Shedding light on oxidative stress: Identifying factors modulating the redox balance in the endoplasmic reticulum of Caenorhabditis elegans.
Lead Research Organisation:
University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci
Abstract
Reactive oxygen species (ROS), oxidative stress and the reduction-oxidation (redox) balance play key roles in many different processes in living organisms. The importance of these are reflected in the number of diseases and conditions where they play a major role, including, inflammation (including arthritis), in cancer, heart disease and stroke, and in the ageing process. In addition to involvement in disease, redox and ROS play essential roles in key normal cellular functions. The cellular compartment where proteins are folded and assembled prior to secretion is called the endoplasmic reticulum (ER). A critical step in ER protein folding is the formation of disulphide bonds, an event that is highly sensitive to the redox environment. If the ER is too reducing then disulphides will not form yet if it is too oxidising then non-native forms become very stable leading to misfolding, an event that may lead to disease. Many of the factors involved in controlling this delicate balance to allow correct disulphide formation and to prevent oxidative stress in the ER remain to be identified. In this project we will combine our diverse but complementary expertise in genetics, biochemistry and cell biology to fully dissect how the redox balance is maintained in the ER of a small model organism called Caenorhabditis elegans. We have developed a strain of C. elegans that emits a specific light signal that is dependent on the redox environment in the ER and we propose to use this as an experimental tool to uncover the genes involved in redox balance in this organelle. These experiments will be used to inform and direct experiments in mammalian cells and will have a direct bearing on human cell biology, human disease states, ageing and the biotechnological production of proteins.
Technical Summary
The endoplasmic reticulum (ER) is the subcellular organelle where proteins destined for secretion are folded, modified and assembled prior to their secretion. This process includes the formation of disulphide bonds, an event that is highly sensitive to the redox balance. If the ER is too reducing then disulphides cannot efficiently form yet if it is too oxidising non-native disulphides are stabilised leading to misfolding. Numerous proteins are involved in maintaining the redox homeostasis in the ER to allow disulphide formation and to prevent oxidative stress in the organelle. This project combines expertise in genetics of a nematode model system as well as mammalian cell biology to fully dissect the key players contributing to maintaining the redox balance in the ER. The project will generate Caenorhabditis elegans mutants selecting for redox stress to identify proteins involved in preventing ER stress. In addition live organism imaging will be used to assess redox stress using a redox-sensitive variant of GFP (roGFP). The ultimate goal of this study is the use of the model nematode system to inform and direct experiments in mammalian cells.
Planned Impact
This project will, for the first time, allow the evaluation of the redox balance at the physiological whole-body context of a multicellular animal. Our approach will also allow detailed cell, tissue and organ level examination of redox. The collaboration will make a direct connection between work carried out in a model organism and studies carried out in mammalian systems. It is well established that C. elegans represents an excellent, genetically amenable animal model and work in this simple worm has led to the award of three separate Nobel prizes in the last decade. The development of sensitive GFP reporter molecules represented a major advance in cell biology that was recognized by the award of a joint Nobel Prize in 2008 for work on C. elegans. Likewise the development of calcium sensitive variants of GFP has allowed the direct monitoring of intracellular changes in live cells.
We are proposing to combine our expertise in genetics, cell biology and biochemistry by applying this model system to help understand important questions in human cell biology, namely the redox balance and protein folding process in the endoplasmic reticulum. Oxidative folding, isomerisation and reduction all occur in the ER and the fine control of this redox balance is critical since its disruption will lead to ER stress and ultimately protein misfolding and aggregation. In addition to playing a key role in the ageing process, ER stress can lead to a wide range of diseases such as diabetes, inflammation and several neurodegenerative disorders such as Alzheimer's and Parkinson's disease. The exact mechanism for the maintenance of redox balance in the ER remains a major unanswered question in cell biology.
We are proposing to combine our expertise in genetics, cell biology and biochemistry by applying this model system to help understand important questions in human cell biology, namely the redox balance and protein folding process in the endoplasmic reticulum. Oxidative folding, isomerisation and reduction all occur in the ER and the fine control of this redox balance is critical since its disruption will lead to ER stress and ultimately protein misfolding and aggregation. In addition to playing a key role in the ageing process, ER stress can lead to a wide range of diseases such as diabetes, inflammation and several neurodegenerative disorders such as Alzheimer's and Parkinson's disease. The exact mechanism for the maintenance of redox balance in the ER remains a major unanswered question in cell biology.
