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Pushing the Envelope: Defining a Cytoskeletal-like Protein Required for Spore Development

Lead Research Organisation: University of Warwick
Department Name: School of Life Sciences

Abstract

Cell shape is an important feature of living organisms, linked to their function and ability to survive in the environment. In bacteria, the maintenance of cell shape is governed by the assembly and remodelling of their external layers, known as the cell envelope. Known antibiotics target the bacterial cell envelope and affect bacterial cell shape, leading to reduced bacterial survival and death. Thus, understanding the mechanisms underlying bacterial cell shape and cell envelope assembly can lead to new opportunities in drug development. In this project we focus on a new molecular process that controls the cell shape and cell envelope assembly of bacterial endospores (spores), one of the toughest cell types on Earth.

Spores are highly-resistant, dormant cells produced by some bacteria to survive starvation stress. Spore can persist in the environment for extended periods of time. In response to nutrient availability, or other signals, spores "reactivate" into growing bacteria through a process called germination. Spores have a defined shape and harbor a complex, multilayered cell envelope that contributes to their resistance properties and persistence in the environment. Some bacteria produce spores that underlie recurring and often deadly infections in humans, animals and pollinator insects. Spores can also contaminate food, compromise food safety and lead to food poisoning. Importantly, spores are not affected by current antibiotics and they resist common sterilisation strategies that kill growing bacteria.

While multiple studies have contributed to defining the complex composition of the spore envelope, less is known about the molecular mechanisms that regulate spore shape and the assembly of the spore envelope, which appear to be connected. By bringing together a team of experts in molecular genetics, biochemistry, cell biology and structural biology methods, this project expects to define a novel molecular process required for the assembly of the spore envelope and the maintenance of spore shape. Preliminary data suggest this mechanism employs a protein that may function like a structural scaffold on the inside of the spore and contributes to spore shape and assembly of an important spore envelope layer, the cortex. The cortex not only contributes to spore resistance properties but also plays a critical role in their exit from dormancy through germination.

The project's primary expected outcome is new knowledge of how bacteria transform into spores. The benefit of this new knowledge is that it will deepen and grow our understanding of bacterial spores and how bacteria build the highly-resistant spore cell envelope. This knowledge may provide a platform from which biotechnology industries could explore innovative strategies for controlling spore-forming bacteria. This project will also provide training to the next generation of microbiologists, securing Britain's future in Microbiology, a field that is critical to animal, human and environmental health, as well as food safety.

Technical Summary

Cellular morphology is an important attribute linked to cell function and environmental adaptation. In bacteria, the maintenance of cellular morphology is governed by assembly and remodelling of the cell envelope and cytoskeletal-like proteins. In this project we focus on new biology controlling the morphology and envelope assembly of bacterial endospores (spores), one of the most resistant cell types on Earth.

Spores are highly resistant, dormant cells produced by some bacteria to survive starvation stress. Known pathogens (e.g. Bacillus anthracis, Clostridioides difficile, Paenibacillus larvae and Bacillus cereus) produce spores that underlie recurring and often deadly infections in humans, animals and pollinator insects and cause food poisoning. Spores have a defined shape and a complex, cell envelope, composed of multiple proteins and peptidoglycan, that contributes to their resistance to chemicals, heat and digestion by immune cells. By utilizing approaches in genetics, biochemistry, cell biology and structural biology, this project expects to reveal a new molecular mechanism regulating the assembly of the spore envelope and maintenance of spore shape. Preliminary data in genetics, cell biology and biochemistry suggest this mechanism employs a poorly-defined, cytoskeletal-like protein and a known signalling protease, to maintain spore shape and efficient assembly of the spore cortex - a thick layer of specialised peptidoglycan that contributes to spore resistance properties and germination.

The expected outcome is new knowledge of how bacteria develop into spores and how bacteria build their cell envelope. This new knowledge may provide a platform from which industry could explore innovative strategies for controlling spore-forming bacteria. This project will also provide training to the next generation of microbiologists, securing Britain's future in Microbiology, a field that is critical to animal, human and environmental health, as well as food safety.

Publications

10 25 50
 
Title Bacterial Cell Lines required to develop this award 
Description We have developed additional bacterial cell lines to develop experimental aims related to this award - this includes cells of Bacillus subtilis. 
Type Of Material Cell line 
Year Produced 2024 
Provided To Others? No  
Impact The impact is that we have even able to complete various project objectives, finalise a manuscript (submission before the end of March 2025) and share a completed part of the proposed project to the research community at a conference. 
 
Title Various bacterial strains to develop aims related to the award 
Description We have developed various bacterial tools to tests specific experimental questions associated with this award. 
Type Of Material Cell line 
Year Produced 2023 
Provided To Others? No  
Impact The impact of these bacterial strains is related to our ability to pursue the line of investigation as initially intended (i.e to test our working hypothesis). Without the successful generation of these tools, we would have not been able to advance the project. 
 
Description Training and data collection - Transmission electron microscopy of Bacterial Spores 
Organisation University of Sheffield
Department Department of Molecular Biology and Biotechnology
Country United Kingdom 
Sector Academic/University 
PI Contribution Sharing of samples related to this award
Collaborator Contribution Sharing of know-how on the preparation and imaging of bacterial endospores using transmission electron microscopy
Impact Transmission electron microscopy images of bacterial spores related to specific objectives of the funded award.
Start Year 2024
 
Title ConservFold: Conservation and 3D Structure Generator 
Description The software is a computational tool that allows researchers to visualise conserved amino acids within a protein sequence. The tool is available on my laboratory webpage. 
Type Of Technology Webtool/Application 
Year Produced 2024 
Impact The tool when created was shared on Twitter and received numerous retweets (94) and over 79,000 views, and usage from the scientific community. We have also used the tool in undergraduate research projects, where students have been taught to use the tool to probe conserved amino acids in proteins related to the theme of the research award. Thus the tool has been used to advance the learning of undergraduate students. 
URL https://www.rodrigueslab.com/resources
 
Description Presentation at the University of Bath in 2025 covering aspects of the research funded by this award 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact The microbiology community at University of Bath attended the presentation I delivered and was focused on aspects of this research award. In addition, I spoke to several graduate students in microbiology and we discussed research interests and their career prospects. I also spoke in more detail to a graduate student working on a project that is on a similar topic to this award in an Industry setting. I made some recommendations to this student, based on my experience, on how they should plan their project and provided them with some academic contacts that could further enrich their knowledge and development of their project.
Year(s) Of Engagement Activity 2025