Structure and Function of the Human 1.8 Voltage-Gated Sodium Channel Associated with Pain Sensation
Lead Research Organisation:
Birkbeck, University of London
Department Name: Biological Sciences
Abstract
Voltage-gated sodium channels play essential roles in the process of signal conduction in nervous tissues. The human sodium channel (isoform 8) is primarily found in the peripheral nervous system, and in the healthy organism is responsible for pain sensation. Mutations in it cause a range of diseases, including chronic pain and certain types of multiple sclerosis. The aim of this project is to determine the three-dimensional structure of this protein (and its complexes with drugs and naturally-occuring toxins), and relate these structures to its functional properties and conformational changes which result from mutations associated with different disease states. These studies will not only provide information on the molecular basis of these diseases but also aid in the development of new pharmaceutical drugs that specifically target this channel type, leading to fewer side-effects due to adventitious interactions with other channels.
Technical Summary
Voltage-gated sodium channels play essential roles in the process of neurotransmission, with the initial phase of the action potential arising from conformational changes associated with their activation and opening. The human sodium channel isoform 8 (hNav1.8) is primarily found in dorsal root ganglion neurons and in the healthy organism is responsible for pain sensation. Mutations in it are causally related to a range of diseases, including chronic pain and certain types of multiple sclerosis. The aim of this project is to determine the first three-dimensional structure of the hNav1.8 protein (and its complexes with ligands, including natural toxins) using cryo-electron microscopy and/or crystallography, and relate these structures to its electrophysiological properties and conformational changes resulting from mutations associated with different disease states. These studies will not only inform on the molecular basis of these diseases but also aid in the development of new pharmaceutical drugs that specifically target this channel type, being potent whilst selective, thus producing fewer side-effects due to adventitious interactions with other channels.
Planned Impact
There are important potential impacts of this research both for public health and for the economy, because human sodium channels (hNavs) are essential proteins required for functioning of the healthy human organism, including pain perception. Sodium channels play critical roles in excitable tissue and are linked to many disease states. Hence, knowledge of their structure and function will benefit both the public (enhancing quality of life and productivity), and the commercial private sector (aiding in the rational development of new pharmaceuticals).
The pharmaceutical market for specific and highly efficacious sodium channel inhibitors/modulators is enormous, because the potential number of people with either chronic or acute pain is vast. It is for this reason that big pharma, as well as many smaller biotech companies, have active programmes for the development of sodium channel-targeting drugs. The availability of the structures of hNav1.8 (the isoform primarily located in the peripheral nervous system and DRG neurons that is associated with chronic and inflammatory pain) both alone and in complex with ligands, along with associated functional characterisations, should have a dramatic impact on the initial and refinement phases of new drug design. In addition to hNav1.8-specific drugs, the high level of homology of hNav1.8 to other hNav isoforms whose misfunctioning produce a wide range of other neurological and cardiovascular diseases, means that drug discovery programmes targeting the other isoforms should also benefit from the availability of hNav1.8 drug/channel complex structures: they will enable comparative modelling studies to better ensure specific targeting of treatments without side effects resulting from less specific, broad-based sodium channel inhibitors. Consequently, as an essential aspect of "quality of life" is the ability to live pain-free, information leading to the development of hNav1.8-specific drugs to treat chronic pain, should ultimately directly impact on the quality of life of the general public.
The pharmaceutical market for specific and highly efficacious sodium channel inhibitors/modulators is enormous, because the potential number of people with either chronic or acute pain is vast. It is for this reason that big pharma, as well as many smaller biotech companies, have active programmes for the development of sodium channel-targeting drugs. The availability of the structures of hNav1.8 (the isoform primarily located in the peripheral nervous system and DRG neurons that is associated with chronic and inflammatory pain) both alone and in complex with ligands, along with associated functional characterisations, should have a dramatic impact on the initial and refinement phases of new drug design. In addition to hNav1.8-specific drugs, the high level of homology of hNav1.8 to other hNav isoforms whose misfunctioning produce a wide range of other neurological and cardiovascular diseases, means that drug discovery programmes targeting the other isoforms should also benefit from the availability of hNav1.8 drug/channel complex structures: they will enable comparative modelling studies to better ensure specific targeting of treatments without side effects resulting from less specific, broad-based sodium channel inhibitors. Consequently, as an essential aspect of "quality of life" is the ability to live pain-free, information leading to the development of hNav1.8-specific drugs to treat chronic pain, should ultimately directly impact on the quality of life of the general public.
