DNA-directed construction of three-dimensional photosynthetic assemblies
Lead Research Organisation:
University of Glasgow
Department Name: School of Engineering
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
This research programme seeks to establish a working platform that will assemble photosynthetic proteins within DNA nanostructures. A hallmark of our approach is to use engineered photosynthetic proteins that selectively bind to target DNA sequences - both single-stranded and double-stranded - within a DNA nanostructure. This sequence selectivity directs the assembly of these proteins within a DNA matrix, thus providing spatial and positional control. Additional positional control of the overall nanostructure will then be imparted by directing the immobilization of the DNA-photosynthetic complexes by nanolithography. This bio-inspired platform methodology merges the principles of "bottom up" DNA nanotechnology with "top down" nanolithography and would provide the means to control, for the first time, the location of each photosynthetic protein module, inter-module distance and their relative orientation in both two- (2D) and three-dimensions (3D) along surfaces. Furthermore, this new design lexicon, if successful, will provide a framework to correlate how these parameters influence overall light harvesting efficiency.
Planned Impact
Potential Economic Impact of this Research
Synthetic Biology - One of the fundamental drivers of this research programme is the synthesis of modified DNA and DNA-binding molecules. Both synthetic aspects will deliver a battery of new methods to prepare novel compounds that could have wider economic impact on the Synthetic Biology and Diagnostic sectors of Life Science research beyond the lifespan of this 3 year project.
Diagnostics - New methodology to direct the assembly of DNA nanostructures on solid surfaces will pose additional benefits to the medical diagnostic sectors, particularly those directly associated with the identification of nucleic acid and protein biomarkers. It is envisaged that the benefits will arise from the development of new surface modification chemistries, new methods to incorporate functionality into DNA, which in turn could improve the sensitivity and selectivity of new biomolecular analytes and novel techniques to detect analytes using optical methods.
Outputs: Patent protection of Intellectual Property; exploration of licensees.
Mechanisms of delivering Economic Impact: UoS's and UoG's Knowledge Exchange partnership and Impact Acceleration Account (IAA), Scottish Enterprise Proof of Concept or the Technology Strategy Board's Biomedical Catalyst; Collaborative PhD students through Biomolecular Devices CDT (UoS).
Potential Societal Impact of this Research
This research describes a Synthetic Biology-inspired rationale to produce functional DNA nanostructures. Synthetic Biology has been designated a priority research area by the British Government and "has the ability to revolutionize major industries in bio-energy and bio-technology in the UK" (David Willets). At present, the application of Synthetic Biology techniques to create functional DNA-directed devices has not been recognized as a potential area for wider exploitation. Therefore the potential societal impact could be very significant. In order to prepare for this, public engagement with stakeholders associated with the field of UK Synthetic Biology would expedite acceptance of new and emerging applications.
Outputs: Public discussion of the role of Synthetic Biology and Nanotechnology in society; Dissemination of results through the mainstream press, UoG and UoS websites.
Mechanisms of delivering Societal Impact: Delivery of a Coffee House Lecture in Glasgow's City Centre; Involvement in Glasgow Science Festival and Glasgow Science Centre events.
Synthetic Biology - One of the fundamental drivers of this research programme is the synthesis of modified DNA and DNA-binding molecules. Both synthetic aspects will deliver a battery of new methods to prepare novel compounds that could have wider economic impact on the Synthetic Biology and Diagnostic sectors of Life Science research beyond the lifespan of this 3 year project.
Diagnostics - New methodology to direct the assembly of DNA nanostructures on solid surfaces will pose additional benefits to the medical diagnostic sectors, particularly those directly associated with the identification of nucleic acid and protein biomarkers. It is envisaged that the benefits will arise from the development of new surface modification chemistries, new methods to incorporate functionality into DNA, which in turn could improve the sensitivity and selectivity of new biomolecular analytes and novel techniques to detect analytes using optical methods.
Outputs: Patent protection of Intellectual Property; exploration of licensees.
Mechanisms of delivering Economic Impact: UoS's and UoG's Knowledge Exchange partnership and Impact Acceleration Account (IAA), Scottish Enterprise Proof of Concept or the Technology Strategy Board's Biomedical Catalyst; Collaborative PhD students through Biomolecular Devices CDT (UoS).
Potential Societal Impact of this Research
This research describes a Synthetic Biology-inspired rationale to produce functional DNA nanostructures. Synthetic Biology has been designated a priority research area by the British Government and "has the ability to revolutionize major industries in bio-energy and bio-technology in the UK" (David Willets). At present, the application of Synthetic Biology techniques to create functional DNA-directed devices has not been recognized as a potential area for wider exploitation. Therefore the potential societal impact could be very significant. In order to prepare for this, public engagement with stakeholders associated with the field of UK Synthetic Biology would expedite acceptance of new and emerging applications.
Outputs: Public discussion of the role of Synthetic Biology and Nanotechnology in society; Dissemination of results through the mainstream press, UoG and UoS websites.
Mechanisms of delivering Societal Impact: Delivery of a Coffee House Lecture in Glasgow's City Centre; Involvement in Glasgow Science Festival and Glasgow Science Centre events.
Organisations
Publications

Angelucci S
(2024)
Structured light enhanced machine learning for fiber bend sensing.
in Optics express

Arp TB
(2020)
Quieting a noisy antenna reproduces photosynthetic light-harvesting spectra.
in Science (New York, N.Y.)

