Super-resolution multiphoton imaging of synaptic transmission

Lead Research Organisation: University of Leicester
Department Name: Cell Physiology and Pharmacology

Abstract

In recent years, several technological advances have led to the development of microscopes that can observe objects in greater detail than ever before. We can resolve objects that are closer together than previously thought possible and this has spawned a variety of different methods that allow what is now called "super-resolution" microscopy. I have developed a unique prototype microscope that operates with an infra-red laser which allow visualisation of fluorescent molecules deep within tissues. It presently offers a more than two fold improvement in spatial resolution compared to existing microscopes of a similar type and it can also operate in a different mode at speeds over 100 times faster than commercial systems.

Here, we would like to continue the development of this microscope to improve the speed and resolution further and to make it sufficiently user friendly for experimentation in living brain tissue. We will develop the microscope with a view towards commercialising the technology to make it readily available to other researchers. We would then like to use it to examine why some of the specialised points of communication between excitable cells in the brain (synapses) behave differently from others. We will compare how calcium signalling differs in different synapses formed by the same cells as calcium both triggers and controls the sensitivity of chemical communication in the brain. The absolute level of calcium within the presynaptic terminals may well represent the mechanism for the retention of short-term memory. We will then examine the link between calcium signalling and transmitter release using measurements of electrical activity as well as optical methods of visualising release. Finally, we will use a strain of mouse that has been genetically modified to express a calcium sensor in presynaptic terminals to establish what are the mechanisms that give rise to differences in calcium signalling and transmitter release at synapses.

Technical Summary

By combining structured illumination with localisation and processing algorithms developed for stochastic imaging techniques, I have developed a super-resolution multiphoton microscope with a more than two fold improvement in lateral (xy) and axial (z) resolution. By using an acousto-optic deflector (AOD) and an acousto-optic modulator (AOM) system that allows wavelength dependent compensation of temporal and spatial aberration associated with pulsed lasers passing through AOD devices, it is possible to illuminate specimens with a sequence of overlapping grid patterns. Each diffraction-limited spot is identified and located and then all spots are processed to produce a super-resolution image. The microscope can also be used in a high-speed mode where fluorescent light from individual points of interest can be measured at rates up to 50 KHz.

In this application, we would first like to rebuild the microscope using optical components that are optimised for multiphoton imaging and then to characterise the improvement in spatial and temporal performance that is gained. This will enable us to speak with companies with a view towards commercialisation. The microscope will then be used in both high speed and super-resolution modes to examine the role of presynaptic calcium signalling on the release characteristics of synapses formed between cerebellar granule cells and Purkinje cells. We have previously shown that synapses formed by different segments of the same axon have very different release properties. We intend to establish whether spatial or temporal differences in calcium signalling are responsible for these differences. Finally, we will use a transgenic mouse developed in my laboratory that expresses a calcium sensor selectively in presynaptic terminals to find the mechanisms responsible for differences in synaptic release.

Planned Impact

This project benefits significantly upon the prior development of a series of tools and technologies designed to facilitate visualisation of dynamic events in living tissue. The prototype multiphoton microscope described here is unique and has a great potential for commercial success because it is faster and operates at a higher resolution than any other currently available. I have previous experience of microscope development and I am already working with a company (Prior Scientific) to commercialise a high-speed, digital confocal microscope. Knowing that this can be a fairly long-winded process, I intend to contact companies at a very early stage of this project and to apply for further funding to assist in commercialisation within the first 12 months. I will apply for Pathfinder funding for a market report so that we can assess the most appropriate way to take the technology to market. It is likely that the intellectual property will be protected through a patent application and I am already in discussions with the enterprise office at Leicester University in this regard.