Publications
Hollingworth D
(2022)
Tamoxifen complexes with the voltage-gated sodium channel reveal novel drug binding sites
in Biophysical Journal
Liko I
(2018)
Lipid binding attenuates channel closure of the outer membrane protein OmpF.
in Proceedings of the National Academy of Sciences of the United States of America
Montini G
(2018)
Comparisons of voltage-gated sodium channel structures with open and closed gates and implications for state-dependent drug design
in Biochemical Society Transactions
Montini G
(2018)
Fenestration Mutants of a Voltage-Gated Sodium Channel that Modify Channel Blocker Ingress
in Biophysical Journal
Sait LG
(2020)
Cannabidiol interactions with voltage-gated sodium channels.
in eLife
Sula A
(2021)
A tamoxifen receptor within a voltage-gated sodium channel.
in Molecular cell
Sula Altin
(2019)
The Insecticide Fenvalerate Binds to NavMs Sodium Channels, Making them a Suitable Template for Modelling Structures of Housefly-Insecticide Complexes
in BIOPHYSICAL JOURNAL
Sula Altin
(2019)
Fenestration Differences in Open and Closed Gate Sodium Channels: A Molecular Basis for State-Dependent Drug Design
in BIOPHYSICAL JOURNAL
Zanatta G
(2019)
Valproic acid interactions with the NavMs voltage-gated sodium channel.
in Proceedings of the National Academy of Sciences of the United States of America
Title | advisor to national dance company on science-related performances for the public [continuing] |
Description | "Stilled" performances at the Royal Festival Hall and Wellcome Collection based on crystallography - i was scientific advisor |
Type Of Art | Performance (Music, Dance, Drama, etc) |
Year Produced | 2011 |
Impact | contacts from other artists interested in science/art collaborations and contacts from the general public about performance. note that this is an ongoing activity |
Description | Ways to purify this human sodium channel Ways to prepare grids for cryoEM studies Crystal structures and electrophysiology studies of sodium channels/drug complexes |
Exploitation Route | methods for studying other sodium channels and drug interactions design of new drugs for treatment of neurological diseases understanding of side effects associated with drug treatments |
Sectors | Healthcare Pharmaceuticals and Medical Biotechnology |
Description | new information on molecular basis of a recently approved drug for treatment of epilepsy novel information on potential side effects of drugs used for chemotherapy and prophylaxis |
First Year Of Impact | 2020 |
Sector | Pharmaceuticals and Medical Biotechnology |
Description | "Seeing" General Anaesthetics Bound to Sodium Channels: A Basis for Molecular Understanding, Design and Improved Function |
Amount | £30,000 (GBP) |
Funding ID | CM848 |
Organisation | Rosetrees Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 07/2019 |
End | 07/2020 |
Description | Binding and interactions of Brazilian toxins to voltage-gated sodium channels: The Rational Search for New Drugs |
Amount | £12,648 (GBP) |
Funding ID | BB/T01153X/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2020 |
End | 01/2022 |
Description | Cryo-electron microscopy studies of voltage-gated sodium channels |
Amount | £3,500 (GBP) |
Funding ID | ISSF - Birkbeck Fellowship |
Organisation | Birkbeck, University of London |
Sector | Academic/University |
Country | United Kingdom |
Start | 08/2018 |
End | 02/2019 |
Title | PDB 6YZ0 |
Description | Crystallographic coordinates deposited in the Protein Data Bank |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | Used by structural Biologists |
Title | depostion of new crystal structure entries into the protein data bank (PDB) |
Description | The PDB is the international standard data base for the deposition of crystal structures and the many crystal structures produced during this grant have been deposited for public access |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | increased understanding of drug interactions (including off-target interations of currently marketed drugs) |
Description | Collaboration with Simon Fraser University, Canada |
Organisation | Simon Fraser University |
Country | Canada |
Sector | Academic/University |
PI Contribution | We did strutural studies (crysallography, molecular biology, bioinformatics, mutations) |
Collaborator Contribution | Prof. Peter Ruben's group did electophysilogy studies (and mutagenesis) |
Impact | Publication in Elife in 2020 Article about this study in Diamond Light Source Publication |
