Overactivity in growth and its effects on rates of ageing

Lead Research Organisation: University of Warwick
Department Name: School of Life Sciences

Abstract

Caloric restriction (CR), which is the reduction of nutrient intake without change in nutrient composition or malnutrition, is one of the few known treatments that delay ageing in a wide variety of animals, from yeast to mammals. The down-regulation of nutrient-sensing genetic pathways, such as the highly conserved TOR kinase and insulin pathways, are thought to mediate the effects of CR. How exactly the activity of nutrient-sensing pathways leads to faster ageing is not known. A popular theory suggests that high metabolism results in the production of free radicals, which causes molecular damage. However, there is some evidence that contradicts the oxidative damage theory as the cause of ageing. This research will address the mechanisms of ageing using an alternative theoretical framework. According to a theory developed recently, ageing is the result of an unintended hyperfunction of a developmental program. Thus, growth that continues later in life could lead to pathology and eventual death. This theory can explain many of the paradoxes reported for the oxidative damage theory, as well as explain why CR delays ageing. Making an analogy with a car, instead of ageing due to "rusting", this new theory proposes that ageing is like a car that drives without any brakes and driver.

We propose to study a species of nematode (roundworm) that produces genetically identical siblings, but that show different lifespan; hermaphrodites of this nematode consistently live a third longer than females. The absence of genetic differences between genders will facilitate proper control experiments for the cause of differences in lifespan. Nematodes are ideal for studying ageing because they have a relatively short lifespan, and are easy to culture and to manipulate in the laboratory. We hypothesize that females of hermaphrodites of our nematode model are ageing at different rates because they accumulate age-related pathologies that are the result of hyperfunction at different times during adulthood. We will test this hypothesis by manipulating the ageing rates using gender-modifying treatments, gene expression and gene knock-out analysis.

Our model species provides a powerful system to study the mechanisms underlying ageing, because we can culture them at large numbers and genetically manipulate their genomes as well as genders. Recent research showed that nematodes, insects and mammals share some of the same mechanisms of ageing. Therefore, we anticipate that the results of this proposal will be applicable to other organisms.

Technical Summary

The comparison of organisms that have naturally different ageing rates may lead to new insights into the causes of ageing. This research will make use of a nematode that shows plasticity in ageing. This nematode, referred by its strain name SB347, produces hermaphrodites that live a third longer than females. The advantage of this system is that we can convert one gender into another, thus being able to disentangle developmental trajectory and mode of reproduction from lifespan. SB347 has many of the features that made C. elegans a prominent model in ageing research: it can be easily cultured in the laboratory, has a short lifespan, and rapid reproduction with large progeny size. In our first aim, we will contrast the ageing process between hermaphrodites and females, and tease apart the possible developmental and physiological causes underlying the differences in ageing process. We will use microscopy and loss-of-function mutations to characterize the morphological and physiological changes that occur during ageing. In this aim, we will also investigate if the ageing process is compatible with the theory that ageing is the result of hyperfunction of developmental processes. We will study in details three types of changes that occur during ageing and that are related to reproduction (yolk, oocyte and pheromone production). In the second aim, we will test if the different modes of reproduction and different rates of calorie intake can explain differences in lifespan and ageing between the two genders. We will perform RT-qPCR, laser microsurgery and diet manipulations to investigate the role of the reproductive mode and diet in the lifespan.

Planned Impact

This research will shed some light on possible causes for ageing that are broadly applicable to a wide range of organisms. Our novel approach, of using a species with phenotypic plasticity in ageing and of using a relatively new theoretical framework for explaining ageing, may provide fresh insights into the causes of ageing. This multidisciplinary project, involves state-of-the-art bioinformatics, genetics, genomics, biochemistry, laser microsurgery and organic chemistry research techniques.

The work has high potential for future links within industry. Screening of biological compounds in the relatively long-lived vertebrate systems are labor-intensive and very costly. In contrast, the short lifespan of nematodes, simplicity and wealth of knowledge about their biology make them attractive models for pharmacological research. For the particular species described in the present proposal, it is an ideal species to screen compounds that affect ageing in more than one gender. The current models, as C. elegans, usually test the effects of ageing in only one gender, the hermaphrodite, because males are rare. No such a problem is found in SB347.

The PI will continue participating in outreach programs to disseminate results of his research to the broad public. The PI has a track record of working the lay public in presentations in parks, open-day events, schools and television.

