Evaluation and further development of small molecule probes to study the role of prion protein in the ageing and renewal of stem cells

Lead Research Organisation: University of Sheffield
Department Name: Chemistry

Abstract

Stem cells are particular types of cells that have unique power in regenerating themselves (self-renewal) and developing into other cell types capable of carrying out special tasks in the body. Therefore, stem cells have the potential to change the face of disease treatment by being used to repair specific tissues or to grow organs as regenerative or reparative medicine. However, stem cell research has been at the center of debate for because the majority of current research involves the use of embryonic stem cells. Embryonic stem (ES) cells used in the research are from early stage human embryos. The destruction of a human embryo is usually required in order to start a stem cell 'line'. This poses great ethical concerns and the work in this field has to be vigorously regulated. Although these cells are easy to grow in the laboratory; technical hurdles such as the availability of embryos, methods for producing particular types of tissues and organs from ES cells for intended medical use and the possibility of their rejection by the recipient because they are from different donors, further complicate the research. An alternative to ES cells is the use of adult stem cells. They can be found in the different tissues of the body, undergo self-renewal and can develop into other cell types. They have an advantage that they can be obtained from the patient's own tissue, therefore avoiding the ethical issues and problem of rejection by the immune system. Some type of adult stem cells such as haemopoietic stem (HS) cells, are already being used routinely in bone marrow transplantations. However they exist in very small numbers and this number decreases with the age of the donor. In addition, attempts to isolate and grow most adult stem cells in the laboratory have failed because they age rapidly and the ability of developing into different tissues is lost outside living environments. Therefore the main technical challenges for scientists working in this field lie in isolating them from many other cells, being able to keep them growing and reproducing without aging and maintaining their ability of development in the laboratory. The use of adult stem cells in regenerative medicine can take off rapidly once these problems are overcome. Recent studies have shown that prion proteins, which are connected with a family of deadly neurodegenerative diseases called transmissible spongiform encephalopathies (TSEs) or prion diseases (such as scrapie in goats and sheep, mad cow disease in cattle and vCJD in human) are also present in abundance on the surface of stem cells. It has been shown that in HS cells they help the renewal of these cells. This proposal aims to tackle the problem of aging and renewal in stem cell research. This will be achieved by probing the function of cellular prion protein (PrPC) on the surface of embryonal carcinoma(EC), embryonic stem (ES) cells, and adult mesenchymal stem (MS) cells, using optimised small molecule binders. EC cells will be used in initial high throughput screening to see the effects of 224 binders discovered in the applicants' group on the growth of the stem cells in general, followed by confirmation using ES cells. The active binders will then be further optimised to give rise to some high affinity binders and selected binders will be studied for their ageing and renewal in MS cells, which can potentially differentiate into bones and cartilage to be used as regenerative medicines.

Technical Summary

Stem cells can divide and renew themselves (self-renewal) whilst retaining the ability to differentiate into other cell types. Therefore, they have the potential to change the face of disease treatment by being used to repair specific tissues or to grow organs as regenerative or reparative medicine. Much research has been devoted to the study of adult stem cells as regenerative medicines as they can be obtained from the patient's own tissue, avoiding the ethical issues and problem of rejection by the immune system. However they exist in very small numbers and this number decreases with the age of the donor. Isolating them, keeping them renewing without aging in culture and retaining their differentiation ability remain a key technical challenge. Cellular prion proteins (PrPC) have been the subject of many intensive studies over more than a decade due to their connections with a family of deadly neurodegenerative diseases called transmissible spongiform encephalopathies (TSEs). Recently, it has been found that PrPC is expressed on haemopoietic stem (HS) cells and to have a role in their self-renewal. It is also suggested that PrPC may be involved in prevention of cellular ageing by preventing accumulation of defective mitochondria. This proposal aims to tackle the problem of aging and renewal in stem cell research. This will be achieved by probing the PrPC on the surface of embryonic carcinoma (EC), embryonic stem (ES) cells and mesenchymal stem(MS) cells using optimised small molecule binders. EC cells will be used in initial high throughput screening to see the effects of 224 binders discovered in the applicants' group on the growth of the stem cells in general followed by confirmation using ES cells. The initial binders will be further optimised to give rise to some high affinity binders and selected binders will be studied for their ageing and renewal in MS cells.

