Mapping the interaction of Hsp90 with a new class of client protein: Sgt1-dependent recruitment of a kinetochore protein to Hsp90
Lead Research Organisation:
Birkbeck, University of London
Department Name: Biological Sciences
Abstract
The function of a protein is determined to a large extent by its structure. The correct structure or 'fold' of a protein is therefore essential for that protein to carry out the specific activity for which it evolved. Misfolded proteins often become inactive or are hyperactive, and are frequently the cause of disease.
For many proteins the ability to form the correct fold is something that is innate, that is, it is encoded within the amino acids that make up the protein itself. However some proteins cannot spontaneously fold and require the help of other proteins known as chaperones. These chaperones accompany or guide the protein to the correct fold so the protein can function properly. Chaperones are therefore essential for all living cells.
We aim to understand how one such molecular chaperone, called Hsp90, helps proteins to achieve the correct fold. We are particularly interested in this chaperone since many proteins that require Hsp90 for their final structure are involved in diseases, including cancer. The results from this work can therefore be used to develop new drugs that prevent these diseases.
We have focused on one protein, called Ctf13 that is involved in cell division. Cell division is the process by which cells replicate, for example to replace cells that are lost through wear and tear, to generate new cells with different functions (for example during the growth and development of a foetus) or during the growth of a tumour in cancer.
Two other proteins are required in addition to Hsp90, to allow Ctf13 to fold properly: a helper-protein called Sgt1, which Hsp90 needs to recognize Ctf13, and a bridging protein called Skp1, that bridges the interaction between the helper protein and Ctf13. In order for Ctf13 to attain the correct structure all four proteins must interact simultaneously with each other in a multi-protein complex.
The aim of this project is to determine the structure of the complex formed by these proteins. We will do this in several steps. Initially we will determine the atomic structure of the complex formed by the helper-protein and the bridging-protein alone. We will then add the remaining components to form the complete complex, and determine the structure of this using a technique that allows direct visualization of the proteins in a microscope using a beam of electrons instead of a beam of light.
Analysis of these structures will allow us to understand more about how Hsp90 interacts with these proteins, and this information can be used to develop new drugs that inhibit Hsp90 function, preventing Hsp90 from 'chaperoning' proteins that are involved in disease.
For many proteins the ability to form the correct fold is something that is innate, that is, it is encoded within the amino acids that make up the protein itself. However some proteins cannot spontaneously fold and require the help of other proteins known as chaperones. These chaperones accompany or guide the protein to the correct fold so the protein can function properly. Chaperones are therefore essential for all living cells.
We aim to understand how one such molecular chaperone, called Hsp90, helps proteins to achieve the correct fold. We are particularly interested in this chaperone since many proteins that require Hsp90 for their final structure are involved in diseases, including cancer. The results from this work can therefore be used to develop new drugs that prevent these diseases.
We have focused on one protein, called Ctf13 that is involved in cell division. Cell division is the process by which cells replicate, for example to replace cells that are lost through wear and tear, to generate new cells with different functions (for example during the growth and development of a foetus) or during the growth of a tumour in cancer.
Two other proteins are required in addition to Hsp90, to allow Ctf13 to fold properly: a helper-protein called Sgt1, which Hsp90 needs to recognize Ctf13, and a bridging protein called Skp1, that bridges the interaction between the helper protein and Ctf13. In order for Ctf13 to attain the correct structure all four proteins must interact simultaneously with each other in a multi-protein complex.
The aim of this project is to determine the structure of the complex formed by these proteins. We will do this in several steps. Initially we will determine the atomic structure of the complex formed by the helper-protein and the bridging-protein alone. We will then add the remaining components to form the complete complex, and determine the structure of this using a technique that allows direct visualization of the proteins in a microscope using a beam of electrons instead of a beam of light.
Analysis of these structures will allow us to understand more about how Hsp90 interacts with these proteins, and this information can be used to develop new drugs that inhibit Hsp90 function, preventing Hsp90 from 'chaperoning' proteins that are involved in disease.
Technical Summary
The molecular chaperone Hsp90 is an essential protein involved in many signaling pathways and is a drug target for several diseases including cancer. Many aspects of its function are poorly described at a molecular level, including how cochaperones link Hsp90 to substrate proteins and how different functional classes of substrate interact with Hsp90. The development of novel therapeutics will rely on gaining this kind of detailed mechanistic understanding of Hsp90 function.
