A multivalent vaccine and single platform diagnostic for bacterial respiratory diseases of pigs
Lead Research Organisation:
University of Cambridge
Department Name: Veterinary Medicine
Abstract
Pigs can get many diseases but amongst the most serious are those caused by bacteria that can live in their throats, airways or tonsils but can also cause severe lung (or brain) infections. Large numbers of animals may die quickly (acute infection) or fail to grow normally (chronic infection). Such infections cost the world's pig industry huge sums of money each year. A major problem is that such infections are difficult to diagnose. Some strains of a particular bacterium cause disease and others do not and there is no reliable method to distinguish them. Most experts agree that the best way to control the spread of bacteria is to use a vaccine. However, current vaccines are poor. They do not prevent the spread of bacteria from animal to animal and only work against a few strains. We plan to target four of the most common bacteria that cause infections in pigs: Actinobacillus pleuropneumoniae, Haemophilus parasuis, Mycoplasma hyopneumoniae and Streptococcus suis. The last of these can also cause serious disease in humans such as blood poisoning (septicaemia) and brain infection (meningitis) especially in people who work with pigs. Our aim is to develop (1) tests that can tell which strains can cause disease or not and (2) a single vaccine that protects against more than one of the pig pathogens. We will isolate bacteria from UK pigs and, using genetic techniques, find out how many different sorts of each bacterium are present. The results will be used to develop a diagnostic test and also help in choosing appropriate vaccine candidates. The work will be done in collaboration with partners in the Veterinary Laboratories Agency, Scottish Agricultural College, Agri-Food and Biosciences Institute and Huazhong Agricultural University (Wuhan, China). A successful conclusion to the project (diagnostics and vaccines) will prevent animal suffering (through reduction in infections via vaccination, early diagnosis and treatment, prevention of unnecessary treatment) and save the pig industry substantial amounts of money contributing to the prosperity of the UK.
Technical Summary
The worldwide economic/welfare burden resulting from bacterial respiratory diseases of pigs is enormous. Control of infection is hampered by the lack of efficacious vaccines and diagnostic tools. Problems include differentiating low/non-virulent/pathogenic strains and the incomplete correlation of phenotype to pathogenic potential. Traditional vaccines (bacterins) typically only protect against homologous strains and do not prevent colonisation. This research program concerns 4 major bacterial respiratory pathogens of pigs: A. pleuropneumoniae, H. parasuis, M. hyopneumoniae and S. suis. All cause substantial mortality and morbidity in pigs worldwide. Additionally S. suis causes severe outbreaks of human infection. There is an international imperative for improved diagnostics and vaccines for all these pathogens. Now is the opportunity to exploit genome data and technical innovations, many of which have been pioneered by the applicants. A multi-centre integrated approach will be used to develop a multivalent vaccine and single platform diagnostic for the 4 bacteria. The largest known collection of disease/non-disease associated UK isolates will be assembled and subjected to MLST and comparative phylogenetics (genomotyping). The data will be used to develop a genotypic based diagnostic. Genetic tools will be developed that allow mutagenesis and/or heterologous antigen expression. Functional genomic screens and follow up studies will identify live attenuated vaccine (LAVs) candidates and conserved immunogenic proteins. The latter will be used as the basis for protein array-based diagnostics and be heterologously expressed either in LAVs or vaccines based on protein glycan coupling technology. The multivalent vaccine and single platform diagnostics will be evaluated in experimental and field trials in collaboration with UK /Chinese veterinarians. The major deliverable will be to reduce animal suffering and the economic and welfare burden of disease in the pig industry.
Publications
Atack JM
(2018)
Streptococcus suis contains multiple phase-variable methyltransferases that show a discrete lineage distribution.
in Nucleic acids research
Baig A
(2015)
Whole genome investigation of a divergent clade of the pathogen Streptococcus suis.
in Frontiers in microbiology
Bello-Ortí B
(2014)
Biofilm formation by virulent and non-virulent strains of Haemophilus parasuis.
in Veterinary research
Bello-Ortí B
(2015)
Metatranscriptomics reveals metabolic adaptation and induction of virulence factors by Haemophilus parasuis during lung infection.