Publications

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Abdo A (2010) Ligand-based virtual screening using Bayesian networks. in Journal of chemical information and modeling

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Thompson MJ (2009) Development of a diversity-oriented approach to oxazole-5-amide libraries. in The Journal of organic chemistry

 
Description Cellular protein, PrPC, is required to keep bone marrow MSC in proliferating state and small molecule indole compound, 689, can enhance the proliferation of MSC, more profound when they are in aged state via regulating the SOD2 activities. The MSC cultured in the presence of 689 can increase the bone mass and quality in Osteophorisis mice model.
Exploitation Route The findings were published and cited by others working in the field. They were also taken forward by the applicants as bases in the further grant applications.
Sectors Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description The findings have been used by applicants and others for further research and funding applications.
First Year Of Impact 2010
Sector Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology
Impact Types Societal

 
Description EPSRC Theme Day
Geographic Reach National 
Policy Influence Type Contribution to a national consultation/review
Impact The recommendation of the theme day reshaped the RU policy and priority on healthcare, especially in regenerative medicine field.
 
Description Assessment of the Fanconi Anaemia pathway and its inhibition in Glioblatoma Multiforme
Amount £66,000 (GBP)
Organisation Weston Park Hospital 
Department Weston Park Hospital Cancer Charity
Sector Charity/Non Profit
Country United Kingdom
Start 01/2013 
End 12/2013
 
Description Assessment of the Fanconi Anaemia pathway and its inhibition in Glioblatoma Multiforme
Amount £153,000 (GBP)
Organisation Yorkshire Cancer Research 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2014 
End 12/2016
 
Description De Novo Design Tool
Amount £120,576 (GBP)
Organisation Cambridge Crystallographic Data Centre 
Sector Academic/University
Country United Kingdom
Start 10/2009 
End 09/2011
 
Description Design and Synthesis of Pharmaceutically Relevant Chemical Entities
Amount £192,000 (GBP)
Funding ID 007548 
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 09/2010 
End 09/2013
 
Description Design and Synthesis of Pharmaceutically Relevant Chemical Entities
Amount £191,696 (GBP)
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 09/2010 
End 08/2013
 
Description Development of novel antibiotics against anthrax based upon currently recommended drugs ciprofloxacin and other existing drugs using chimeric approaches
Amount £568,000 (GBP)
Funding ID HO/0407270 
Organisation Government of the UK 
Sector Public
Country United Kingdom
Start 06/2008 
End 05/2011
 
Description Diagnostic and Drug Discovery Initiative for Alzheimer's Disease (D3i4AD)
Amount € 2,209,000 (EUR)
Funding ID 612347 
Organisation European Commission 
Department Seventh Framework Programme (FP7)
Sector Public
Country European Union (EU)
Start 10/2014 
End 09/2018
 
Description Optimisation And Further Biological Evaluation Of Novel Broad Spectrum Antibiotics
Amount £101,000 (GBP)
Organisation Government of Catalonia 
Department Department of Health
Sector Public
Country Spain
Start 10/2011 
End 03/2013
 
Description Stem Cell, Prion Protein, and Azlheimer's Disease: A Prion Chemical Biology Network (PCBNet)
Amount £224,055 (GBP)
Funding ID EP/I037296/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 05/2011 
End 08/2013
 
Title SMB cell line 
Description It was made available to research groups interested. 
Type Of Material Biological samples 
Year Produced 2011 
Provided To Others? Yes  
Impact It provides a tool to assess the antiprion activity of compounds. 
 
