High-resolution imaging of the electric surface potential of biomolecular structures

Lead Research Organisation: University College London
Department Name: Chemistry


Microscopical techniques are important tools in biology ever since the 17th century, when Anton van Leeuwenhoek observed biological cells for the first time using a handcrafted, optical microscope. Since then microscopy has evolved substantially, from simple optical lens microscopes to microscopes that use physical mechanisms other than light, such as electron beams or mechanical scanning-probes. In scanning-probe microscopy a tiny, microfabricated tip, which is much smaller than a biological cell, is scanned over a surface of an object while closely following its surface contours. Computer analysis then provides a three-dimensional image of the surface of the object, which can be a cell, but also protein or DNA molecules. Unlike electron microscopy, scanning-probe microscopy has the great advantage to work in air as well as in water, the natural environment of most living cells, and the sample does not need to be coated with a metal. In recent years, a variant of scanning-probe microscopy, termed Kelvin-probe Force Microscopy has been developed by materials and semiconductor scientists. This novel method can image not only the roughness and structure of surfaces but also their electrical properties, which provides important, additional clues about the composition of materials and the location of charged molecules at high resolution. The method does not need any chemical or physical modification of the sample prior to investigation and it is extremely sensitive. This technology-driven research project, which is located at the interface of biological and physical sciences, aims to adapt Kelvin-probe Force Microscopy for use in biology. So far, Kelvin-probe Force Microscopy works only in air or vacuum whereas most biological samples need to be investigated when immersed in water. Our objective is to develop new instrumentation to enable us to perform Kelvin-probe Force Microscopy measurements at high resolution in water. This will encompass the design and fabrication of new microscope tips as well as technical modifications of commercially available instruments. To evaluate whether Kelvin-probe Force Microscopy can operate and image at high resolution in water, we will create two-dimensional patterns of electrical charges with defined and regular geometry. These model structures will be obtained using naturally occurring proteins which have the ability to self-assemble into large crystalline sheets with repeating features. We will introduce regular charges into these protein sheets via genetic-engineering of the protein. We believe that the successful expansion of Kelvin-probe Force Microscopy to measurements in water will open new routes for research in biology, where surface charges play an important role. Examples are the visualisation of ion-channels, charged molecules embedded in cell membranes or entire cell membrane domains in living cells. This instrumentation will be of great benefit to biologists, biomedical scientists and biophysicists who will be able to obtain a spatial image of the electrostatic surface potential under physiological conditions, and could possibly lead to commercialisation of new research instruments by scanning-probe instrument manufacturers.

Technical Summary

This project has two aims: Firstly, to develop a method forhigh-resolution, quantitative mapping of the surface potential of biomolecular structures in water and, secondly, to create 2D-protein structures with periodic charge patterns to demonstrate and evaluate the method. The project is based on Kelvin-probe Force Microscopy (KFM), in which a biased, conductive, standard Atomic Force Microscope (AFM) tip is scanned close to a sample surface resulting in a very sensitive, quantitative measurement of the surface potential with a lateral resolution of about 50 nm. To date, the method is restricted to measurements in air or vacuum, which is mainly due to the design of commercial AFM-tips. However, as KFM is a currentless technique the method could also be applied in conductive liquids such as water. Our goal is to expand KFM to aqueous solutions and increase its resolution. This will be achieved by modifying AFM-tips with an electrical insulation to prevent current leakage through the water. Furthermore, we will fabricate sharper tips to improve the spatial resolution to below 10 nm. We will produce model samples with patterned charges to demonstrate and evaluate the method. Structures displaying charge patterns with sub-10-nm features will be obtained by assembling S-layer proteins into 2D crystalline sheets. Using protein-engineering, charged amino acids will be inserted into surface-accessible loops of an S-layer protein. The resulting charge patterns will include checkerboard-type and line patterns of both polarities. With suitable amino acid inserts, it will be possible to neutralise or reverse the charges by using small pH changes without disrupting the protein structures. The successful expansion of KFM to water will open up entirely new routes for research into biological systems where surface charges play an important role, such as in ion channels, charged membrane proteins, lipid rafts or the charge-influenced aggregation of proteins into amyloid fibrils.


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Description In addition to the publications, two patents have been filed. MEMBRANE-SPANNING NANOPORES, PCT/GB2017/052089. The license taker is Oxford Nanopore Technologies. A second patent has been filed and licensed by Oxford Nanopore Technologies. The patent is entitled: Membrane Bound Nucleic Acid Nanopores, PATENT APPLICATION NUMBER 1812615.1
Exploitation Route The results can be used to generate new pores in biosensing and controlled release of drugs.
Sectors Agriculture, Food and Drink,Pharmaceuticals and Medical Biotechnology

Description The finding has led to an improved understanding of how to characterise surfaces of biomedical important, and is currently used in undergraduate lectures and training courses as example of advanced surface analysis.
First Year Of Impact 2013
Sector Education
Impact Types Societal,Economic

Description Deterministic measure of Biomolecular Self-Assembly, co-lead with Prof Gary Lye
Amount £780,000 (GBP)
Organisation National Physical Laboratory 
Sector Academic/University
Country United Kingdom
Start 10/2013 
End 09/2017
Description Nanopores built from DNA: Nanometrological characterisation and biotechnological exploitation
Amount £28,129 (GBP)
Organisation National Physical Laboratory 
Sector Academic/University
Country United Kingdom
Start 10/2013 
End 04/2014