Start Year | 2020 |
Description | Collaboration with Simon Fraser University, Canada |
Organisation | Simon Fraser University |
Country | Canada |
Sector | Academic/University |
PI Contribution | The Wallace team (Birkbeck) did all the structural and bioinformatics aspects of the partnership |
Collaborator Contribution | Prof P. Ruben's lab did the electrophysilogy aspects of the partnership, leading to a joint publication |
Impact | Publication (2020) in Elife which was also reported in an article written by the Diamond Light Source (and on their website). |
Start Year | 2020 |
Description | Collaboration with University of Sao Paulo |
Organisation | Universidade de São Paulo |
Department | Physics Institute of São Carlos |
Country | Brazil |
Sector | Academic/University |
PI Contribution | i have been involved in helping my brazilian collaborators prepare a proposal for an SRCD beamline at the Brazilian synchrotron |
Collaborator Contribution | we have worked together on the proposal and planning |
Impact | several publications, a long term partnership leading to several BBSRC partnering grants, development of a new SRCD beamline at the Brazilian synchrotron, submission and funding of a new BBSRC partnering award |
Start Year | 2012 |
Description | collaboration on nav1.8 with Tetragenetics company (USA) |
Organisation | Tetragenetics Inc |
Country | United States |
Sector | Private |
PI Contribution | isolation and purification of protein, structural studies of Nav1.8 |
Collaborator Contribution | provision of cloned and expressed protein |
Impact | phd student project (Callum Haste) |
Start Year | 2017 |
Description | Interview for article highlighting our work at Diamond Light Source |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interview by Press Office at Diamond Light Source leading to an article online and in their newsletter about our research done using the facility which was recently published.https://www.diamond.ac.uk/Science/Research/Highlights/2021/High-resolution-structural-studies-highlight-why-CBD-helps-some-people-with-epilepsy-.html |
Year(s) Of Engagement Activity | 2020 |
Description | Invited presentation at International Union of Pure and Applied Biophysics (Brazil) in 2021 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Invited talk at the IUPAB International Congress and the subject of a Journal article written about the symposium by Prof. Richard Garrett in Biophysical Reviews (2021): https://doi.org.10.107/s.s12551-02-00889-4 |
Year(s) Of Engagement Activity | 2019,2020,2021 |
Description | Royal Society of Chemistry Awards Panel Member |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | RSC Panel reviewing nominations for Annual Awards |
Year(s) Of Engagement Activity | 2020,2021,2022 |
Description | School visit (Tonbridge schools science day) |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Schools |
Results and Impact | Keynote speaker and poster judge at Tonbridge Area Schools Science day |
Year(s) Of Engagement Activity | 2019 |
Description | Teaching workshops for students, faculty and industrial scientists |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | A series of workshops on methods of analysis for CD spectroscopy given at national and international meetings and workshops, usually 2-3 days, including hands-on computing practicals. for phd and masters students, postdocs, professors and other academics and industry |
Year(s) Of Engagement Activity | 2009,2010,2011,2012,2013,2014,2015,2016,2017,2018 |
Description | UCL-ISMB Prizewinners Symposium |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Other audiences |
Results and Impact | Prize Winners Symposium (i was invited as i won the RSC Khorana Prize in 2020 |
Year(s) Of Engagement Activity | 2020 |
Description | Wikipedia citations |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Description/reference to our work on cannabidiol in Wikipedia page (not submitted by us) |
Year(s) Of Engagement Activity | 2020,2022 |
URL | https://en.wikipedia.org/wiki/Cannabidiol |
Description | annual talks for the public |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | UCL Science Centre Friday Evening Discourses and Birkbeck SET Talks for the Public talks on science for the public (5th, 6th form, and public) annually and lecture/tour at the Wellcome Collection talks no actual impacts realised to date |
Year(s) Of Engagement Activity | 2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017,2018,2019,2020,2021 |