Fluorometry for Rapid Eutrophication Status and Cyanobacteria Assessment (FRESCA)
Lead Research Organisation:
University of Stirling
Department Name: Biological and Environmental Sciences
Abstract
Eutrophication of inland waters causes increased occurrence of cyanobacterial blooms, requiring intensive monitoring. FRESCA provides a theoretical basis, prototypes, testing and commercialisation of a low-cost mobile fluorescence sensor. The sensor exploits fluorescence excitation and emission properties of cyanobacteria, which are often poorly dealt with in fluorometers. A mechanistic interpretation of the measured signal provides unambiguous diagnosis of cyanobacteria status of natural waters.
The project will include sensor prototyping (by industrial partner Chelsea Technologies Group), laboratory experiments, optical simulations (Plymouth Marine Laboratory) and performance tests and validation in nature (University of Stirling). Lab experiments will characterize diagnostic cyanobacterial fluorescence properties which the sensor will exploit, including: (A) weak millisecond-fluorescence response to saturating light at wavelengths corresponding to photosystem-I compared to photosystem-II emission [2]; (B) reversible uncoupling of phycobilisomal energy transfer under saturating light with emission shifting from 670 nm to shorter wavelengths, within minutes of exposure, and (C) weak but measurable inducibility of phycobilisomal fluorescence at 670 nm and fluorescence quenching at the phycobilisome under prolonged light exposure. These laboratory characterizations will be used to build a model of cyanobacteria fluorescence induction, in turn used to define minimum and ideal sensor specifications. These will be developed into a series of prototypes that will be tested in the field.
The project will include sensor prototyping (by industrial partner Chelsea Technologies Group), laboratory experiments, optical simulations (Plymouth Marine Laboratory) and performance tests and validation in nature (University of Stirling). Lab experiments will characterize diagnostic cyanobacterial fluorescence properties which the sensor will exploit, including: (A) weak millisecond-fluorescence response to saturating light at wavelengths corresponding to photosystem-I compared to photosystem-II emission [2]; (B) reversible uncoupling of phycobilisomal energy transfer under saturating light with emission shifting from 670 nm to shorter wavelengths, within minutes of exposure, and (C) weak but measurable inducibility of phycobilisomal fluorescence at 670 nm and fluorescence quenching at the phycobilisome under prolonged light exposure. These laboratory characterizations will be used to build a model of cyanobacteria fluorescence induction, in turn used to define minimum and ideal sensor specifications. These will be developed into a series of prototypes that will be tested in the field.
Publications
Courtecuisse E
(2023)
Optimising Multispectral Active Fluorescence to Distinguish the Photosynthetic Variability of Cyanobacteria and Algae
in Sensors
Courtecuisse E
(2022)
Determination of optical markers of cyanobacterial physiology from fluorescence kinetics.
in Journal of plankton research
Courtecuisse, E.
(2023)
Assessing the photo-physiology of cyanobacteria using active fluorescence
Studentship Projects
Project Reference | Relationship | Related To | Start | End | Student Name |
---|---|---|---|---|---|
NE/R011605/1 | 01/01/2018 | 31/12/2022 | |||
1983680 | Studentship | NE/R011605/1 | 01/01/2018 | 31/12/2022 | Emilie Courtecuisse |
NE/W502753/1 | 31/03/2021 | 30/03/2022 | |||
1983680 | Studentship | NE/W502753/1 | 01/01/2018 | 31/12/2022 | Emilie Courtecuisse |
Title | Optimising multispectral active fluorescence to distinguish the photosynthetic variability of cyanobacteria and algae |
Description | Dataset underlying the following paper: Courtecuisse, E.; Marchetti, E.; Oxborough, K.; Hunter, P.D.; Spyrakos, E.; Tilstone, G.H.; Simis, S.G.H. Optimising Multispectral Active Fluorescence to Distinguish the Photosynthetic Variability of Cyanobacteria and Algae. Sensors 2023, 23 This study assesses the ability of a new active fluorometer, the LabSTAF, to diagnostically assess the physiology of freshwater cyanobacteria in a reservoir exhibiting annual blooms. Specifically, we analyse the correlation of relative cyanobacteria abundance with photosynthetic parameters derived from fluorescence light curves (FLCs) obtained using several combinations of excitation wavebands, photosystem II (PSII) excitation spectra and the emission ratio of 730 over 685 nm (Fo(730/685)) using obtained with excitation protocols with varying degrees of sensitivity to cyanobacteria and algae. FLCs captured obtained with blue excitation (B) and green-orange-red (GOR) excitation wavebands capture physiology parameters of algae and