Micromechanical measurements in living embryos

Lead Research Organisation: University of Cambridge
Department Name: Engineering

Abstract

The embryo is a complex system wherein local tissue displacement and deformation is the result of local and distant force-generating mechanisms coupled through the largely-unknown mechanical properties of the composite tissues. One particular case in point is that of neurulation, the process by which the early sheet of cells, called the neural ectoderm, folds itself into the three dimensional structure that is the framework upon which the vertebrate central nervous system grows. At its simplest, such as neurulation in the spinal cord, the process involves the folding of a sheet roughly into a cylinder but even that is poorly understood. Neurulation in the brain is far more complex but essential for us to understand; errors in its morphogenesis are the root cause of debilitating and fatal birth defects. Thanks to novel imaging and image processing technologies, we have made great strides in developing methods to capture the movements of cells and tissues. Three-dimensional time-lapse images, analysed using in toto cell tracking and computational analyses show a rich spectrum of tissue remodelling. However, despite this apparently complex scheme, we believe that these patterns could originate from a well-orchestrated series of stereotypical force-generating mechanisms that are patterned in space and overlapping in their influence. We can already make predictions of how these may act but to verify these models and progress further we need far greater insight into the changing physical properties of tissues as they develop. Biologists are in need of tools to address such problems in the context of the complex and changing conditions that exist within the animal embryo. Our aim is to develop such a tool and use it to study the balance between active processes and the underlying mechanical properties of developing tissues that is essential in shaping correct morphogenesis of the embryo.

We plan in this project to develop a minimally-invasive tool able to probe the local mechanical response of living tissues. The device will be relatively portable, mountable on a standard microscope stage. It will impose a controlled force upon a ferromagnetic bead located in the biological sample. The direction and magnitude of force to be controlled. Our preliminary tests have demonstrated that such an experiment is achievable in zebrafish embryos. Animals develop normally with these particles in place and modest magnetic fields can be used to gently displace beads within these embryos. This methodology will enable us to investigate largely unexplored areas of developmental biology. First, we will characterise for the the elastic and viscous/plastic properties of living tissues within a normally developing embryo. This information is important to establish the range of forces required to observed processes, and to discriminates between possible mechanisms. We will focus our attention to the analysis of tissue maturation during development. The transition from blastula to gastrula is a good example where cells thought to progressively form tighter junctions. We will follow the evolution of the tissue mechanical properties with developmental time and ask if this temporal variation is key to normal development. Using statistics on many embryos, we will be able to study spatial patterns of mechanical properties. We will more specifically characterise how much of the patterning involved in brain development is due to variations in passive properties, and how the balance between active processes and the surrounding tissue is critical for normal development. Such questions and the methodology developed here to address them apply to most morphogenetic transformations in and are expected to be highly relevant elsewhere.

Technical Summary

Our challenge is to understand how tissue mechanical properties are patterned to ensure proper morphogenesis. To address this question requires tools to probe in vivo the local stiffness and plasticity of tissues as development proceeds. We propose to develop a portable device, mountable on a standard microscope stage, that can impose a controlled force upon a ferromagnetic bead located in a living zebrafish embryo. The device will be designed with multiple poles to permit the direction and magnitude of force to be controlled. We will be able to characterize for the first time, using our own established methods of confocal imaging and image processing, the deformation field of the tissue around the magnetic bead for a known force, and from this estimate the local stiffness and visco-elastic properties of the surrounding tissue. Each experiment will use a single bead placed at a precise location in the embryo. We will use induced displacement of the bead to follow local mechanical properties as that tissue develops. Such longitudinal studies are impossible with more invasive techniques such as laser ablation or explant characterisation. Further, by accumulating statistics on these quantities over many embryos, we will generate mechanical maps aligned with morphogenetic strain maps of those same embryos. We will apply this approach to problems of increasing complexity.

Our first study will be of the visco-elastic properties of blastula cells. We will then investigate the mechanical coupling between yolk flow and cell spreading during the fish epiboly. Third, we will monitor the maturation of blastula cells towards the onset of gastrulation. Finally, we will explore the spatial patterning of strains and tissue properties during zebrafish brain and spinal cord neurulation. In all cases, we will show how the patterning of mechanical properties direct tissue morphogenesis.

Planned Impact

This proposal will benefit the public by increasing the stock of useful knowledge, by contributing to the creation of new scientific methodologies, by stimulating the development of scientific networks and thus increasing social interaction, by increasing the supply of skilled graduates and researchers, and by enhancing the problem-solving capacity through undergraduate, graduate and postdoctoral teaching.

Increasing the stock of knowledge on morphogenesis is very important as this will impact many other fields and will support progress in medicine. Gaining a deeper understanding of morphogenetic mechanisms is essential to improve human health in three areas. First, to better understand birth defects, which are now the leading cause of infant mortality in developing countries, with neural tube closure malformations alone affecting 0.5-2/1000 pregnancies. Second, to understand cancer metastasis: there is evidence that many cancers invade healthy tissues through collective cell movements that are very reminiscent of embryonic morphogenetic movements. Finally, to develop regenerative medicine: tissue and organ engineering will require in-depth knowledge of morphogenetic mechanisms to be able to build three-dimensional structures following stem cell manipulation. Creation of new scientific methodologies will complement the increase in knowledge about morphogenesis and support progress in the above areas as well. In addition, software tools and protocols developed through the proposed work will increase the stock of scientific methodologies that can be applied to a variety of other problems.