in Veterinary research
Description | This work has produced vastly improved diagnostic methods for detecting important respiratory pathogens, such as Streptococcus suis and Haemophilus parasuis in pigs, by understanding the genome (complete DNA) sequences of a large collection of bacteria isolated over a period of time from the UK, Vietnam and several other countries. We have also shown which genes are required for these bacteria to colonize pig tissue from the upper respiratory tract (nasal tissue and trachea). |
Exploitation Route | Development of diagnostics and vaccines. |
Sectors | Agriculture Food and Drink Healthcare Pharmaceuticals and Medical Biotechnology |
Description | Our findings have been published in scientific journals. Some of our findings have been patented and collaborative discussions continue with industrial partners. Pipelines for whole genome sequence analysis of large numbers of endemic bacterial agents are now benefitting from the early publications generate by this project in the field (Streptococcus suis and Haemophilus/Glaesserella parasuis). These tools are now widely used in the North American pig industry to support profiling of herds and pig flows for these pathogens. In turn this is enabling much improved preventive health programs using autogenous vaccines, and selected mixing rather than reliance on prophylactic and responsive antibiotics. |
First Year Of Impact | 2013 |
Sector | Agriculture, Food and Drink,Other |
Impact Types | Economic |
Description | Membership of FSA's Advisory Committee on Microbiological Safety of Food |
Geographic Reach | National |
Policy Influence Type | Membership of a guideline committee |
Impact | ACMSF and its subgroups provides advice and recommendation the FSA Board. In turn the FSA contributes to the evolution of UK food safety legislation and its implementation. |
Description | Characterisation of the putative virulence factors of S. suis |
Amount | £100,000 (GBP) |
Organisation | Cambridge Commonwealth Trust |
Sector | Academic/University |
Country | United Kingdom |
Start | 01/2010 |
End | 01/2013 |
Description | Models of mixed respiratory infections in pigs - functional genomics, vaccines and diagnostic development |
Amount | £23,500 (GBP) |
Funding ID | BB/J020664/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2012 |
End | 02/2014 |
Description | Molecular tools for detection and control of Streptococcus suis. |
Amount | £160,000 (GBP) |
Funding ID | BB/L502479/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 09/2013 |
End | 10/2017 |
Description | New approaches to diagnosis and management of H. parasuis related disease |
Amount | £63,000 (GBP) |
Organisation | British Pig Executive BPEX |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2011 |
End | 09/2014 |
Description | New approaches to diagnosis and management of H. parasuis related disease |
Amount | £63,000 (GBP) |
Organisation | British Pig Executive BPEX |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2011 |
End | 10/2014 |
Description | Project funded under China-UK cooperation program in global priorities. |
Amount | £196,363 (GBP) |
Funding ID | BB/L003902/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2013 |
End | 04/2015 |
Description | Streptococcus suis subunit vaccine protection study |
Amount | £130,000 (GBP) |
Organisation | Zoetis |
Sector | Private |
Country | United States |
Start | 12/2015 |
End | 11/2016 |
Title | Development of a Multiplex PCR Assay for Molecular Serotyping of Haemophilus parasuis. |
Description | A multiplex PCR system which is based on variation within the capsule loci of the 15 serovars of H. parasuis for rapid molecular serotyping. The multiplex PCR (mPCR) distinguishes between all previously described serovars except 5 and 12, both of which can be detected by one pair of primers. |
Type Of Material | Technology assay or reagent |
Provided To Others? | No |
Impact | This is an improvement on currently available serotyping methods. |
URL | http://www.ncbi.nlm.nih.gov/pubmed/26424843 |
Title | Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12. |
Description | An improved multiplex PCR, using redesigned primers targeting the serovar 3 capsule locus, which differentiates serovars 3, 6, and 8 Actinobacillus pleuropneumoniae isolates. The new primers eliminate an aberrant serovar 3-indicative amplicon found in some serovar 6 clinical isolates. Furthermore, we have developed a new multiplex PCR for the detection of serovars 1 to 3, 5 to 8, 10, and 12 along with apxIV, thus extending the utility of this diagnostic PCR to cover a broader range of isolates. |
Type Of Material | Technology assay or reagent |
Provided To Others? | No |
Impact | This is an improvement on currently available diagnostic techniques for APP. |
URL | http://www.ncbi.nlm.nih.gov/pubmed/24759717 |
Title | Tn5 Transposon library of the pig respiratory pathogen, Haemophilus parasuis |
Description | A Tn5 transposon library of Haemophilus parasuis which has been analyzed by TraDIS to identify the transposon integration sites. this can be used for screening pools of mutants in a selective system to investigate gene function. |
Type Of Material | Biological samples |
Year Produced | 2014 |
Provided To Others? | Yes |
Impact | Identification of live attenuated vaccine strains. |
URL | http://www.ncbi.nlm.nih.gov/pubmed/23928120 |