cyanobacteria, respectively. The green-orange (GO) protocol, expected to have the best diagnostic properties for cyanobacteria, did not guarantee PSII saturation. PSII excitation spectra showed distinct response from cyanobacteria and algae, depending on spectral optimisation of the light dose. Fo(730/685), obtained using a combination of GOR excitation wavebands, Fo(GOR, 730/685), showed a significant correlation with the relative abundance of cyanobacteria (linear regression, p-value < 0.01, adjusted R2 = 0.42). We recommend using, in parallel, Fo(GOR, 730/685), PSII excitation spectra (appropriately optimised for cyanobacteria versus algae), and physiological parameters derived from the FLCs obtained with GOR and B protocols to assess the physiology of cyanobacteria and to ultimately predict their growth. Higher intensity LEDs (G and O) should be considered to reach PSII saturation to further increase diagnostic sensitivity to the cyanobacteria component of the community. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | The paper "Optimising Multispectral Active Fluorescence to Distinguish the Photosynthetic Variability of Cyanobacteria and Algae" (Courtecuisse et al., 2023) doi: 10.3390/s23010461) is based on this dataset. |
URL | https://zenodo.org/record/7469162 |
Description | SCOR Working Group 156 - Active Chlorophyll fluorescence for autonomous measurements of global marine primary productivity |
Organisation | University of British Columbia |
Country | Canada |
Sector | Academic/University |
PI Contribution | We provide expertise on aquatic fluorescence, remote sensing and data handling as well as laboratory experiments on cyanobacterial fluorescence to this international SCOR working group |
Collaborator Contribution | The group is working towards a Standard Operating Procedure giving advice to sensor manufacturers and operators for improved standardization of single-turnover fluorescence observations to characterize phytoplankon physiology. |
Impact | Ongoing work towards a literature review and Standard Operating Procedure. |
Start Year | 2019 |
Description | SCOR Working Group 156 - Active Chlorophyll fluorescence for autonomous measurements of global marine primary productivity |
Organisation | University of Technology Sydney |
Country | Australia |
Sector | Academic/University |
PI Contribution | We provide expertise on aquatic fluorescence, remote sensing and data handling as well as laboratory experiments on cyanobacterial fluorescence to this international SCOR working group |
Collaborator Contribution | The group is working towards a Standard Operating Procedure giving advice to sensor manufacturers and operators for improved standardization of single-turnover fluorescence observations to characterize phytoplankon physiology. |
Impact | Ongoing work towards a literature review and Standard Operating Procedure. |
Start Year | 2019 |
Description | Poster at the OCEAN CARBON FROM SPACE WORKSHOP 2022- "Novel Fluorescence Induction Protocols For Cyanobacteria Detection in Natural Samples" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | The online conference had for objective to discuss about pools and main processes of Ocean Carbon observed from space. My work focus on in situ measurements but I benefited from talking to scientists who have a different point of view and are from a different background. |
Year(s) Of Engagement Activity | 2022 |
Description | Presentation of my research at the Plymouth City college-"Bio-optics technics to discriminate toxic algae" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | I went with colleagues of my institute presenting my research to students at the Plymouth City college. It was an interesting to learn how to do an educational presentation and I liked intereracting with students. |
Year(s) Of Engagement Activity | 2019 |
Description | Talk to the British Phycological Conference (2020)-"Fluorometry techniques for freshwater cyanobacteria assessment" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | I presented my research at this internatinational conference in a student session. I could compare my talk to others students and realize others way to present my research. Questions were asked at the end of the talk so I could interact with scientist and explain my research. My first supervisor was present as well and I got feedbacks afterwards. |
Year(s) Of Engagement Activity | 2020 |
Description | Talk to the PlyMSEF conference (2020)-"Fluorometry techniques for freshwater cyanobacteria assessment" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Postgraduate students |
Results and Impact | I presented my research to this students conference. I could reply to questions and I had an interesting conversation about my research and applications with a former scientist. |
Year(s) Of Engagement Activity | 2020 |