Preliminary to this application, we received BBSRC funding to develop a series of sensors that allow aspects of synaptic activity to be measured optically in real time. One of the calcium sensors we made has been use to generate two strains of transgenic mouse. One of these strains will be used in this application. Sensor expression is under the control of the thy1.2 promotor. In the first mouse, expression is observed in most regions of the brain we have so far studied but it is particularly high in hippocampus. This provides a tool that is potentially very useful to the entire neuroscience community because we can use these mice to look at presynaptic activation in models ranging from dissociated cultures, to organotypic cultures to in vivo measurements in awake, behaving animals. The mice can be used to detect synaptic connectivity and measure signalling strength and, as such, should be hugely useful to the entire neuroscience community because it will be possible to examine precisely where and when presynaptic inputs to neurones and non-neuronal cells in the brain are activated and how they are modified.

The transgenic mouse can also be interbred with other animals and so we envisage it will be possible to make transgenic mice that have both a model of disease such as Alzheimer's disease as well as a sensor that allows a direct measurement of potential changes in synaptic transmission during disease progression.

In order to publicise the importance of these sensors, we need to demonstrate their use in situ and this is one of the corollary aims of this application. We have now characterised the sensors in model systems and used them in hippocampal cultures to examine synaptic signalling and we are in the process of submitting this work for publication. Academic beneficiaries will be informed through the usual means of publication and conference attendance but we will also bring this to the attention of our enterprise office, members of which actively inform various companies about technologies developed at Leicester University.

Other beneficiaries include the PDRA who will receive training in a range of disciplines including optics, electrophysiology and imaging as well as generic skills such as data analysis.
 
Description We have improved the technology associated with our microscope so that it now works more efficiently leading to improved image quality at depth and speed. This was achieved by implementing a digital synthesizer control system. With this improved stability and efficiency, we have examined the relationship between pre- and post-synaptic calcium at identified single presynaptic boutons using a transgenic mouse that we developed in previous awards
Exploitation Route N/A
Sectors Aerospace, Defence and Marine,Digital/Communication/Information Technologies (including Software),Education,Pharmaceuticals and Medical Biotechnology

 
Description This grant extended technology development carried out with previous awards. As part of this grant, we have implemented a new control system based upon digital synthesizer electronics. This has led to substantial improvements in stability of measurement and this feeds forward into our efforts to commercialize the technology behind this neuroscience project
First Year Of Impact 2017
Sector Digital/Communication/Information Technologies (including Software),Education,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Economic

 
Description ALERT 14
Amount £638,019 (GBP)
Funding ID BB/M012034/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2014 
End 11/2015
 
Title SuperRAMP 
Description We have developed a technique called SuperRAMP or SuperRAM which involves a new method of scanning light over samples, and subsequent image processing, to produce superresolution images. The method can be used with visible or infra-red light and is applicable to live samples. 
Type Of Material Improvements to research infrastructure 
Year Produced 2015 
Provided To Others? Yes  
Impact We were able to obtain funding to develop a superresolution facility to offer this methodology to the University and wider academic sector. The hardware and software necessary to implement these techniques have been protected by fling patents in Europe, Japan and the USA. Preliminary publications describing the software methods have been published and we are shortly due to publish the work that will describe the characteristics and utility of the method in live cells. 
 
Title IMPROVEMENTS IN OR RELATING TO SUPER-RESOLUTION MICROSCOPY 
Description The present invention relates to a method of processing images captured following structured illumination of a sample, the method comprising the steps of: identifying emission spots within each captured image; verifying the emission spots; and reconstructing an enhanced image of the sample from the emission spots. The method may comprise identifying only in focus emission spots. By identifying and processing only in focus spots, whether or not they are centred on expected illumination positions, improvements in resolution can be achieved compared to known SIM methods. In particular, by suitable selection of in focus spots, significant improvements in lateral and axial resolution can be achieved. 
IP Reference US2016252718 
Protection Patent granted
Year Protection Granted 2016
Licensed No
Impact Enabled funding to build and produce a facility utilising this technology
 
Title IMPROVEMENTS IN OR RELATING TO SUPER-RESOLUTION MICROSCOPY 
Description This invention relates to a method of processing images captured following structured illumination of a sample through which significant improvements in lateral and axial resolution can be achieved. 
IP Reference EP3060953 
Protection Patent application published
Year Protection Granted 2016
Licensed No
Impact This method forms the basis for the development of a new form of microscopy called SuperRAMP which is a super-resolution form of multiphoton microscopy. It is currently in use at Leicester University as part of a Super-resolution facility
 
Title Improvements in or relating to structured illumination microscopy utilising acousto-optic deflectors. 
Description A new method to improve on the transmission properties of acousto-optic devices for their use in microscopy 
IP Reference GB1406150.1 
Protection Patent application published
Year Protection Granted 2014
Licensed No
Impact This work has contributed to the acquisition of further funding via the BBSRC responsive mode, follow on funding and ALERT 14 programs
 
Title OPTICAL ARRANGEMENT 
Description The present disclosure relates to an improved optical arrangement for an optical imaging system or the like, comprising: an optical device; a digital micromirror device having a plurality of individually addressable micromirrors; a convex mirror; and a concave mirror concentric to the convex mirror. The convex mirror and the concave mirror define an optical triplet which is located in an optical path with the digital micromirror device and the optical device. The concave mirror comprises two concave mirror sections, one or both concave mirror sections being moveable relative to the convex mirror so as to control an image mapping between the digital micromirror device and the optical device. 
IP Reference US2014043460 
Protection Patent granted
Year Protection Granted 2014
Licensed No
Impact The device is currently in use within my lab and we are currently in discussions regarding licensing the technology
 
Title NiMan 
Description A suite of software that allows time resolved analysis of large stacks of images but also including a novel method for creating and analysing super-resolution images from structured illumination microscopy 
Type Of Technology Software 
Year Produced 2015 
Impact The software has been developed over many years and is used by members of my laboratory and collaborators to analyse data collected from the various research projects we have undertaken over the last 10 years 
 
Title NiMaq 
Description A suite of software that allows the control of imaging equipment including cameras, light sources, digital RF synthesisers, microscopes and scanning devices 
Type Of Technology Software 
Year Produced 2016 
Impact This software has been developed over many years and is the basis for most of the technical developments my lab has made over many years. We hope that it will either be released as an open source tool or form part of a spin out product that we can licence or sell 
 
Title RF Synthesiser External Operation (XOP) for Igor Pro 
Description A driver that allows control of a radiofrequency digital synthesiser for control of acousto-optic devices 
Type Of Technology Software 
Year Produced 2016 
Impact This is central to the development of our Super-resolution microscopes that use acousto-optics and forms the basis behind any future commercial products based upon this technolgy. It is central to the operation of our super-resolution facility that uses technology invented through BBSRC funding and which is currently used by members of our university 
 
Title SuperResolution Imaging Faciltiy 
Description A suite of microsccope that allow super-resolution imaging using tools and technologies developed in my laboratory with BBSRC support 
Type Of Technology Systems, Materials & Instrumental Engineering 
Year Produced 2016 
Impact We have developed a facility for members of our University, It is the first opportunity for scientists to have access to super-resolution microscopy. The technology was initially developed with BBSRC support leading to ALERT 14 funding to equip and setup the faclity. It is now starting to be used by members of the College 
URL http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/AIF/Equipment/super-resolution...
 
Title Visible wavelength acousto-optical based super-resolution microscope 
Description A novel super-resolution microscope that produced improvements in lateral and axial resolution through a combination of patterned illumination and mathematical processing of images. 
Type Of Technology New/Improved Technique/Technology 
Year Produced 2018 
Impact Ongoing 
 
Description Discussion with Microscopy Companies regarding Licensing technology 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Discussion with Zeiss regarding our technology and whether they would be interested in forming a licencing arrangement
Year(s) Of Engagement Activity 2015