New generation of biosensors using nanopore extended Field Effect Transistors (NexFET)
Lead Research Organisation:
Imperial College London
Department Name: Metabolism, Digestion and Reproduction
Abstract
Biosensors are an integral and increasingly important part of modern life sciences and new developments in biosensor technologies are increasingly seeing their application in the process industry, security, environmental and biodefense application markets. We seek to address the limitations of current diagnostics and we propose the development of a radical new nanotechnology for high throughput electronic recognition of neurotransmitters. While there are some moves to develop nanotechnology approaches to biosensing, these have yet to make a mark and there remains an unmet need in the development of lab-on-chip biosensors that are affordable, integrated, fast, capable of multiplexed detection and monitoring, and crucially, highly selective which can detect trace levels of analyte in biological fluids. This proposal directly addresses these issues. This will be achieved by designing a new class of nanoscale FET sensors dubbed NexFET (nanopore extended Field Effect Transistor) that combine the advantages of nanopore single molecule sensors, FET's and recognition chemistry.
EPSRC's strategy states that it wishes to encourage new ways of thinking, develop new tools and stimulate further investigation in bioscience, medicine and environmental sciences within UK industry and other parts of government such as the NHS. A wide array of important biological and clinical problems exist that could be addressed with such bionanosensors. These include the study of cell growth, differentiation, migration, viral entry, immune system function and signal transduction involved in aging, cardiomyopathy, neurodegeneration, and cancer. Most of these processes involve biologically relevant molecules in cells and their environments. Thus the generation of nanosensors to measure these biological molecules in real time with high sensitivity and accuracy is potentially extremely valuable. The proposal contributes towards the EPSRC areas of Analytical Science, Diagnostics and Healthcare Technologies, and especially in the context of development of novel tools, methods, and technologies in the physical and biological sciences. It will provide the basis for a novel, easy to use, robust and inexpensive sensor technology, for the detection of neurotransmitters and proteins in-vitro in biological fluids.
EPSRC's strategy states that it wishes to encourage new ways of thinking, develop new tools and stimulate further investigation in bioscience, medicine and environmental sciences within UK industry and other parts of government such as the NHS. A wide array of important biological and clinical problems exist that could be addressed with such bionanosensors. These include the study of cell growth, differentiation, migration, viral entry, immune system function and signal transduction involved in aging, cardiomyopathy, neurodegeneration, and cancer. Most of these processes involve biologically relevant molecules in cells and their environments. Thus the generation of nanosensors to measure these biological molecules in real time with high sensitivity and accuracy is potentially extremely valuable. The proposal contributes towards the EPSRC areas of Analytical Science, Diagnostics and Healthcare Technologies, and especially in the context of development of novel tools, methods, and technologies in the physical and biological sciences. It will provide the basis for a novel, easy to use, robust and inexpensive sensor technology, for the detection of neurotransmitters and proteins in-vitro in biological fluids.
Planned Impact
This project will deliver an unprecedented advance in single-molecule, label-free sensing that will contribute substantially to the UK's global leadership in this area. The major outputs will be (i) a step-change in the development of new analytical and biophysical tools and (ii) interdisciplinary training for early-career researchers. (iii) This proposal also contributes to the current EPSRC Strategic Research Priority of Technology development for the biosciences. We anticipate that this will benefit policymakers, funding bodies and academic institutions by providing clear evidence of the value of interdisciplinary research for the future of UK science.
This proposal will lead to direct impact in a number of different areas:
Communications and engagement. All parties have strong commitments to knowledge exchange. The results of these studies will be published in top journals, after filing of any patents to protect the IP. In particular, we will present at biophysical, scanning probe and also medical meetings to ensure that those working in this area are aware of these advances in the field.
Academic Collaborations: the applicants on this grant all have numerous academic collaborators both within our institutions and worldwide, who can both provide input into and benefit from this research. Additionally, the radical nature of this research proposal provides an opportunity to seek new collaborations and industrial partners. A collaboration has recently been established with Prof David Dexter (Division of Brain Science, ICL) and he has agreed to contribute his expertise and clinical samples. He has 30 years of experience in the field of understanding the pathological mechanisms involved in the development of PD and the development of novel therapeutics through in-vitro and in-vivo animal models and clinical trials. In 2002 David set up the internationally renowned Parkinson's UK Tissue Bank where clinical samples (both brain and CSF). Other collaborations will be established with groups that have interests in nanoscale sensors for clinical applications (e.g. Prof Minjun Kim, Drexel University, and Prof Jaebum Choo, Hanyang University).
Industrial Collaborations: the radical nature of this research proposal provides new opportunities to develop both existing and potentially new collaborations with industrial partners. Related to this proposal, YK and DK have co-founded Ionscope Ltd which has and will result in efficient knowledge transfer especially related to objective 4 of this proposal. JBE and AI have strong links with Raith Technologies GmbH and Siemens Healthcare in Germany and Hitachi in Japan.