The proposed research aims to reduce particular aspects of a complex biological system in to a simpler but quantitative description, using engineering skills, physical concepts and state of the art imaging. The general approach and some of the underlying techniques are directly applicable to a wide range of problems in science and society. We are actively training students at undergraduate, graduate and postdoctoral level, who will benefit from gaining numerical and problem-solving skills. The knowledge and methodologies gained from the proposed research will also be disseminated through the creation of specific forums such as a wiki site, the Cambridge Advanced Imaging Centre and the QuanTissue Research Network Programme. This will develop scientific networks at national and international levels and thus increasing social interaction within the UK and beyond.
 
Description The project's aim is to monitor and analyse the establishment and patterning of tissue rigidity in developing embryos, using the zebrafish as a model system. We use magnetic particles with cell-size diameters to impose known forces and calculate their resulting displacement and the surrounding tissue deformation using light microscopy. The tool is functional, and currently used to study early stages of zebrafish development. We focus on the blastula stage, where cells undergo a compaction followed by a transition to migration. We discovered that tissue stiffens and becomes more viscous during this stage of development. We investigated how cellular adhesion, actin polymerisation (involved in the cell cytoskeleton and driving migration) and myosin (controlling cell contractility) contribute to the evolution of mechanical properties of the tissue. Interestingly, the trends observed are at odds with what happens in matured tissues where contractility tends to contribute to stiffness. Here, contractility is found to prevent the stiffening of the tissue, while cell migration promotes it. This difference highlights the fact that early tissues are fragile and rely on a soft cell cortex and protrusive cell activity to establish contacts between cells. Contractility forces the cells to remain round and therefore limits the opportunities for contact.
Exploitation Route Two publications are expected to be available soon. A first publication currently is under revision; it consists in a biological study of the evolution of stiffness and dissipative properties during early development. The work has already been and will be presented at conferences, and are exploring collaborations with other labs interested in using our experience. The measurements of embryo mechanical properties will be very useful to refine our understanding of embryo development and discriminate between models. A second publication currently exists as a draft. It describes the instrument we developed and some typical biological applications.
Sectors Pharmaceuticals and Medical Biotechnology,Other

 
Title RHEOS 
Description We created and published a software package to analyse rheological datasets using advanced mathematical methods. The tools was developed and used as part of our RCUK funded research programs, and then released in the public domain following good software engineering practice. The package is supported by a publication in the Journal of Open Source Software. 
Type Of Material Improvements to research infrastructure 
Year Produced 2019 
Provided To Others? Yes  
Impact This research tool has facilitated our own research (doi:10.1098/rsos.190920), and is already used by other groups, see for instance doi:10.1039/C9SM02158B, published early in 2020. 
URL https://github.com/JuliaRheology/RHEOS.jl
 
Title Research data supporting "Tumour heterogeneity promotes collective invasion and cancer metastatic dissemination" 
Description The dataset contains: - the source code used for the simulations, - the raw data of the plots included in the paper, - supplementary videos 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Description Collaboration with Pietro Cicuta's Group 
Organisation University of Cambridge
Department Brain Mapping Unit
Country United Kingdom 
Sector Academic/University 
PI Contribution The laboratory of Prof Cicuta has developed systems of giant vesicles with tunable adhesive properties. We are collaborating with his team to characterise the mechanical properties of such materials. We are supporting one of his PhD students who is using the setup developed thanks to the grant BB/K018175/1.
Collaborator Contribution Our partners provide us with a model system that is well understood from a biophysical point of view. We plan to correlate quantities such as membrane tension and adhesive strength with mechanical properties at the mesoscopic (tissue) scale. We hope that this will help us better understand the biological control of mechanical properties in living tissues.
Impact Two PhD students are involved in this collaboration. There are no published outputs at the moment.
Start Year 2016
 
Description Collaboration with Rob Kay (MRC - LMB) 
Organisation Medical Research Council (MRC)
Department MRC Laboratory of Molecular Biology (LMB)
Country United Kingdom 
Sector Academic/University 
PI Contribution We used our technical skills to create environments where the role of mechanical forces and pressure on cell migration could be studied. This sheds light on how cells migrate within tissues.
Collaborator Contribution Our partner support the biological side of these experiments, provided expertise, cell cultures and reagents.
Impact A technical paper was published in 2017 (Mol. Biol. Cell, 2017, 28:6 809-816). A biological study is in preparation.
Start Year 2014
 
Title Development of magnetic tweezers combined with Light Sheet imaging 
Description The device we developed essentially combine two existing tools, magnetic tweezers and light sheet imaging, into a single platform specifically tuned for the study of embryo development. 
Type Of Technology Systems, Materials & Instrumental Engineering 
Year Produced 2018 
Impact The work will be made publicly available in 2018. The anticipated impact include academic collaborations and other groups developing similar tools based on our design. 
 