Organisations
Publications
Winter AD
(2022)
Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents.
in BMC biology
| Title | Additional file 1 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 1: Figure S1. B12 supplementation alleviates DTT toxicity in a mmcm-1 mutant but not metr-1 mutant. Embryos of (A-C) wild type (N2), (D-F) metr-1(ok521), (G-I) mmcm-1(ok1637), and (J-L) rips-1(ij109) were added to plates supplemented with 0 (top row) or 5 mM DTT (middle and bottom rows), in the presence (bottom row) or absence (top and middle rows) of 64 nM vitamin B12. Development to adult stage was assessed 4 days later and representative images are shown in panels (A-L). Scale bars denote 1 mm. The number of animals used in this experiment are as follows: (A) (n = 118), (B) (n = 136), (C) (n = 73); (D) (n = 197), (E) (n = 147), (F) (n = 197); (G) (n = 59), (H) (n = 93), (I) (n = 56); (J) (n = 109), (K) (n = 62), (L) (n = 94). (M) Plotted development to adult stage in percentage under the above treatments. p-values were determined from Fisher's exact test. NS not significant, *** p < 0.001. For all panels, purple significance marks indicate comparison of mutant worm strains to N2 wild type for each treatment group and blue significance marks indicate comparison of treatment groups (i.e., DTT or DTT+B12) to no DTT groups for each worm strain. Figure S2. DTT resistance mutants map to a single SAM methyltransferase gene. (A-B) HA mapping output from DTT resistance screen for (A) rips-1 allele ij109 (strain TP193) and (B) rips-1 allele ka14 (strain TP251). Clear peak visible on Chromosome V. (C) Protein sequence of RIPS-1 SAM methyltransferase highlighting location of mutation generated via EMS DTT resistance screen. Underlined residues exon/exon junctions and position and nature of mutation highlighted in colour and allele designation in brackets. Location of mutation relative to methyltransferase domain highlighted in cartoon (Pfam (PF13847) Methyltransf_31 residues 176-285; InterPro domain (IPR025714) Methyltranfer_dom residues 176-285. Figure S3. The loss of rips-1 causes DTT resistance phenotype. (A) High degree of identity between rips-1 (R08E5.3) and its closest homologue R08E5.1 that will account for potential RNAi cross-reaction. (B) N2 wild type [a], rips-1(ij109) mutant [TP193] [b], or wild type worms fed on E. coli expressing RNAi targeting rips-1 (R08E5.3) [c] or its homologues (R08E5.1 [d], R08F11.4 [e], or K12D9.1 [f]) was treated with 5 mM DTT for confirmation of causative gene for DTT resistance phenotype. Worms harbouring rips-1(ij109) allele or fed on rips-1 RNAi or R08E5.1 RNAi survived and reached adult stage on DTT while wild type (N2) or worms fed on R08F11.4 RNAi or K12D9.1 RNAi arrested development on DTT. Scale bars denote 1 mm. (C) The rips-1 paralogue R08E5.1 is induced by 5 mM DTT in wild type (N2) as shown via quantitative PCR. Red points with lines denote the mean and SEM. The level of R08E5.1 in wild type increases 4-fold upon exposure to 5 mM DTT (mean 4.527, Standard deviation 1.389). Figure S4. Media composition and bacterial food source do not influence DTT resistance of rips-1 mutant strain. (A-B) Counts for additional alleles of rips-1: (A) TP276 [rips-1(ka23)] and (B) TP251 [rips-1(ka14)]. Survival to adulthood after 4 days on 5 mM DTT treatment was compared to wild type N2. Red points with lines denote the mean and SEM. p-values were determined from Student's t-test. *** p < 0.001. Significance marks indicate comparison of rips-1 mutants to wild type. (C) rips-1(ij109) embryos were added onto (top row) animal-based peptone NGM or (bottom row) soy plant-based peptone NGM with either (half left) B12-poor E. coli strain OP50 or (half right) B12-rich E. coli strain HT115, with or without 5 mM DTT. Worms were then viewed as adults after 4 days at 22°C. All growth conditions resulted in development to healthy adult populations. Scale bars denote 1 mm. Figure S5. R08E5.3 is a methyltransferase conserved in diverse species. (A) Top BLAST hits from R08E5.3 amino acid sequence (Fig. S2C) as representative sequences: archaea [Nitrosopumilus maritimus, WP_012215840.1], mycobacterium [Mycobacterium mantenii, WP_083099804.1], bacterium [Desulfovibrio brasiliensis, WP_054652021.1], non-nematode