Structure and Function of the Human 1.8 Voltage-Gated Sodium Channel Associated with Pain Sensation

Lead Research Organisation: Birkbeck, University of London
Department Name: Biological Sciences

Abstract

Voltage-gated sodium channels play essential roles in the process of signal conduction in nervous tissues. The human sodium channel (isoform 8) is primarily found in the peripheral nervous system, and in the healthy organism is responsible for pain sensation. Mutations in it cause a range of diseases, including chronic pain and certain types of multiple sclerosis. The aim of this project is to determine the three-dimensional structure of this protein (and its complexes with drugs and naturally-occuring toxins), and relate these structures to its functional properties and conformational changes which result from mutations associated with different disease states. These studies will not only provide information on the molecular basis of these diseases but also aid in the development of new pharmaceutical drugs that specifically target this channel type, leading to fewer side-effects due to adventitious interactions with other channels.

Technical Summary

Voltage-gated sodium channels play essential roles in the process of neurotransmission, with the initial phase of the action potential arising from conformational changes associated with their activation and opening. The human sodium channel isoform 8 (hNav1.8) is primarily found in dorsal root ganglion neurons and in the healthy organism is responsible for pain sensation. Mutations in it are causally related to a range of diseases, including chronic pain and certain types of multiple sclerosis. The aim of this project is to determine the first three-dimensional structure of the hNav1.8 protein (and its complexes with ligands, including natural toxins) using cryo-electron microscopy and/or crystallography, and relate these structures to its electrophysiological properties and conformational changes resulting from mutations associated with different disease states. These studies will not only inform on the molecular basis of these diseases but also aid in the development of new pharmaceutical drugs that specifically target this channel type, being potent whilst selective, thus producing fewer side-effects due to adventitious interactions with other channels.

Planned Impact

There are important potential impacts of this research both for public health and for the economy, because human sodium channels (hNavs) are essential proteins required for functioning of the healthy human organism, including pain perception. Sodium channels play critical roles in excitable tissue and are linked to many disease states. Hence, knowledge of their structure and function will benefit both the public (enhancing quality of life and productivity), and the commercial private sector (aiding in the rational development of new pharmaceuticals).
The pharmaceutical market for specific and highly efficacious sodium channel inhibitors/modulators is enormous, because the potential number of people with either chronic or acute pain is vast. It is for this reason that big pharma, as well as many smaller biotech companies, have active programmes for the development of sodium channel-targeting drugs. The availability of the structures of hNav1.8 (the isoform primarily located in the peripheral nervous system and DRG neurons that is associated with chronic and inflammatory pain) both alone and in complex with ligands, along with associated functional characterisations, should have a dramatic impact on the initial and refinement phases of new drug design. In addition to hNav1.8-specific drugs, the high level of homology of hNav1.8 to other hNav isoforms whose misfunctioning produce a wide range of other neurological and cardiovascular diseases, means that drug discovery programmes targeting the other isoforms should also benefit from the availability of hNav1.8 drug/channel complex structures: they will enable comparative modelling studies to better ensure specific targeting of treatments without side effects resulting from less specific, broad-based sodium channel inhibitors. Consequently, as an essential aspect of "quality of life" is the ability to live pain-free, information leading to the development of hNav1.8-specific drugs to treat chronic pain, should ultimately directly impact on the quality of life of the general public.

Publications

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Liko I (2018) Lipid binding attenuates channel closure of the outer membrane protein OmpF. in Proceedings of the National Academy of Sciences of the United States of America

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Zanatta G (2019) Valproic acid interactions with the NavMs voltage-gated sodium channel. in Proceedings of the National Academy of Sciences of the United States of America

 
Title advisor to national dance company on science-related performances for the public [continuing] 
Description "Stilled" performances at the Royal Festival Hall and Wellcome Collection based on crystallography - i was scientific advisor 
Type Of Art Performance (Music, Dance, Drama, etc) 
Year Produced 2011 
Impact contacts from other artists interested in science/art collaborations and contacts from the general public about performance. note that this is an ongoing activity 
 
Description Ways to purify this human sodium channel
Ways to prepare grids for cryoEM studies
Crystal structures and electrophysiology studies of sodium channels/drug complexes
Exploitation Route methods for studying other sodium channels and drug interactions
design of new drugs for treatment of neurological diseases
understanding of side effects associated with drug treatments
Sectors Healthcare

Pharmaceuticals and Medical Biotechnology

 
Description new information on molecular basis of a recently approved drug for treatment of epilepsy novel information on potential side effects of drugs used for chemotherapy and prophylaxis
First Year Of Impact 2020
Sector Pharmaceuticals and Medical Biotechnology
 
Description "Seeing" General Anaesthetics Bound to Sodium Channels: A Basis for Molecular Understanding, Design and Improved Function
Amount £30,000 (GBP)
Funding ID CM848 
Organisation Rosetrees Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2019 
End 07/2020
 
