ buffering regulates network excitability and synaptic circuit function in the brain, and whether targeting Kir4.1 function, pharmacologically or genetically, can alter susceptibility to overexcitation and seizures. Our research strategy involves five specific objectives, taking advantage of the newly established techniques in acute slices and in vivo, including: gene-targeting protocols enabling visualisation of Kir4.1-overexpressing astrocytes while monitoring glutamate release at local synapses; a nano-technology to monitor extracellular K+ landscapes in situ using a microencapsulated ratiometric FRET dye; a computational platform ASTRO for theoretical probing of K+ dynamics in realistic astrocyte models; and a novel multi-electrode electrocorticography technique based on flexible graphene transistor arrays enabling full-band current recordings in awake animals.

These and related breakthroughs, backed by a large body of pilot results and proof-of-principle tests, helped formulate a feasible strategy to achieve our goal. The outcome will provide new knowledge about the mechanisms by which astroglia regulate neuronal excitability through the Kir4.1-dependent control of K+ dynamics. Based on such knowledge, a therapeutic strategy could be developed to help reduce brain susceptibility to runaway excitation, such as in epilepsy and related disorders
 
Description EURAMET Health (HTL) Panel
Geographic Reach Europe 
Policy Influence Type Participation in a guidance/advisory committee
Impact The panel provides reviews, evaluations, and guidance pertaining to the implementation of novel biomedical tools and techniques.
URL https://www.euramet.org/about-euramet
 
Description Dynamic mapping of micro-viscosity in the intact brain
Amount £652,889 (GBP)
Funding ID BB/Y009959/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 08/2024 
End 03/2028
 
Description Inhibitory brain dynamics for adaptive behaviour
Amount £4,055,445 (GBP)
Funding ID 223131/Z/21/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2022 
End 01/2027
 
Description Memory trace formation at and beyond individual synapses in the intact brain
Amount £711,567 (GBP)
Funding ID BB/Y003926/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 05/2024 
End 05/2028
 
Description Principles of synapse-astrocyte networking in the brain
Amount £2,737,900 (GBP)
Funding ID 212251/Z/18/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2018 
End 10/2023
 
Title 2PE imaging protocols in the intact brain 
Description 2PE imaging protocols in the intact brain, under a sensory stimulation paradigm 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? No  
Impact New lines of research and several new publications that have used this method 
 
Title Computer simulation platforms ASTRO, BRAINCELL and ARACHNE 
Description Computer simulation platforms ASTRO, BRAINCELL and ARACHNE for realistic simulations of individual brain cells and their networks 
Type Of Material Technology assay or reagent 
Year Produced 2021 
Provided To Others? Yes  
Impact The 3Rs implication (Refinement and Replacement), multiple users reported. 
 
Title Excitatory synapses and overexpression of astroglial K+ channel 
Description Presynaptic functin monitoring under the overexpression of astroglial K+ channel Kir4.1 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2022 
Provided To Others? Yes  
Impact Overexpression of Kir4.1 may regulate ise-dependen plasticity of local glutamatergic synapses 
 
Title Monitoring extracellular K+ with GINKO 
Description Monitoring extracellular K+ with the optical sensor GINKO2 
Type Of Material Technology assay or reagent 
Year Produced 2025 
Provided To Others? Yes  
Impact PMID: 39951378 
 
Title Spot-optogenetics usinf opsin CHROME 
Description Developing spot-optogenetics using the opsin CHROME 
Type Of Material Technology assay or reagent 
Year Produced 2024 
Provided To Others? No  
Impact A new methods of testing synaptic signal integration in situ 
 
Title Two-photon excitation probing of new sensors 
Description Two-photon excitation probing of new sensors 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2020 
Provided To Others? Yes  
Impact A new method to detect a previously undetectable receptors in live cells in organised brain tissue 
 
Title A computer model of stochastic neuropil 
Description A computer model of molecular diffusion, uptake, and receptor activation in stochastic neuropil 
Type Of Material Computer model/algorithm 
Year Produced 2024 
Provided To Others? Yes  
Impact Most realistic to date modelling of molecular diffusion, uptake, and receptor activation in stochastic neuropil 
URL https://github.com/RusakovLab/NatureComm
 
Title BRAINCELL (in development) 
Description A computational platform for detailed biophysical modelling of brain cells including neurons and glia. 
Type Of Material Computer model/algorithm 
Year Produced 2023 
Provided To Others? Yes  
Impact >50 citations of the original ASTRO prototype 
URL https://github.com/LeonidSavtchenko/BrainCellNew
 
Title Neuroalgebra.net website hosting novel modelling tools 
Description A Neuroalgebra.net website hosting modelling platforms ASTRO, BRAINCELL, and ARACHNE 
Type Of Material Computer model/algorithm 
Year Produced 2024 
Provided To Others? Yes  
Impact Freely available modeling platforms 
URL http://www.neuroalgebra.net
 
Description 2PE imaging and patch clamp in the intact brain 
Organisation Janelia Research Campus
Country United States 
Sector Public 
PI Contribution 2PE imaging in vivo
Collaborator Contribution 2PE imaging and patch-clamp in the intact brain
Impact Publications
Start Year 2020
 
Description 2PE imaging and patch clamp in the intact brain 
Organisation University of Bonn
Country Germany 
Sector Academic/University 
PI Contribution 2PE imaging in vivo
Collaborator Contribution 2PE imaging and patch-clamp in the intact brain
Impact Publications
Start Year 2020
 
Description Fluorescence anisotropy imaging 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution We design and run experiments in acute brain slices
Collaborator Contribution Development of a novel method of diffusion measurement on a nano-scale
Impact To date, the outcome of the aforementioned collaboration could be summarised as follows: 1. A brand new methodology of fluorescence anisotropy imaging, which enables nano-scale diffusion and miscro-viscosity measurements in live tissue has been set up at the PI's laboratory. It is currently being tested for optics optimisation and single-cell imaging in acute brain slices. 2. The paper dealing with nano-diffusion measurements in the brain extracellular space is in its final preparation stages.
Start Year 2018
 
Description GABA and glutamate imaging with genetically encoded sensors 
Organisation Janelia Research Campus
Country United States 
Sector Public 
PI Contribution Implementing physiological imaging experiments in slices and in vivo
Collaborator Contribution Providing newly created optical sensors
Impact Publications
Start Year 2020
 
Description HHMI Janelia Campus 
Organisation Howard Hughes Medical Institute
Department Janelia Research Campus
Country United States 
Sector Academic/University 
PI Contribution We have implemented their genetically encoded optical neurotranmistter indicators
Collaborator Contribution Supplied us with novel genetically encoded optical sensors
Impact article in press
Start Year 2022
 
Description Light- and filed-control microcapsules 
Organisation Queen Mary University of London
Country United Kingdom 
Sector Academic/University 
PI Contribution Carrying out imaging experiments in live brain tissue
Collaborator Contribution Design, production and supply of environment-controlled micro-capsules for drug delivery
Impact To be announced
Start Year 2009
 
Description Monitoring extracellular potassium with the optical sensor GINKO2 
Organisation University of Tokyo
Country Japan 
Sector Academic/University 
PI Contribution Developing and implementing protocols for GINKO2 measurements
Collaborator Contribution Developing and characterizing GINKO2 sensor
Impact Established how the astrocyte Kir4.1 expression level territorially controls excitatory transmission in the brain.
Start Year 2023
 
Description Spot-optogentics with CHROME 
Organisation University of California, Berkeley
Country United States 
Sector Academic/University 
PI Contribution Developing and implementing working protocols for spot-optogenetics with CHROME
Collaborator Contribution Developing and characterizing opsin CHROME
Impact New working protocols
Start Year 2023
 
Description Super-resolution microscopy 
Organisation University of Bordeaux
Country France 
Sector Academic/University 
PI Contribution 2PE imaging
Collaborator Contribution STED imaging
Impact publications
Start Year 2018
 
Description Supply of human brain tusse 
Organisation Cleveland Clinic London
Country United Kingdom 
Sector Hospitals 
PI Contribution Carrying out interdisciplinary experiments in live human brain tissue slices
Collaborator Contribution Supplying live human brain tissue specimens
Impact New working protocols and data
Start Year 2020
 
Description Supply of human brain tusse 
Organisation National Hospital for Neurology and Neurosurgery
Country United Kingdom 
Sector Hospitals 
PI Contribution Carrying out interdisciplinary experiments in live human brain tissue slices
Collaborator Contribution Supplying live human brain tissue specimens
Impact New working protocols and data
Start Year 2020
 
Title An updated large-scale Monte-Carlo model of synaptic environment 
Description A library of programs for Monte Carlo simulations of rapid molecular events inside and outside the synaptic cleft. Written by Drs L Savtchenko and K. Zheng. 
Type Of Technology Software 
Year Produced 2020 
Impact Several high-profile publications 
 
Title Neuroalgebra.net hosting simulation platforms 
Description Neuroalgebra.net website hosting simulation platforms ASTRO, BRAINCELL, and ARACHNE to explore realistic biophysical models of brain cells, cell-cell interactions, and cell network s 
Type Of Technology Software 
Year Produced 2024 
Open Source License? Yes  
Impact >50 registered users 
URL http://www.neuralgebra.net
 
Title Updated software for fluorecence anisotropy imaging 
Description An image analysis tool allowing to translate two FLIM signals (parallel and perpendicular) into local rotation correlation parameter across the imaged region of interest. Applied to map local instantaneous molecular diffusion. 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact Book chapter. Being implemented to gauge molecular diffusivity at nanoscale. 
 
Company Name Neuroalgebra Limited 
Description  
Year Established 2016 
Impact >50 registered users
Website http://neuroalgebra.com
 
Description A reviewer and nominator of major scientific prizes, cinluding Nobel Prize, Kyoto Prize, Millennium Technology, others 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Supporters
Results and Impact Being s reviewer and nominator of major scientific prizes, cinluding Nobel Prize, Kyoto Prize, Millennium Technology, others
Year(s) Of Engagement Activity 2020,2021,2022,2023,2024
 
Description Ingternational seminars and session at international meetings 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Invited platform presentations
Year(s) Of Engagement Activity 2017,2018,2019,2020,2021,2022,2023,2024
 
Description Membership of international advisory bodies and reviewing panels: 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? Yes
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Decisions made

Influencing science policy and funding
Year(s) Of Engagement Activity 2017,2018,2019,2020,2021,2022,2023,2024