multi-cellular eukaryote [Branchiostoma belcheri, XP_019632822.1], Caenorhabditis elegans rips-1 [NP_504045.1], non-Caenorhabditis nematode [Angiostrongylus cantonensis, KAE9416730.1], and fungi [Arthrobotrys oligospora, KAF3112035.1]. (B) Conservation of amino acids between rips-1 and its orthologues: rips-1 [NP_504045.1], R08E5.1 [NP_504044.3], R08F11.4 [NP_504052.1] and K12D9.1 [NP_503823.2]. In (A-B), conserved mutations found in rips-1 DDT resistance mutants are shown in red above the alignments. (C) Genomic location and genes surrounding rips-1 (R08E5.3). Figure S6. RIPS-1::GFP reporter transgene shows subcellular induction following 5 mM DTT exposure. RIPS-1::GFP transgenic strain (A-C) TP313 and (D-F) TP315 show (A, D) weak gut induction in the absence of DTT (white asterisk in (A) denotes the transgenic pharyngeal marker), but (B-C, E-F) strong induction in gut (arrowed) and the hypodermis (arrowhead) following 5 mM DTT exposure. Scale bars denote 0.1 mm. Figure S7. RIPS-1::GFP reporter is induced by DTT in the presence of heat-killed OP50 and in the complete absence of bacteria. Transgenic RIPS-1::GFP (TP313) nematodes were picked to unseeded plates for 1 hour then transferred to plates in the (A) absence or (B-C) presence of 5 mM DTT, with no bacteria (A-B) or (C) heat-killed bacteria (60°C for 30 min), and grown for 24 hours. Insets represent bright field image. Scale bars denote 0.5 mm. (D) GFP quantification of (A-C). Red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Tukey's test. *** p < 0.001. Significance marks indicate comparison of DTT-treated groups to untreated control. Figure S8. RNAi of hypoxia pathway genes induce RIPS-1::GFP reporter expression in TP315. An independent RIPS-1::GFP reporter strain (TP315) was used to carry out the same experiment depicted in Fig. 5. RIPS-1::GFP reporter strain was reared on E. coli expressing (A) Control (L4440) RNAi, (B) rhy-1 RNAi, (C) egl-9 RNAi, (D) vhl-1 RNAi, (E) mxl-3 RNAi, or (F) clk-1 RNAi. Knockdowns of rhy-1 and egl-9 induce RIPS-1::GFP expression in the gut and hypodermis, vhl-1 RNAi induces RIPS-1::GFP expression only in the gut, while control, mxl-3, and clk-1 RNAi do not cause any induction. Insets represent bright field image. Scale bars denote 0.5 mm. (G) Quantification of RIPS-1::GFP expression in panels (A-F). Red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Dunnett's test. *** p < 0.001. Significance marks indicate comparison of DTT-treated groups to untreated control. Figure S9. Hypoxia induction factor HIF-1 controls RIPS-1 activation on DTT exposure. An independent RIPS-1::GFP reporter strain (TP315) was used to carry out the same experiment depicted in Fig. 5. (A-B) Control, (C-D) hif-1, and (E-F) vhl-1 RNAi feeding were carried out on RIPS-1::GFP reporter strain for 3 days. L4 animals with positive myo-2 transgenic marker (red pharynx) were then picked onto the corresponding RNAi plates that (B, D, F) were supplemented with 5 mM DTT or (A, C, E) with no DTT for 24 hours prior to imaging. (A-B) Worms reared on control RNAi only showed strong RIPS-1::GFP induction upon treatment with 5 mM DTT, while (C) hif-1 RNAi alone or (D) followed by 5 mM DTT treatment failed to induce RIPS-1::GFP. (E-F) RNAi of vhl-1 induced RIPS-1::GFP expression in the gut tissues that persisted following DTT exposure. Insets represent bright field image. Scale bars denote 0.5 mm. Quantification of GFP signals for panels (A-F) is depicted in (G), where red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Tukey's post-hoc test. NS not significant, * p < 0.05, *** p < 0.001. In panel (G), blue significance marks indicate comparison of groups treated with 5 mM DTT to untreated control, black and red significance marks indicate comparison of RNAi groups to control (L4440) RNAi groups within no DTT or DTT-treated conditions, respectively. |
| Type Of Art | Film/Video/Animation |
| Year Produced | 2022 |
| URL | https://springernature.figshare.com/articles/presentation/Additional_file_1_of_Dietary-derived_vitam... |