Title | Tn917 Transposon library of the pig respiratory pathogen, Streptococcus suis |
Description | A Tn917 transposon library of Streptococcus suis which has been analyzed by TraDIS to identify the transposon integration sites and which has been used to infect an in vitro organ culture model of porcine respiratory tissue. The transposon libary can be used for screening pools of mutants in a selective system to investigate gene function. |
Type Of Material | Biological samples |
Year Produced | 2014 |
Provided To Others? | Yes |
Impact | Identification of genes encoding proteins likely to be required for colonization of the pig upper respiratory tract. The proteins are being investigated to assess their efficacy as vaccines against infection with S. suis. |
Title | Additional file 1 of Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis |
Description | Additional file 1: Table S1. The 678 isolates in our collection with meta data, MIC values and candidate determinant presence/absence. |
Type Of Material | Database/Collection of data |
Year Produced | 2021 |
Provided To Others? | Yes |
URL | https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Large-scale_genomic_analys... |
Title | Additional file 1 of Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis |
Description | Additional file 1: Table S1. The 678 isolates in our collection with meta data, MIC values and candidate determinant presence/absence. |
Type Of Material | Database/Collection of data |
Year Produced | 2021 |
Provided To Others? | Yes |
URL | https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Large-scale_genomic_analys... |
Title | Additional file 3 of Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis |
Description | Additional file 3: Table S3 -The 401 additional isolates used to estimate population structure with their genetic BAPs cluster and their data availability. |
Type Of Material | Database/Collection of data |
Year Produced | 2021 |
Provided To Others? | Yes |
URL | https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Large-scale_genomic_analys... |
Title | Additional file 3 of Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis |
Description | Additional file 3: Table S3 -The 401 additional isolates used to estimate population structure with their genetic BAPs cluster and their data availability. |
Type Of Material | Database/Collection of data |
Year Produced | 2021 |
Provided To Others? | Yes |
URL | https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Large-scale_genomic_analys... |
Title | Meta-data of clinical details of pigs submitted for post-mortem in England and Wales 2011-2015 |
Description | Clinical details of pigs submitted for post-mortem in England and Wales 2011-2015. Stains of Streptococcus suis, Haemophilus parasuis and Actinobacillus pleuropneumoniae were isolated and genome sequenced. Genome sequence data was analyzed to gain an understanding of pathogenicity of the organisms. |
Type Of Material | Database/Collection of data |
Year Produced | 2015 |
Provided To Others? | Yes |
Impact | An understanding of the difference between bacteria which cause disease and those that are carried asymptomatically. |
Title | Streptococcus suis TraDIS data from in vitro organ culture experiments |
Description | This database can be analyzed to identify transposon mutants screened in pools which are relatively less fit than others and hence may be attenuated in fitness or ability to colonize respiratory tissue in organ culture. |
Type Of Material | Database/Collection of data |
Year Produced | 2014 |
Provided To Others? | Yes |
Impact | An understanding of the difference between bacteria which cause disease and those that are attenuated and have potential to be used as live-attenuated vaccines or that are missing a key component of their cell surface which renders them unable to colonize, invade and cause disease. |
Description | Centre de Recerca en Sanitat Animal (CReSA) Collaboration |
Organisation | Cresa |
Country | United States |
Sector | Private |
PI Contribution | New collaboration regarding Haemophilus parasuis |
Start Year | 2011 |
Description | Clinical Research Unit - Ho Chi Minh |
Organisation | University of Oxford |
Department | Oxford University Clinical Research Unit Vietnam (OUCRU) |
Country | Viet Nam |
Sector | Academic/University |
PI Contribution | Work on Strep. suis |
Start Year | 2011 |
Description | Danish Technical University |
Organisation | Technical University of Denmark |
Country | Denmark |
Sector | Academic/University |
PI Contribution | Collaboration on Haemophilus parasuis |
Start Year | 2011 |
Description | In vivo studies of candidate vaccines against bacterial respiratory pathogens of pigs |
Organisation | U.S. Department of Agriculture USDA |
Department | National Animal Disease Center |
Country | United States |
Sector | Public |
PI Contribution | A collaboration with USDA ARS in Ames, Iowa, USA enabling sharing of facilities and expertise for the preliminary evaluation of candidate vaccines using animal challenge models already established at USDA. |
Start Year | 2013 |
Title | PENTAVALENT STREPTOCOCCUS SUIS VACCINE COMPOSITION |