Publications

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Description The aim of the proposal was to characterize the sex-specific ageing of a nematode. This nematode has three sexes: hermaphrodites, females and males. Hermaphrodites and females, although genetically identical, age at different rates. In the course of this study, we described the nematode and gave a name to it, Auanema rhodensis (strain SB347) (Kanzaki et al, 2017). Unexpectedly, we found that a closely related species, A. freiburgensis (strain SB372), has an even more pronounced lifespan difference between sexes. We therefore concentrated our work on in this species, in which females live 30% longer than hermaphrodites.

In our initial characterization, we found that a regulator of transcription, LSD1, correlates with the long lifespan of females. LSD1 is highly conserved in evolution and is also found in humans. High expression of LSD1 also correlates with high fat content and mate-searching behavior in A. freiburgensis. We are testing the hypothesis that these three phenotypes are functionally related. To understand the causes for sex-specific lifespan, we developed new methods of genetic manipulation to test genes whose expression correlate with longevity (Adams et al, 2018, submitted).

We found evidence that females and hermaphrodites die of different causes. In hermaphrodites, the intestine breaks down first, whereas in females it is the germline. To understand those differences at the cellular level, we started a collaboration with Maike Kittelman (Oxford Brookes University, Oxford, UK), a specialist in electron microscopy. The intestine in female seems accumulate more fat, and the cell junctions in the intestine of hermaphrodite break down prematurely. We are testing the hypothesis that the gut and germline are tissues that modulate lifespan, and that differences in rates of ageing of the same tissues in the different sexes explains the lifespan.
Exploitation Route Screens using drugs or mutations could be undertaken to unravel the epigenetic basis of lifespan differences between sexes.
We have been using a free-living nematode, named Auanema freiburgensis, that share some similarities with parasitic nematodes with complex life cycles. To apply the most recent genome editing techniques for A. freiburgensis, we had to modify the protocol substantially because of the particularities of the biology of this nematode. The same particularities are present in parasitic nematodes. In collaboration with a the group of Dr. James Lok (University of Pennsylvania), we managed for the first time to perform genome editing in human parasitic nematodes.
Sectors Pharmaceuticals and Medical Biotechnology

 
Description The findings are very recent and have not been used by others yet.
First Year Of Impact 2016
Sector Other
Impact Types Societal

 
Title Genome editing in parasitic nematodes 
Description We improved the method for genome editing in the free-living nematode that we use as model so much that we wondered if it works in other nematodes. Parasitic nematodes present many challenges, including the complicated life cycle and the anatomy that makes microinjections difficult. In a collaboration with the University of Pennsylvania, we managed to establish the genome editing in parasitic nematodes. 
Type Of Material Improvements to research infrastructure 
Year Produced 2017 
Provided To Others? Yes  
Impact It was possible to edit the genome of parasitic nematodes for the first time. 
 
Description Open Day to general public at the University of Warwick 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact 30 people of general public watched a demonstration on our ageing research, where we have shown nematodes with fluorescent markers to monitor individuals ageing at different rates.
Year(s) Of Engagement Activity 2016
 
Description Public evening 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact On Tuesday 27 November the School of Life Sciences (SLS) held its second Public Science event of the 2018/19 academic year on the Gibbet Hill campus. The event entitled 'Is Ageing Inevitable?' was run by Dr Andre Pires da Silva and Professor Nicholas Dale. It was an interactive session that combined talks and Q&A sessions. Alongside these talks, poster displays on various themes of current ageing and neurology research were displayed. We were joined by Dr Daniel Sgroi, a behavioural economist, who gave an insightful presentation on the societal consequences of ageing.

Before the event opened, 125 members of the public were registered to attend. Actual attendance was registered at 89, representing a 71% turnout (higher than most previous evenings, where turnout tends to be around the 66% mark). Audience members (ranged from secondary school students to the retired, with a large mix of members of the public and other university staff. Attendees enjoyed the interactivity of the evening and particularly the discussions surrounding society as a whole and the consequences of ageing.
Every member of the public who returned a feedback form found the evening enjoyable. Many positive comments were received regarding the interactivity of the evening and the ability to ask the speakers questions. Many respondees also found the inclusion of a talk on the societal consequences of ageing (from the view of an economist) very insightful.
Year(s) Of Engagement Activity 2018
URL https://warwick.ac.uk/fac/sci/lifesci/news/ageing