| Title | Additional file 1 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 1: Figure S1. B12 supplementation alleviates DTT toxicity in a mmcm-1 mutant but not metr-1 mutant. Embryos of (A-C) wild type (N2), (D-F) metr-1(ok521), (G-I) mmcm-1(ok1637), and (J-L) rips-1(ij109) were added to plates supplemented with 0 (top row) or 5 mM DTT (middle and bottom rows), in the presence (bottom row) or absence (top and middle rows) of 64 nM vitamin B12. Development to adult stage was assessed 4 days later and representative images are shown in panels (A-L). Scale bars denote 1 mm. The number of animals used in this experiment are as follows: (A) (n = 118), (B) (n = 136), (C) (n = 73); (D) (n = 197), (E) (n = 147), (F) (n = 197); (G) (n = 59), (H) (n = 93), (I) (n = 56); (J) (n = 109), (K) (n = 62), (L) (n = 94). (M) Plotted development to adult stage in percentage under the above treatments. p-values were determined from Fisher's exact test. NS not significant, *** p < 0.001. For all panels, purple significance marks indicate comparison of mutant worm strains to N2 wild type for each treatment group and blue significance marks indicate comparison of treatment groups (i.e., DTT or DTT+B12) to no DTT groups for each worm strain. Figure S2. DTT resistance mutants map to a single SAM methyltransferase gene. (A-B) HA mapping output from DTT resistance screen for (A) rips-1 allele ij109 (strain TP193) and (B) rips-1 allele ka14 (strain TP251). Clear peak visible on Chromosome V. (C) Protein sequence of RIPS-1 SAM methyltransferase highlighting location of mutation generated via EMS DTT resistance screen. Underlined residues exon/exon junctions and position and nature of mutation highlighted in colour and allele designation in brackets. Location of mutation relative to methyltransferase domain highlighted in cartoon (Pfam (PF13847) Methyltransf_31 residues 176-285; InterPro domain (IPR025714) Methyltranfer_dom residues 176-285. Figure S3. The loss of rips-1 causes DTT resistance phenotype. (A) High degree of identity between rips-1 (R08E5.3) and its closest homologue R08E5.1 that will account for potential RNAi cross-reaction. (B) N2 wild type [a], rips-1(ij109) mutant [TP193] [b], or wild type worms fed on E. coli expressing RNAi targeting rips-1 (R08E5.3) [c] or its homologues (R08E5.1 [d], R08F11.4 [e], or K12D9.1 [f]) was treated with 5 mM DTT for confirmation of causative gene for DTT resistance phenotype. Worms harbouring rips-1(ij109) allele or fed on rips-1 RNAi or R08E5.1 RNAi survived and reached adult stage on DTT while wild type (N2) or worms fed on R08F11.4 RNAi or K12D9.1 RNAi arrested development on DTT. Scale bars denote 1 mm. (C) The rips-1 paralogue R08E5.1 is induced by 5 mM DTT in wild type (N2) as shown via quantitative PCR. Red points with lines denote the mean and SEM. The level of R08E5.1 in wild type increases 4-fold upon exposure to 5 mM DTT (mean 4.527, Standard deviation 1.389). Figure S4. Media composition and bacterial food source do not influence DTT resistance of rips-1 mutant strain. (A-B) Counts for additional alleles of rips-1: (A) TP276 [rips-1(ka23)] and (B) TP251 [rips-1(ka14)]. Survival to adulthood after 4 days on 5 mM DTT treatment was compared to wild type N2. Red points with lines denote the mean and SEM. p-values were determined from Student's t-test. *** p < 0.001. Significance marks indicate comparison of rips-1 mutants to wild type. (C) rips-1(ij109) embryos were added onto (top row) animal-based peptone NGM or (bottom row) soy plant-based peptone NGM with either (half left) B12-poor E. coli strain OP50 or (half right) B12-rich E. coli strain HT115, with or without 5 mM DTT. Worms were then viewed as adults after 4 days at 22°C. All growth conditions resulted in development to healthy adult populations. Scale bars denote 1 mm. Figure S5. R08E5.3 is a methyltransferase conserved in diverse species. (A) Top BLAST hits from R08E5.3 amino acid sequence (Fig. S2C) as representative sequences: archaea [Nitrosopumilus maritimus, WP_012215840.1], mycobacterium [Mycobacterium mantenii, WP_083099804.1], bacterium [Desulfovibrio brasiliensis, WP_054652021.1], non-nematode multi-cellular eukaryote [Branchiostoma belcheri, XP_019632822.1], Caenorhabditis elegans rips-1 [NP_504045.1], non-Caenorhabditis nematode [Angiostrongylus cantonensis, KAE9416730.1], and fungi [Arthrobotrys oligospora, KAF3112035.1]. (B) Conservation of amino acids between rips-1 and its orthologues: rips-1 [NP_504045.1], R08E5.1 [NP_504044.3], R08F11.4 [NP_504052.1] and K12D9.1 [NP_503823.2]. In (A-B), conserved mutations found in rips-1 DDT resistance mutants are shown in red above the alignments. (C) Genomic location and genes surrounding rips-1 (R08E5.3). Figure S6. RIPS-1::GFP reporter transgene shows subcellular induction following 5 mM DTT exposure. RIPS-1::GFP transgenic strain (A-C) TP313 and (D-F) TP315 show (A, D) weak gut induction in the absence of DTT (white asterisk in (A) denotes the transgenic pharyngeal marker), but (B-C, E-F) strong induction in gut (arrowed) and the hypodermis (arrowhead) following 5 mM DTT exposure. Scale bars denote 0.1 mm. Figure S7. RIPS-1::GFP reporter is induced by DTT in the presence of heat-killed OP50 and in the complete absence of bacteria. Transgenic RIPS-1::GFP (TP313) nematodes were picked to unseeded plates for 1 hour then transferred to plates in the (A) absence or (B-C) presence of 5 mM DTT, with no bacteria (A-B) or (C) heat-killed bacteria (60°C for 30 min), and grown for 24 hours. Insets represent bright field image. Scale bars denote 0.5 mm. (D) GFP quantification of (A-C). Red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Tukey's test. *** p < 0.001. Significance marks indicate comparison of DTT-treated groups to untreated control. Figure S8. RNAi of hypoxia pathway genes induce RIPS-1::GFP reporter expression in TP315. An independent RIPS-1::GFP reporter strain (TP315) was used to carry out the same experiment depicted in Fig. 5. RIPS-1::GFP reporter strain was reared on E. coli expressing (A) Control (L4440) RNAi, (B) rhy-1 RNAi, (C) egl-9 RNAi, (D) vhl-1 RNAi, (E) mxl-3 RNAi, or (F) clk-1 RNAi. Knockdowns of rhy-1 and egl-9 induce RIPS-1::GFP expression in the gut and hypodermis, vhl-1 RNAi induces RIPS-1::GFP expression only in the gut, while control, mxl-3, and clk-1 RNAi do not cause any induction. Insets represent bright field image. Scale bars denote 0.5 mm. (G) Quantification of RIPS-1::GFP expression in panels (A-F). Red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Dunnett's test. *** p < 0.001. Significance marks indicate comparison of DTT-treated groups to untreated control. Figure S9. Hypoxia induction factor HIF-1 controls RIPS-1 activation on DTT exposure. An independent RIPS-1::GFP reporter strain (TP315) was used to carry out the same experiment depicted in Fig. 5. (A-B) Control, (C-D) hif-1, and (E-F) vhl-1 RNAi feeding were carried out on RIPS-1::GFP reporter strain for 3 days. L4 animals with positive myo-2 transgenic marker (red pharynx) were then picked onto the corresponding RNAi plates that (B, D, F) were supplemented with 5 mM DTT or (A, C, E) with no DTT for 24 hours prior to imaging. (A-B) Worms reared on control RNAi only showed strong RIPS-1::GFP induction upon treatment with 5 mM DTT, while (C) hif-1 RNAi alone or (D) followed by 5 mM DTT treatment failed to induce RIPS-1::GFP. (E-F) RNAi of vhl-1 induced RIPS-1::GFP expression in the gut tissues that persisted following DTT exposure. Insets represent bright field image. Scale bars denote 0.5 mm. Quantification of GFP signals for panels (A-F) is depicted in (G), where red points with lines denote the mean and SEM. p-values were determined from one-way ANOVA, followed by Tukey's post-hoc test. NS not significant, * p < 0.05, *** p < 0.001. In panel (G), blue significance marks indicate comparison of groups treated with 5 mM DTT to untreated control, black and red significance marks indicate comparison of RNAi groups to control (L4440) RNAi groups within no DTT or DTT-treated conditions, respectively. |
| Type Of Art | Film/Video/Animation |
| Year Produced | 2022 |
| URL | https://springernature.figshare.com/articles/presentation/Additional_file_1_of_Dietary-derived_vitam... |