Title Small molecule chemical probes 
Description Small molecules that can enhance the proliferation of stem cells 
Type Of Material Technology assay or reagent 
Year Produced 2011 
Provided To Others? Yes  
Impact The compounds are available to research community interested 
 
Title Chemical compound library 
Description It contains chemical compounds synthesised in my group. 
Type Of Material Database/Collection of data 
Year Produced 2010 
Provided To Others? Yes  
Impact It has potential to be developed as novel therapeutics. 
 
Description Assessment of DMPK properties of small molecule antiprion compounds in mice models 
Organisation University of California, San Francisco
Country United States 
Sector Academic/University 
PI Contribution Preparation of small molecule antiprion compounds
Collaborator Contribution Assessment of DMPK properties of small molecule antiprion compounds in mice models
Impact Results to be published
Start Year 2013
 
Description Investigate the role of prion protein in Alzheimner's disease 
Organisation Eli Lilly & Company Ltd
Country United Kingdom 
Sector Private 
PI Contribution know-how and 12 years experience in prion research field
Collaborator Contribution Strong track record in drug discovery in commercial sector
Impact successful studentship and EU grants
Start Year 2013
 
Description Test and validation of the role of prion protein in Alzheimer's disease models 
Organisation Amorfix Life Sciences Ltd
Country Canada 
Sector Private 
PI Contribution Design the epitope of antibody for Abeta amyloid protein
Collaborator Contribution Production of anti Abeta amyloid antibody
Impact A successful application of EU project
Start Year 2011
 
Description small molecules that influence Prnp expression and differentiation potential of canine BM-MSCs 
Organisation Utrecht University
Department Faculty of Veterinary Medicine
Country Netherlands 
Sector Hospitals 
PI Contribution Proof of concept validation of small molecules that influence Prnp expression and differentiation potential of canine BM-MSCs.
Collaborator Contribution Test the small molecules in canine BM-MSCs.
Impact Results to be published.
Start Year 2014
 
Title INDOLE DERIVATIVES FOR THE STIMULATION OF STEM CELL PROLIFERATION 
Description The present invention relates to indole derivatives of formula (I) and Formula (II) which possess potent antiprion activity and stem cell proliferative properties. The invention also relates to the use of such compounds to treat prion-related diseases and in stem cell therapies. 
IP Reference WO2010139982 
Protection Patent granted
Year Protection Granted 2010
Licensed No
Impact Novel indole compounds as regenerative medicine.
 
Title THIAZOLE AND OXAZOLE DERIVATIVES FOR USE IN THE TREATMENT OF PRION DISEASES, CANCER AND CONDITIONS OF THE CENTRAL NERVOUS SYSTEM AS WELL AS IN THE REGULATION OF STEM CELLS 
Description Compounds of the formula (I) are provided: Fomula (I) wherein X, Y, R1, R2 and R3 are as defined in the specification. The compounds may be useful in the treatment of various diseases and conditions, in particular prion diseases. 
IP Reference WO2008090382 
Protection Patent granted
Year Protection Granted 2008
Licensed No
Impact Novel antiprion therapeutics.
 
Description 8th International Symposium for Chinese Medicinal Chemists 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact International conference.
Year(s) Of Engagement Activity 2012
 
Description 9th IUPAC International Symposium on Biomolecular Chemistry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact International conference.
Year(s) Of Engagement Activity 2012
 
Description Prion 2012 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Raise public awareness and share scientific information.
Year(s) Of Engagement Activity 2012
 
Description Royal Society of Chemistry Biological and Medicinal Chemistry Sector (BMCS) 2nd RSC Symposium on Chemical Biology for Drug Discovery 20th -21st of March 2012 AstraZeneca, Alderley Park, Macclesfield, UK 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Raise public awareness in stem cell, the role of prion protein and regenerative medicine.
Year(s) Of Engagement Activity 2012
 
Description prion 2013 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Raise public awareness and share scientific information
Year(s) Of Engagement Activity 2013
 
Description prion chemical biology article 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Raise public awareness
Year(s) Of Engagement Activity 2015