Title Rheos 
Description The software library provides a computational framework to model the rheological response of materials presenting a power law behaviour. Such behaviour has been observed across a broad range of biological materials. 
Type Of Technology Software 
Year Produced 2018 
Open Source License? Yes  
Impact It has provided us with a reliable mechanism to extract material parameters in monolayers and embryo tissues. This has allowed the prediction of complex behaviours in monolayers, as recently reported in https://www.biorxiv.org/content/10.1101/543330v1. 
URL https://github.com/JuliaRheology/RHEOS.jl
 
Description American Physical Society March Meeting 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The APS March meeting is the main annual meeting of the American Physical Society where recent research findings are presented to the scientific and wider community.
Year(s) Of Engagement Activity 2016
URL https://meetings.aps.org/Meeting/MAR16/Session/P55.1
 
Description Cell Mechanics Workshop, Curie Institute - Invited contribution 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The goal of this workshop was to bring together biologists and experimental and theoretical physicists to discuss current topics in cell motility from different perspectives. A strong focus is made on the interaction during the talks and in between sessions. We aim at a mixed audience with a diverse scientific background and different levels of professional experience from students to leading scientists in the field.
Year(s) Of Engagement Activity 2015
URL http://www.labex-celtisphybio.fr/cell-motility-workshop-2015/
 
Description EFOR Annual Meeting - Invited contribution 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact This meeting is dedicated to the use of animal models in biology, bringing together biologists working on similar questions but working on different models. A Kabla presented there current work on zebrafish mechanics. Discussions at the meeting provided useful feedback on the research.
Year(s) Of Engagement Activity 2015
URL http://efor.fr/images/doc/EFOR_2015.pdf
 
Description FOR1756 DFG meeting in Cassis 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact This event was a research focused meeting to share with recent progress and unpublished work with colleagues, including a significant proportion of PhD students and early career researchers.
Year(s) Of Engagement Activity 2018
 
Description INSERM Workshop 241 - Live imaging of morphogenesis in 4D: probes, microscopy techniques and quantification, Bordeaux 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact This workshop consisted in a series of talk/lectures to graduate students to introduce the latest development in the field imaging applied to developmental biology.
Year(s) Of Engagement Activity 2016
 
Description Invited talk, Kings College, University of London 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact An exchange of research ideas with fellow researchers and students interested in developmental birth defects.
Year(s) Of Engagement Activity 2014
 
Description Invited talk, University of Dundee 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact A public lecture and visit to laboratories of numerous research groups. Productive meets were held with groups sharing interests in developmental biology and/or the development of computational tools for biological research.
Year(s) Of Engagement Activity 2014
 
Description Invited talk, University of Durham 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact A wide-ranging programme, including particular emphasis on interactions with undergraduate students, as well as researchers in biology and computer science.
Year(s) Of Engagement Activity 2014
 
Description Physics of Living Matter symposium 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The PLM series grew nine years ago from an interest to promote the interface between the Life and Physical Sciences in Cambridge and over the years has become a popular annual event that attracts people from outside and abroad. Over the last three years the Symposium has been organized jointly between the University of Cambridge and University College London as a way of bringing together the communities that exist in these institutions.

In this meeting, students and postdocs of the research group presented recent results about the use of magnetic tweezers to probe mechanical properties of embryos. Good feedback was received and connection with other groups were made.
Year(s) Of Engagement Activity 2015
URL http://www.plm-symposium.org/
 
Description Symposium on Collective Cell Migration - Invited contribution 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The aim of this symposium is to bring together an interdisciplinary group of scientists working at the interface between physics and biology to understand collective cell migration in a quantitative manner. It took place at the Internationales Wissenschaftsforum Heidelberg (IWH), a beautiful villa in the old city of Heidelberg that is a perfect location for intense and interdisciplinary discussions in a relatively small group (60-70 participants). In addition to the 15 invited speakers (list see below), contributed talks will be selected from the submitted abstracts and posters will be on display during the whole meeting.
Year(s) Of Engagement Activity 2015
URL http://www.thphys.uni-heidelberg.de/~biophys/index.php?lang=e&n1=iwh2015
 
Description World congress in Biomechanics - Invited contribution 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The World Congress of Biomechanics is an international meeting held once every four years, rotating among Europe, Asia and the Americas. This, the 7th WCB, will once again bring together engineers, scientists from various disciplines including biology, physics, mathematics, computer science, chemistry and various clinical specialities. Applications range from basic biology to medical devices to the latest technologies. Researchers, engineers from industry, medical doctors, academics, and students are all welcome. Vendor exhibitions will highlight the latest technologies, publications, and medical devices.

Current research was presented at the meeting, reaching international audience.
Year(s) Of Engagement Activity 2014
URL https://esbiomech.org/newsletter/esbiomech-newsletter-autumn-2013/7th-world-congress-of-biomechanics...