| Description | Proteins destined for the secretory pathway and cell surface are folded in the endoplasmic reticulum (ER). Classes of biologically important proteins that transit the ER, known as ER client proteins, include receptors, antibodies, and extra-cellular matrix components. ER client proteins enter in an unfolded state and leave only when correctly folded and assembled. This process is dependent on a set of ER-resident proteins that catalyze specific folding steps and prevent aggregation. A particular feature of proteins folded in the ER is the presence of disulphide bonds which are formed by covalent linkage of cysteine residues. The stability and function of many secreted and cell surface proteins depends on native disulphide formation which in turn relies on fine control of the balance between oxidation (favouring disulphide formation) and reduction. The protein folding capacity of the ER is therefore highly sensitive to the redox environment of this organelle. DIsruption of this balance has been implicated in numerous disease states and aging. To identify novel factors regulating redox balance and protein folding in the ER we have expressed an ER-localised redox-sensitive version of GFP in C. elegans that enables changes to ER redox to be analysed in vivo. The sensor responds to changes in ER redox induced by compounds and by RNAi, as determined by Western blotting and with live worm populations using a plate reader and we are applying this sensor to identify novel genes required for ER redox homeostasis. In addition, we have carried out genetic screens for mutants that are resistant to highly reducing conditions using dithiothreitol (DTT) selection. This approach has identified 13 strains that are capable of withstanding extreme reducing conditions and whole genome sequencing reavles that all 13 encode a single novel s-adenosyl methyl transferase that we are currently characterizing. Lastly, we are examining the C. elegans quiescin sulfhydryl oxidase family to reveal the role and substrates for these poorly understood secretory pathway enzymes. |
| Exploitation Route | Findings from our genetic analysis of C. elegans, such as the identification of the reduction resistant methyl transferase will be extended by testing in mammalian cell systems. |
| Sectors | Education Healthcare Pharmaceuticals and Medical Biotechnology |
| Title | Redox sensitive endoplasmic reticulum markers (roGFP) |
| Description | In this project we developed transgenic Caenorhabditis elegans lines that express GFP sensors that change excitation ratios dependant on the Oxidation Reduction status of the endoplasmic reticulum (ER). These are invaluable tool in understanding the REDOX status of a multicellualr animal and will be useful in determining the nature of genes that disrupt or shift this balance. This has direct relevance to protein folding and secretion in metazoan organisms. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2016 |
| Provided To Others? | No |
| Impact | To be published and still to be developed fully |
| Title | Additional file 3 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 3. Detailed BLAST analysis of RIPS-1. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Dietary-derived_vitamin_B1... |
| Title | Additional file 3 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 3. Detailed BLAST analysis of RIPS-1. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Dietary-derived_vitamin_B1... |
| Title | Additional file 4 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 4. Raw data for Figs. 2o, 3a, b, c, d, f, 4a, b, d, 5o, p, q, 6s, t, u, and Additional file 1: Figs. S1M, S3, S4A-B, S7, S8, and S9. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Dietary-derived_vitamin_B1... |
| Title | Additional file 4 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 4. Raw data for Figs. 2o, 3a, b, c, d, f, 4a, b, d, 5o, p, q, 6s, t, u, and Additional file 1: Figs. S1M, S3, S4A-B, S7, S8, and S9. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Dietary-derived_vitamin_B1... |
| Title | Additional file 5 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 5. Statistical analysis results for Figs. 2o, 3a, b, c, d, f, 4a, b, d, 5o, p, q, 6s, t, u, and Additional file 1: Figs. S1M, S4A-B, S7, S8, and S9. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_5_of_Dietary-derived_vitamin_B1... |
| Title | Additional file 5 of Dietary-derived vitamin B12 protects Caenorhabditis elegans from thiol-reducing agents |
| Description | Additional file 5. Statistical analysis results for Figs. 2o, 3a, b, c, d, f, 4a, b, d, 5o, p, q, 6s, t, u, and Additional file 1: Figs. S1M, S4A-B, S7, S8, and S9. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://springernature.figshare.com/articles/dataset/Additional_file_5_of_Dietary-derived_vitamin_B1... |