Transferable skills: the training provided to the researcher, on this project will increase the availability of highly skilled workers in the UK that will be an advantage in a knowledge-based economy. In addition, it will also lead to enhanced skills and knowledge for the leading academics that will inform their ability to progress the future development of this project.
This proposal will lead to direct impact in a number of different areas:
Communications and engagement. All parties have strong commitments to knowledge exchange. The results of these studies will be published in top journals, after filing of any patents to protect the IP. In particular, we will present at biophysical, scanning probe and also medical meetings to ensure that those working in this area are aware of these advances in the field.
Academic Collaborations: the applicants on this grant all have numerous academic collaborators both within our institutions and worldwide, who can both provide input into and benefit from this research. Additionally, the radical nature of this research proposal provides an opportunity to seek new collaborations and industrial partners. A collaboration has recently been established with Prof David Dexter (Division of Brain Science, ICL) and he has agreed to contribute his expertise and clinical samples. He has 30 years of experience in the field of understanding the pathological mechanisms involved in the development of PD and the development of novel therapeutics through in-vitro and in-vivo animal models and clinical trials. In 2002 David set up the internationally renowned Parkinson's UK Tissue Bank where clinical samples (both brain and CSF). Other collaborations will be established with groups that have interests in nanoscale sensors for clinical applications (e.g. Prof Minjun Kim, Drexel University, and Prof Jaebum Choo, Hanyang University).
Industrial Collaborations: the radical nature of this research proposal provides new opportunities to develop both existing and potentially new collaborations with industrial partners. Related to this proposal, YK and DK have co-founded Ionscope Ltd which has and will result in efficient knowledge transfer especially related to objective 4 of this proposal. JBE and AI have strong links with Raith Technologies GmbH and Siemens Healthcare in Germany and Hitachi in Japan.
Transferable skills: the training provided to the researcher, on this project will increase the availability of highly skilled workers in the UK that will be an advantage in a knowledge-based economy. In addition, it will also lead to enhanced skills and knowledge for the leading academics that will inform their ability to progress the future development of this project.
Organisations
Publications
Xue L
(2018)
Gated Single-Molecule Transport in Double-Barreled Nanopores.
in ACS applied materials & interfaces
Ivanov AP
(2018)
Scissoring genes with light.
in Nature chemistry
Cadinu P
(2018)
Double Barrel Nanopores as a New Tool for Controlling Single-Molecule Transport.
in Nano letters
Erofeev A
(2018)
Novel method for rapid toxicity screening of magnetic nanoparticles.
in Scientific reports
Wang X
(2019)
Single-molecule nanopore sensing of actin dynamics and drug binding.
in Chemical science
Gopal S
(2019)
Porous Silicon Nanoneedles Modulate Endocytosis to Deliver Biological Payloads.
in Advanced materials (Deerfield Beach, Fla.)
Zhang Y
(2019)
High-resolution label-free 3D mapping of extracellular pH of single living cells.
in Nature communications
Cai S
(2019)
Small molecule electro-optical binding assay using nanopores.
in Nature communications
| Description | There has been a significant drive to deliver nanotechnological solutions to biosensing, yet there remains an unmet need in the development of biosensors that are affordable, integrated, fast, capable of multiplexed detection, and offer high selectivity for trace analyte detection in biological fluids. Herein, some of these challenges are addressed by designing a new class of nanoscale sensors dubbed nanopore extended field-effect transistor (nexFET) that combine the advantages of nanopore single-molecule sensing, field-effect transistors, and recognition chemistry. We report on a polypyrrole functionalized nexFET, with controllable gate voltage that can be used to switch on/off, and slow down single-molecule DNA transport through a nanopore. This strategy enables higher molecular throughput, enhanced signal-to-noise, and even heightened selectivity via functionalization with an embedded receptor. This is shown for selective sensing of an anti-insulin antibody in the presence of its IgG isotype. |
| Exploitation Route | Novel nano sensors |
| Sectors | Healthcare Pharmaceuticals and Medical Biotechnology |
| Title | Nanopore extended field-effect transistor for selective single-molecule biosensing |
| Description | We designed a new class of nanoscale sensors dubbed nanopore extended field-effect transistor (nexFET) that combine the advantages of nanopore single-molecule sensing, field-effect transistors, and recognition chemistry. This strategy enables higher molecular throughput, enhanced signal-to-noise, and even heightened selectivity via functionalization with an embedded receptor. |
| Type Of Material | Biological samples |
| Year Produced | 2017 |
| Provided To Others? | Yes |
| Impact | not yet |
| Title | Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii |
| Description | Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 µmol photons/m**2/s the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://doi.pangaea.de/10.1594/PANGAEA.951332 |