The cochaperone Sgt1 recruits several proteins involved in kinetochore assembly and function to Hsp90 for activation. The kinetochore is the complex of proteins that bridges sister chromatids and microtubules in mitosis; it is essential for fidelity of genetic propagation during cell division. This project aims to contribute to a molecular description of the mechanisms involved in kinetochore assembly by focusing on the protein Ctf13, a protein of the yeast kinetochore that requires Hsp90 and Sgt1 function for its activation and the subsequent assembly of a functional kinetochore. The interaction between Ctf13 and Hsp90 is bridged by the cochaperone Sgt1 and the kinetochore protein Skp1, which forms a heterodimer with Ctf13. The goal of this project is to determine the structure of the complex formed by these proteins and from this structure, to understand how Sgt1 and Skp1 facilitate the activation of Ctf13 by Hsp90.
We will use protein crystallography to gain an atomic resolution structure of the Sgt1-Skp1 interaction, and single particle electron microscopy to determine the structure of the complex formed by these proteins with Hsp90 and Ctf13. This structural work will be complemented by biophysical studies, to probe the role of phosphorylation of Sgt1 in influencing oligomerisation of Sgt1 and its interaction with Skp1.
The cochaperone Sgt1 recruits several proteins involved in kinetochore assembly and function to Hsp90 for activation. The kinetochore is the complex of proteins that bridges sister chromatids and microtubules in mitosis; it is essential for fidelity of genetic propagation during cell division. This project aims to contribute to a molecular description of the mechanisms involved in kinetochore assembly by focusing on the protein Ctf13, a protein of the yeast kinetochore that requires Hsp90 and Sgt1 function for its activation and the subsequent assembly of a functional kinetochore. The interaction between Ctf13 and Hsp90 is bridged by the cochaperone Sgt1 and the kinetochore protein Skp1, which forms a heterodimer with Ctf13. The goal of this project is to determine the structure of the complex formed by these proteins and from this structure, to understand how Sgt1 and Skp1 facilitate the activation of Ctf13 by Hsp90.
We will use protein crystallography to gain an atomic resolution structure of the Sgt1-Skp1 interaction, and single particle electron microscopy to determine the structure of the complex formed by these proteins with Hsp90 and Ctf13. This structural work will be complemented by biophysical studies, to probe the role of phosphorylation of Sgt1 in influencing oligomerisation of Sgt1 and its interaction with Skp1.
Planned Impact
The two main beneficiaries of this research beyond academic users are the pharmaceutical industry and the wider public.
More than 10 Hsp90 inhibitors are currently in clinical trials and initial results are promising in a range of cancers, including prostate, breast, melanoma and multiple myeloma, confirming Hsp90 as a valid cancer therapeutic target. These drugs inhibit chaperone function by directly competing with ATP-binding, inhibiting the ATPase cycle that is required for client protein activation. Direct inhibition of Hsp90's interaction with client proteins is another suitable method of abrogating Hsp90 function, however development of suitable inhibitors requires details of these interactions at a molecular level. The results from this research will contribute to this poorly understood area of Hsp90 structural biology. Pharmaceutical companies with anti-cancer drug development programs that target inhibition of Hsp90 will therefore be users of this research. This includes Astex Therapeutics and Vernalis in the UK and Novartis, Synta Pharmaceuticals, MedImmune, Infinity Pharmaceuticals and NexGenix in the US.
In the long term, by potentially contributing to the development of new anti-cancer therapeutics, this research will contribute to the health of the wider public. At present 1 in 3 people in the UK will develop cancer during their lifetime and 1 in 4 deaths in the UK are currently caused by cancer. A larger battery of anti-cancer drugs will therefore contribute to the long term to the health of the nation.
More than 10 Hsp90 inhibitors are currently in clinical trials and initial results are promising in a range of cancers, including prostate, breast, melanoma and multiple myeloma, confirming Hsp90 as a valid cancer therapeutic target. These drugs inhibit chaperone function by directly competing with ATP-binding, inhibiting the ATPase cycle that is required for client protein activation. Direct inhibition of Hsp90's interaction with client proteins is another suitable method of abrogating Hsp90 function, however development of suitable inhibitors requires details of these interactions at a molecular level. The results from this research will contribute to this poorly understood area of Hsp90 structural biology. Pharmaceutical companies with anti-cancer drug development programs that target inhibition of Hsp90 will therefore be users of this research. This includes Astex Therapeutics and Vernalis in the UK and Novartis, Synta Pharmaceuticals, MedImmune, Infinity Pharmaceuticals and NexGenix in the US.