Bueno-Alejo CJ
(2022)
Surface Passivation with a Perfluoroalkane Brush Improves the Precision of Single-Molecule Measurements.
in ACS applied materials & interfaces

Cupellini L
(2023)
Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex.
in Photosynthesis research

Elvers I
(2022)
Phasor Analysis Reveals Multicomponent Fluorescence Kinetics in the LH2 Complex from Marichromatium purpuratum.
in The journal of physical chemistry. B

Gardiner AT
(2020)
A comparative look at structural variation among RC-LH1 'Core' complexes present in anoxygenic phototrophic bacteria.
in Photosynthesis research

Kim J
(2021)
Low-Frequency Vibronic Mixing Modulates the Excitation Energy Flow in Bacterial Light-Harvesting Complex II.
in The journal of physical chemistry letters

Macias G
(2019)
Whisky tasting using a bimetallic nanoplasmonic tongue.
in Nanoscale

McGuire K
(2023)
Supramolecular Click Chemistry for Surface Modification of Quantum Dots Mediated by Cucurbit[7]uril.
in ACS nano
Title | Raw figures from manuscript "Surface passivation with a perfluoroalkane brush improves the precision of single-molecule measurements" |
Description | Raw data from mass photometer regarding the interaction of different biomolecules with new fluorous surfaces. The data showed that these surfaces almost completely avoid non-specific interactions and therefore could be ideal for single-molecule experiments. The file format is dictated by the supplier of Mass Photometer (Refeyn), and can be opened by Discover MP software. |
Type Of Art | Film/Video/Animation |
Year Produced | 2023 |
URL | https://leicester.figshare.com/articles/figure/Raw_figures_from_manuscript_Surface_passivation_with_... |
Title | Raw figures from manuscript "Surface passivation with a perfluoroalkane brush improves the precision of single-molecule measurements" |
Description | Raw data from mass photometer regarding the interaction of different biomolecules with new fluorous surfaces. The data showed that these surfaces almost completely avoid non-specific interactions and therefore could be ideal for single-molecule experiments. The file format is dictated by the supplier of Mass Photometer (Refeyn), and can be opened by Discover MP software. |
Type Of Art | Film/Video/Animation |
Year Produced | 2023 |
URL | https://leicester.figshare.com/articles/figure/Raw_figures_from_manuscript_Surface_passivation_with_... |
Description | The aim of the grant was to take the light-harvesting proteins that appear in particular photosynthetic bacteria and explore their use nano-engineered device applications. Various strategies were employed in order to connect the 2 proteins together in a nano engineered system in order to artificially recreate there natural arrangement. These included: Using DNA Origami as a molecular peg-board to arrange the proteins. Using electron-beam lithography and specific surface chemistries in order to pattern the proteins on surfaces. Trapping the proteins together in chemically synthesised silica nanostructure. Using DNA hybridisation to 'tie' the proteins together. With the exception of the Origami approach we have had moderate success with all of the methods we have tried. We are now continuing this work in order to fully realise its potential. |
Exploitation Route | We expect that in the near future we will be able to publish our findings on a number of novel chemical patterning strategies - and DNA linkage strategies - that we have employed in order to pattern the proteins on engineered surfaces. These techniques will be broadly applicable to a large range of chemical and biochemical nano patterning applications. |
Sectors | Chemicals Healthcare Manufacturing including Industrial Biotechology |
Title | Fluorous Directed Assembly of DNA Origami Nanostructures |
Description | Data associated with the results shown in the paper Fluorous Directed Assembly of DNA Origami Nanostructures. Data includes HPLC info, AFM and AGE images, CanDo simulations, and DNA sequence information. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Internal group impact - unlocking new research avenues in higher-efficiency DNA superstructures |
URL | http://researchdata.gla.ac.uk/id/eprint/1353 |
Title | Multilayered Nanoplasmonic Arrays for Self-Referenced Biosensing |
Description | Data underpinning the associated publication. |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Title | Whisky tasting using a bimetallic nanoplasmonic tongue |
Description | Simulation data, Spectroscopy data, SEM, optical microscopy |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |