Structural Glycobiology of Leukocyte Adhesion/Migration in the Lymphatics studied by NMR spectroscopy
Lead Research Organisation:
University of East Anglia
Department Name: Graduate Office
Abstract
Hyaluronan (HA), a glycosaminoglycan highly abundant at the interstitial matrix, plays a fundamental role in leukocyte adhesion/migration, by interacting with the leukocyte HA receptor CD44. During processes of immune surveillance and primary T-cell responses, the lymphatic system is exploited by leukocytes for trafficking from the tissues to the draining lymph nodes. However, the vessels of lymphatic system do not express CD44, but another HA receptor termed LYVE-1. Recombinant LYVE-1 form stable complexes with HA and soluble CD44 in vitro, supporting a role in trafficking of leukocytes to the lymph nodes in vivo, by HA-mediated adhesion of CD44-expressing cells to the basolateral and luminal surfaces of the lymphatic endothelium. HA is also found in high concentrations on the surfaces of tumour cells, along with an increased expression of CD44, and previous studies have found the HA surface content of tumour cells closely related to their ability to form node metastases. Although the 3D structure of the CD44-HA complex has been determined by X-ray and NMR, for LYVE-1 there is no high-resolution 3D molecular structure available.
We aim to reveal structural details on the recognition of ligands by LYVE-1 using NMR spectroscopy and computational methods. Ligand-based NMR experiments (saturation transfer difference NMR, transferred NOE, WaterLOGSY) will afford structural and affinity details, docking calculations will generate energetically favourable 3D molecular models of the complexes, and computational prediction of NMR observables will validate the 3D structures. The binding features of LYVE-1 will be compared to those of CD44, to extend our understanding in structural terms of the distinct properties of both receptors for the molecular recognition of HA, proposed to be key for leukocyte rolling.
The selected candidate will work in well-equipped laboratories, with access to state of the art HPC Cluster and powerful NMR equipment (mainly 800 and 500 MHz spectrometers), in a highly stimulating scientific environment that includes collaboration with internationally distinguished scientists at UEA and the Norwich Research Park (NRP).
We aim to reveal structural details on the recognition of ligands by LYVE-1 using NMR spectroscopy and computational methods. Ligand-based NMR experiments (saturation transfer difference NMR, transferred NOE, WaterLOGSY) will afford structural and affinity details, docking calculations will generate energetically favourable 3D molecular models of the complexes, and computational prediction of NMR observables will validate the 3D structures. The binding features of LYVE-1 will be compared to those of CD44, to extend our understanding in structural terms of the distinct properties of both receptors for the molecular recognition of HA, proposed to be key for leukocyte rolling.
The selected candidate will work in well-equipped laboratories, with access to state of the art HPC Cluster and powerful NMR equipment (mainly 800 and 500 MHz spectrometers), in a highly stimulating scientific environment that includes collaboration with internationally distinguished scientists at UEA and the Norwich Research Park (NRP).
Organisations
People |
ORCID iD |
Jesus Angulo (Primary Supervisor) | |
Samuel Walpole (Student) |
Publications
Bibic L
(2019)
Bug Off Pain: An Educational Virtual Reality Game on Spider Venoms and Chronic Pain for Public Engagement
in Journal of Chemical Education
Bidula SM
(2019)
Mapping a novel positive allosteric modulator binding site in the central vestibule region of human P2X7.
in Scientific reports
Dhuna K
(2019)
Ginsenosides Act As Positive Modulators of P2X4 Receptors.
in Molecular pharmacology
Kuhaudomlarp S
(2019)
Unravelling the Specificity of Laminaribiose Phosphorylase from Paenibacillus sp. YM-1 towards Donor Substrates Glucose/Mannose 1-Phosphate by Using X-ray Crystallography and Saturation Transfer Difference NMR Spectroscopy.
in Chembiochem : a European journal of chemical biology
Monaco S
(2020)
Exploring Multi-Subsite Binding Pockets in Proteins: DEEP-STD NMR Fingerprinting and Molecular Dynamics Unveil a Cryptic Subsite at the GM1 Binding Pocket of Cholera Toxin B.
in Chemistry (Weinheim an der Bergstrasse, Germany)
Nepravishta R
(2019)
Deriving Ligand Orientation in Weak Protein-Ligand Complexes by DEEP-STD NMR Spectroscopy in the Absence of Protein Chemical-Shift Assignment.
in Chembiochem : a European journal of chemical biology
Park JB
(2018)
Structural basis for arginine glycosylation of host substrates by bacterial effector proteins.
in Nature communications
Sequeira S
(2018)
Structural basis for the role of serine-rich repeat proteins from Lactobacillus reuteri in gut microbe-host interactions.
in Proceedings of the National Academy of Sciences of the United States of America
Tolchard J
(2018)
The intrinsically disordered Tarp protein from chlamydia binds actin with a partially preformed helix.
in Scientific reports
Walpole S
(2019)
Biological NMR Part B
Studentship Projects
Project Reference | Relationship | Related To | Start | End | Student Name |
---|---|---|---|---|---|
BB/M011216/1 | 30/09/2015 | 31/03/2024 | |||
1654460 | Studentship | BB/M011216/1 | 30/09/2015 | 29/09/2019 | Samuel Walpole |
Description | LYVE-1 is a protein found on the surface of lymphatic vessels and is important for trafficking cells during the normal function of the immune system. However, it can be exploited during diseases such as inflammation or cancer, giving it therapeutic importance. Therefore it is crucial understand its structure, dynamics and interaction with ligands. However, due to experimental difficulties, traditional routes such as x-ray crystallography have not been possible. Therefore we studied LYVE-1 and its interaction with its ligand, hyaluronic acid, using a combination of ligand-based NMR spectroscopy experiments and computational modelling. Importantly, we were able to produce a model of LYVE-1 that agreed well with our experimental data. We also studied a closely related protein, CD44, which is found instead on the surface of blood vessels. We showed that the interaction with hyaluronic acid with the two proteins has some fundamental differences in recognition and dynamics, and we are currently studying this in more detail using computational techniques. |
Exploitation Route | We are providing fundamental insights into the structure and dynamics of this protein. This data is important going forward for designing, predicting and explaining experiments and results based around this protein and its function in immunity, inflammation and cancer. Importantly, the structural data we provide may have impact in the design of future therapeutics, especially for designing selectivity between LYVE-1 and CD44. |
Sectors | Pharmaceuticals and Medical Biotechnology |