In the long term, by potentially contributing to the development of new anti-cancer therapeutics, this research will contribute to the health of the wider public. At present 1 in 3 people in the UK will develop cancer during their lifetime and 1 in 4 deaths in the UK are currently caused by cancer. A larger battery of anti-cancer drugs will therefore contribute to the long term to the health of the nation.
People |
ORCID iD |
Cara Vaughan (Principal Investigator) |
Publications
Willhoft O
(2017)
The crystal structure of the Sgt1-Skp1 complex: the link between Hsp90 and both SCF E3 ubiquitin ligases and kinetochores.
in Scientific reports
Zhang W
(2018)
Insights into Centromere DNA Bending Revealed by the Cryo-EM Structure of the Core Centromere Binding Factor 3 with Ndc10.
in Cell reports
Zhang W
(2019)
Insights into Centromere DNA Bending Revealed by the Cryo-EM Structure of the Core Centromere Binding Factor 3 with Ndc10
in Cell Reports
Description | (1) Using protein crystallography we have determined the structure of a complex (the Sgt1-Skp1 complex) involved in cell replication (mitosis) and the degradation of proteins in the cell that are no longer required. This structure enables this aspect of these pathways to be understood in atomic resolution detail. These pathways are essential for a healthy cell and this knowledge allows researchers to delineate differences between healthy and diseased cells. (2) Using cryo electron microscopy we have determined the structure of the CBF3 complex involved in mitosis of yeast. This is an essential complex is part of the molecular machinery required for mitosis, helping to ensure that genetic information is accurately passed from one generation to another. CBF3 associates directly with the chromosomes that are being distributed between the mother and daughter cells. The assembly of the CBF3 complex depends on the interaction of the Sgt1-Skp1 complex mentioned in (1). Together results (1) and (2) allow the assembly pathway of this essential mitotic complex to be mapped at atomic resolution. These molecular details describe the functioning of a healthy yeast cell and provide a model to begin to understand how mitosis works in humans. |
Exploitation Route | Can be used to investigate in more detail the in vivo consequences of disrupting this interaction. Can we used as the starting point for further structural studies of complexes involved in mitosis in yeast. We plan to carry out this research and to make this the basis of a new grant application. |
Sectors | Pharmaceuticals and Medical Biotechnology |
Description | Birkbeck Wellcome Trust ISSF |
Amount | £38,536 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 10/2016 |
End | 05/2017 |
Description | HEIF Commercial Seed Funding |
Amount | £6,000 (GBP) |
Organisation | Birkbeck, University of London |
Sector | Academic/University |
Country | United Kingdom |
Start | 05/2012 |
End | 11/2012 |
Description | HEIF Commercial Seed Funding |
Amount | £4,862 (GBP) |
Organisation | Birkbeck, University of London |
Sector | Academic/University |
Country | United Kingdom |
Start | 02/2013 |
End | 11/2013 |
Title | EMD-0051 |
Description | Cryo EM structure of the core CBF3 complex bound to domains 1-2 of Ndc10 |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | First high resolution structure to map the binding site of Ndc10 on the core CBF3 complex |
URL | https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-0051 |
Title | EMD-0052 |
Description | A masked CryoEM map of Ndc10 domains 1-2 to improve the resolution of this part of the CBF3 complex |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | Allowed a higher resolution model of the CBF3 core complex bound to Ndc10 to be built |
URL | https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-0052 |
Title | EMD-4241 |
Description | Cryo EM map of the core Centromere Binding Factor 3 complex |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | First complete atomic model of the core CBF3 complex |
URL | https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-4241 |
Title | PDB 5AN3 |
Description | Protein Crystal Structure of the Sgt1-Skp1 Complex |
Type Of Material | Database/Collection of data |
Year Produced | 2014 |
Provided To Others? | No |
Impact | Structure will be released to the community on publication of the accompanying paper |
Title | PDB 6fe8 |
Description | Atomic model of the core Centromere Binding Factor 3 |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | First complete atomic model of the core CBF3 complex |
URL | https://www.rcsb.org/structure/6FE8 |
Title | PDB 6gsa |
Description | Atomic model derived from Cryo-EM map of the core CBF3 model bound to Ndc10 domains 1-2 |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | First atomic model of this complex |
URL | https://www.rcsb.org/structure/6gsa |
Description | Sgt1 collaboration (Millson) |
Organisation | University of Lincoln |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have provided structural data that has informed their experiments |
Collaborator Contribution | They have provided yeast genetic analyses that complement our data |
Impact | Disciplines involved: Yeast genetics, Structural Biology, Biochemistry, Biophysics Publication under consideration at JBC |
Start Year | 2012 |