Description Binding and interactions of Brazilian toxins to voltage-gated sodium channels: The Rational Search for New Drugs
Amount £12,648 (GBP)
Funding ID BB/T01153X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2020 
End 01/2022
 
Description Cryo-electron microscopy studies of voltage-gated sodium channels
Amount £3,500 (GBP)
Funding ID ISSF - Birkbeck Fellowship 
Organisation Birkbeck, University of London 
Sector Academic/University
Country United Kingdom
Start 08/2018 
End 02/2019
 
Title PDB 6YZ0 
Description Crystallographic coordinates deposited in the Protein Data Bank 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Used by structural Biologists 
 
Title depostion of new crystal structure entries into the protein data bank (PDB) 
Description The PDB is the international standard data base for the deposition of crystal structures and the many crystal structures produced during this grant have been deposited for public access 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact increased understanding of drug interactions (including off-target interations of currently marketed drugs) 
 
Description Collaboration with Simon Fraser University, Canada 
Organisation Simon Fraser University
Country Canada 
Sector Academic/University 
PI Contribution We did strutural studies (crysallography, molecular biology, bioinformatics, mutations)
Collaborator Contribution Prof. Peter Ruben's group did electophysilogy studies (and mutagenesis)
Impact Publication in Elife in 2020 Article about this study in Diamond Light Source Publication
Start Year 2020
 
Description Collaboration with Simon Fraser University, Canada 
Organisation Simon Fraser University
Country Canada 
Sector Academic/University 
PI Contribution The Wallace team (Birkbeck) did all the structural and bioinformatics aspects of the partnership
Collaborator Contribution Prof P. Ruben's lab did the electrophysilogy aspects of the partnership, leading to a joint publication
Impact Publication (2020) in Elife which was also reported in an article written by the Diamond Light Source (and on their website).
Start Year 2020
 
Description Collaboration with University of Sao Paulo 
Organisation Universidade de São Paulo
Department Physics Institute of São Carlos
Country Brazil 
Sector Academic/University 
PI Contribution i have been involved in helping my brazilian collaborators prepare a proposal for an SRCD beamline at the Brazilian synchrotron
Collaborator Contribution we have worked together on the proposal and planning
Impact several publications, a long term partnership leading to several BBSRC partnering grants, development of a new SRCD beamline at the Brazilian synchrotron, submission and funding of a new BBSRC partnering award
Start Year 2012
 
Description collaboration on nav1.8 with Tetragenetics company (USA) 
Organisation Tetragenetics Inc
Country United States 
Sector Private 
PI Contribution isolation and purification of protein, structural studies of Nav1.8
Collaborator Contribution provision of cloned and expressed protein
Impact phd student project (Callum Haste)
Start Year 2017
 
Description Interview for article highlighting our work at Diamond Light Source 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Interview by Press Office at Diamond Light Source leading to an article online and in their newsletter about our research done using the facility which was recently published.https://www.diamond.ac.uk/Science/Research/Highlights/2021/High-resolution-structural-studies-highlight-why-CBD-helps-some-people-with-epilepsy-.html
Year(s) Of Engagement Activity 2020
 
Description Invited presentation at International Union of Pure and Applied Biophysics (Brazil) in 2021 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Invited talk at the IUPAB International Congress and the subject of a Journal article written about the symposium by Prof. Richard Garrett in Biophysical Reviews (2021): https://doi.org.10.107/s.s12551-02-00889-4
Year(s) Of Engagement Activity 2019,2020,2021
 
Description Royal Society of Chemistry Awards Panel Member 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact RSC Panel reviewing nominations for Annual Awards
Year(s) Of Engagement Activity 2020,2021,2022
 
Description School visit (Tonbridge schools science day) 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Keynote speaker and poster judge at Tonbridge Area Schools Science day
Year(s) Of Engagement Activity 2019
 
Description Teaching workshops for students, faculty and industrial scientists 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact A series of workshops on methods of analysis for CD spectroscopy given at national and international meetings and workshops, usually 2-3 days, including hands-on computing practicals. for phd and masters students, postdocs, professors and other academics and industry
Year(s) Of Engagement Activity 2009,2010,2011,2012,2013,2014,2015,2016,2017,2018
 
Description UCL-ISMB Prizewinners Symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Prize Winners Symposium (i was invited as i won the RSC Khorana Prize in 2020
Year(s) Of Engagement Activity 2020
 
Description Wikipedia citations 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Description/reference to our work on cannabidiol in Wikipedia page (not submitted by us)
Year(s) Of Engagement Activity 2020,2022
URL https://en.wikipedia.org/wiki/Cannabidiol
 
Description annual talks for the public 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact UCL Science Centre Friday Evening Discourses and Birkbeck SET Talks for the Public talks on science for the public (5th, 6th form, and public) annually and lecture/tour at the Wellcome Collection talks

no actual impacts realised to date
Year(s) Of Engagement Activity 2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017,2018,2019,2020,2021