Description | This invention relates to vaccine compositions for use against Streptococcus suis that comprise one or more isolated immunogenic polypeptide(s) selected from SSU0185, SSU1215, SSU1355, SSU1773 and SSU1915. Vaccine compositions and methods for their production and use in treating S. suis infection, for example in pig and human populations, are provided. |
IP Reference | WO2018162428 |
Protection | Patent application published |
Year Protection Granted | 2018 |
Licensed | No |
Impact | Detailed discussion with 1 Animal Health company. Further discussions planned with a second AH Company. |
Description | Ceva Animal Health Symposium on A. pleuropneumoniae |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Sparked discussion on the topic of diagnostic approaches for A. pleuropneumoniae None specific |
Year(s) Of Engagement Activity | 2014 |
Description | European Symposium on Pig Health Management 2013 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | This was an invited lecture to discuss the interaction between bacterial pathogens (Strep suis) environment and host susceptibility. Sparked questions and further invitations to speak at subsequent international meetings. None specific |
Year(s) Of Engagement Activity | 2013 |
Description | European Symposium on Pig Health Management 2015 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | We presented data on diagnostic approaches for Streptococcus suis and antimicrobial susceptibility data. |
Year(s) Of Engagement Activity | 2015 |
Description | IPVS 2012, Korea |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Questions and discussion followed. discussions on potential collaborations. |
Year(s) Of Engagement Activity | 2012 |
Description | International Pig Veterinary Society 2016 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Outcomes of the project will be presented in oral and poster presentations, confirmed as accepted for publication: including antibiotic susceptibility; prevalence and diversity of Strep suis carriage in UK and China and the impact of temperature. |
Year(s) Of Engagement Activity | 2016 |
Description | Norfolk, Suffolk, Essex, Cambs Pig Discussion Groups |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Presentation to vet practitioners on best practices for diagnosis, treatment and prevention of S. suis disease in laughter pig production systems. Follow-up phone discussions, changes in vaccination strategies, and herd management methods. |
Year(s) Of Engagement Activity | 2014 |
Description | Nottingham University Seminar |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Professional Practitioners |
Results and Impact | A seminar on natural history of Streptococcus suis in the pig meat supply chain was given at Nottingham University The audience comprise academics and also members of policy making committees in government. There was active discussion and a subsequent meeting to plan future research collaborations. |
Year(s) Of Engagement Activity | 2015 |
Description | PIC China Symposium |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The PI (Tucker) gave a presentation at the PIC China Symposium on the management and prevention of infectious diseases of pigs, including Streptococcus suis. |
Year(s) Of Engagement Activity | 2015 |
URL | http://www.wattagnet.com/articles/24751-pic-chinas-2015-symposium-highlights-value-components |
Description | Polish Swine Conference 2013 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Questions and discussion on the topic of management of pig respiratory health. Follow-up discussions with Professor Pesjak, Head of Pulawy Inst. |
Year(s) Of Engagement Activity | 2013 |
Description | Scottish pig producer group 2014 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Talk stimulated reflection of effectiveness of respiratory disease control in group members' pig production units. Further phone discussions. Triggered change in diagnostics and vaccination programme. |
Year(s) Of Engagement Activity | 2014 |
Description | Streptococcus suis Workshop 2016: The dynamics of Streptococcus suis carriage in recently weaned and slaughter-aged pigs in China and UK |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The workshop was attended by around 80 global specialist researchers, medics and veterinarians with interest in Streptococcus suis associated disease management. |
Year(s) Of Engagement Activity | 2016 |
Description | UK Pig Vet Soc 2014 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Talk sparked questions and discussion Interest expressed in new diagnostic methodologies arising from our work. |
Year(s) Of Engagement Activity | 2014 |
Description | Update on Streptococcus suis: epidemiology, diagnosis and control |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Research updates were provided to members of the UK Animal and Plant Health Agency's Pig Expert Group. Specifically progress on new vaccine development, diagnostic approaches and non-antimicrobial control strategies. |
Year(s) Of Engagement Activity | 2016 |
Description | Vet Public Health Assoc conference 2014 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Lecture sparked questions and discussion. Nothing major. |
Year(s) Of Engagement Activity | 2014 |
Description | Wuhan Pig Veterinary Congress, 2013 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Talk sparked questions and discussion on diagnosis and management of Streptococcal diseases in pigs. None specific |
Year(s) Of Engagement Activity | 2013 |