Powder Diffraction Methods for Membrane Protein Structure Determination
Lead Research Organisation:
Birkbeck, University of London
Department Name: Biological Sciences
Abstract
Membrane proteins comprise a large proportion of all the proteins coded by human and other eukaryotic genomes, and are the targets of more than one-half of all the pharmaceutical drugs marketed today. Knowledge of their three-dimensional structure is important for understanding how they function, and for the development of new drugs for the treatment of diseases. Protein X-ray crystallographic studies, which require well-ordered, large single crystals of the protein, provide such structural information. However, one of the major obstacles to membrane protein structure determinations currently is the ability to produce crystals of a size and quality suitable for single crystal studies. Although often many much smaller crystals can be produced, there has yet to be a method developed to utilise these for the determination of the structure of membrane proteins. The aim of this project is to develop both the methodology and tools necessary to determine the structure of membrane proteins based on samples not of single crystals, but of bunches of very small (microcrystals) using powder diffraction techniques.
Technical Summary
Membrane proteins comprise roughly one third of all the proteins coded by eukaryotic genomes, and are the targets of more than one-half of all currently marketed pharmaceuticals, although there is a relative dearth of crystal structures of this important class of proteins. A major obstacle to crystal structure determination is the ability to produce three-dimensional crystals of a size and quality suitable for single crystal structure determinations. Often, however, it is possible to produce showers of microcrystals which are not suitable for single crystals studies, and which resistant attempts to improve their size.
The aim of this project is the development of a method and associated tools for membrane protein structure determination based on powder diffraction of three-dimensional microcrystals.
The aim of this project is the development of a method and associated tools for membrane protein structure determination based on powder diffraction of three-dimensional microcrystals.
Planned Impact
Membrane proteins comprise roughly one third of all the proteins coded by eukaryotic genomes, and are the targets of more than one-half of all currently marketed pharmaceuticals. However, the number of crystal structures that have been determined for membrane proteins greatly lags behind the number of structures that have been determined for soluble proteins. One of the major obstacles to structure determination is the ability to produce crystals of a size and quality suitable for single crystal determinations. Often, however, it is possible to produce showers of microcrystals, which are not suitable for single crystals studies, and which resistant attempts to improve their size. The development of a method for structure determination that could enable the use of powder diffraction on microcrystals would provide a significant benefit for both academic and industrial labs. Both the methodologies developed and the structures produced would be of particular value in pharmaceutical, insecticide, and food industries.
Publications
Bagnéris C
(2015)
Structural model of the open-closed-inactivated cycle of prokaryotic voltage-gated sodium channels.
in The Journal of general physiology
Bagnéris C
(2013)
Role of the C-terminal domain in the structure and function of tetrameric sodium channels.
in Nature communications
McCusker EC
(2012)
Structure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing.
in Nature communications
Naylor C
(2015)
Sodium Ion Coordination in the Selectivity Filter of a Voltage-Gated Sodium Channel
in Biophysical Journal
Naylor CE
(2016)
Molecular basis of ion permeability in a voltage-gated sodium channel.
in The EMBO journal
Sait LG
(2020)
Cannabidiol interactions with voltage-gated sodium channels.
in eLife
Sula Altin
(2016)
Sodium Channel/Ligand Complex Structures as a Guide for Rational Drug Design
in BIOPHYSICAL JOURNAL
Description | lead to crystal structures of ion channel published in high impact journals by another method we also learned that this method is not the best one for membrane protein structure determination - it has been superceded by free electron lasers and cryoEM, and knowledge of this is valuable |
Exploitation Route | the structures we produced by crystallography have applications in pharmaceutical development |
Sectors | Pharmaceuticals and Medical Biotechnology |
Description | Pfizer Neusentis funding |
Amount | £20,000 (GBP) |
Organisation | Pfizer Ltd |
Department | Neusentis Pfizer |
Sector | Private |
Country | United Kingdom |
Start | 05/2014 |
End | 01/2015 |
Description | collaboration with Pfizer |
Organisation | Pfizer Ltd |
Department | Neusentis Pfizer |
Country | United Kingdom |
Sector | Private |
PI Contribution | crystal structures and functional studies of sodium channel/drug complexes |
Collaborator Contribution | provided 0.5 funding for one year for postdoc and compounds for characterisation |
Impact | publications (see list) |
Start Year | 2014 |
Description | crystallography and culture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | technical advisor for development of dance performances and "in residence" talks for the public on women in crystallography the opera is the basis for funding applications to arts agencies |
Year(s) Of Engagement Activity | 2014 |
URL | https://www.youtube.com/watch?v=8d0rpEdCTac |
Description | international advisory board (australia) |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | international advisory board for scientific centre of excellence (australia) |
Year(s) Of Engagement Activity | 2008,2009,2010,2011,2012,2013,2014,2015,2016,2017 |
Description | talk to 5th/6th form students and the general public on 100 years of crystallography |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | Regional |
Primary Audience | Schools |
Results and Impact | talk to public and 5th/6th formers students expressed interest in science |
Year(s) Of Engagement Activity | 2014 |