A new framework for computational biomechanical models and 3Rs in musculoskeletal research.
Lead Research Organisation:
University of Hull
Department Name: Mechanical Engineering
Abstract
This project has two overarching goals: (1) to investigate the type and amount of experimental input data required for musculoskeletal computer models to deliver accurate predictions, and (2) in doing so provide quantitative data on the current and future potential of models to contribute to the reduction, replacement and refinement (3Rs) of animal experiments in scientific research.
To do this we will develop and validate new computational biomechanical models using mastication in rabbits as our case study. Validating computer models requires a large amount of experimental data about rabbit anatomy and feeding mechanics (e.g. muscle and bite forces). This data does not exist for rabbits, or indeed any other experimental animal. Therefore a systematic anatomical and biomechanical investigation of rabbit feeding is required in which all the primary determinants of feeding mechanics are measured from a cohort of rabbits. Computational models constructed from medical imaging data of those same rabbits can then be directly and immediately used to improve and validate computer simulations. Only in this way can models be truly validated and their potential for achieving 3Rs in future studies be demonstrated. Our specific objectives are therefore to collect: anatomical and image data on bone and muscle morphology in rabbits; in vivo data on bone motion and muscle physiology as they eat various food types; and combine these data to build and validate new computer models of rabbit feeding biomechanics.
Rabbits have been chosen because they are widely used in a variety of research areas. They are the first-choice experimental animal for dental implant design and bone (re)growth studies because of their size, easy handling and relative similarities to humans in terms of bone composition, healing and anatomy. These experiments, like many in musculoskeletal research, are highly invasive, causing pain and distress to the animals before they are euthanized. A digital model has the potential to completely replace (or maximally reduce) the use of animals in musculoskeletal research and/or medical device design. The anatomy and behaviour of a digital model can be altered and re-tested without limitation and without any harm or distress to a real animal. This can also allow, for example: a model analysis to be extended to a different strain/breed of the same species (or a similar species) by digital modification of the anatomy/behaviour; elements of anatomy to be modified in multiple ways (e.g. removal of teeth/bone) to examine the consequences of different surgical approaches; and for implant devices to be digitally inserted into the models, and their impact on performance examined, all without the need for any harmful experimentation on real animals. But improving biomechanical models will not only reduce animal use in research, but has the potential to improve modelling of human biomechanics. Currently models are used widely to study healthy biomechanics (e.g. sports performance), ageing (e.g. sacropenia) and related diseases (e.g. knee osteoarithitis), dental procedures (e.g. orthodontic treatment) and injury (e.g. hip fracture). In these human studies they are used to estimate or predict parameters that cannot be measured directly in people, thus their accuracy is inherently difficult to assess. Thus there is clear need for the type of study we propose here.
In the first instance we will generate the most comprehensive biomechanical models produced to-date using our exhaustive and state-of-the-art experimental dataset. This will provide a best-case scenario for model accuracy. We will then incrementally reduce the resolution of input data given to the model and observe the effects on accuracy. This will tell us how individual input parameters effect accuracy and help the musculoskeletal research community identify which parameters do not need to be measured through experimentation in real animals to achieve the necessary accuracy.
To do this we will develop and validate new computational biomechanical models using mastication in rabbits as our case study. Validating computer models requires a large amount of experimental data about rabbit anatomy and feeding mechanics (e.g. muscle and bite forces). This data does not exist for rabbits, or indeed any other experimental animal. Therefore a systematic anatomical and biomechanical investigation of rabbit feeding is required in which all the primary determinants of feeding mechanics are measured from a cohort of rabbits. Computational models constructed from medical imaging data of those same rabbits can then be directly and immediately used to improve and validate computer simulations. Only in this way can models be truly validated and their potential for achieving 3Rs in future studies be demonstrated. Our specific objectives are therefore to collect: anatomical and image data on bone and muscle morphology in rabbits; in vivo data on bone motion and muscle physiology as they eat various food types; and combine these data to build and validate new computer models of rabbit feeding biomechanics.
Rabbits have been chosen because they are widely used in a variety of research areas. They are the first-choice experimental animal for dental implant design and bone (re)growth studies because of their size, easy handling and relative similarities to humans in terms of bone composition, healing and anatomy. These experiments, like many in musculoskeletal research, are highly invasive, causing pain and distress to the animals before they are euthanized. A digital model has the potential to completely replace (or maximally reduce) the use of animals in musculoskeletal research and/or medical device design. The anatomy and behaviour of a digital model can be altered and re-tested without limitation and without any harm or distress to a real animal. This can also allow, for example: a model analysis to be extended to a different strain/breed of the same species (or a similar species) by digital modification of the anatomy/behaviour; elements of anatomy to be modified in multiple ways (e.g. removal of teeth/bone) to examine the consequences of different surgical approaches; and for implant devices to be digitally inserted into the models, and their impact on performance examined, all without the need for any harmful experimentation on real animals. But improving biomechanical models will not only reduce animal use in research, but has the potential to improve modelling of human biomechanics. Currently models are used widely to study healthy biomechanics (e.g. sports performance), ageing (e.g. sacropenia) and related diseases (e.g. knee osteoarithitis), dental procedures (e.g. orthodontic treatment) and injury (e.g. hip fracture). In these human studies they are used to estimate or predict parameters that cannot be measured directly in people, thus their accuracy is inherently difficult to assess. Thus there is clear need for the type of study we propose here.
In the first instance we will generate the most comprehensive biomechanical models produced to-date using our exhaustive and state-of-the-art experimental dataset. This will provide a best-case scenario for model accuracy. We will then incrementally reduce the resolution of input data given to the model and observe the effects on accuracy. This will tell us how individual input parameters effect accuracy and help the musculoskeletal research community identify which parameters do not need to be measured through experimentation in real animals to achieve the necessary accuracy.
Technical Summary
This project has two primary goals: (1) to quantify the experimental input data required for musculoskeletal computer models to deliver accurate biomechanical predictions, and (2) provide quantitative data on the current and future potential of computer simulation approaches as an alternative to animal experimentation in basic science, clinical/veterinary and industrial projects involving biomechanics. To achieve this we will use mastication in rabbits as our model system because it is experimentally tractable and will generate data relevant to basic biological science fields and the health and welfare of rabbits. We will collect a wealth of anatomical, in vivo and in vitro experimental data on the rabbit masticatory system. Biplanar x-ray videography will be synchronized with strain gauges, muscle EMG and sonomicrometry and a bite force transducer to simultaneously record 3D motions, muscle dynamics, bone strains and bite forces during feeding. In vitro physiology experiments will quantify muscle mechanics and key contractile properties. Key anatomical variables from the same rabbits will be quantified using dissection, medical imaging and nanoindentation. Initially this data will be used to test hypotheses relating functional adaptations to processing different food types and to understand how tissue level properties translate to overall skull function. But most importantly this data will allow us to build, drive and validate the most comprehensive musculoskeletal computer models produced to-date. Our initial models will thus provide a best-case scenario for simulation accuracy. We will then incrementally reduce or average-out the resolution of input data given to the model and observe the effects on accuracy. This will tell us how individual input parameters affect accuracy and help the musculoskeletal research community identify which parameters do not need to be measured through experimentation in real animals to achieve specific thresholds of accuracy.
Planned Impact
The main impacts of this research programme are on animal welfare, the general public, and the researchers employed on the grant, together with benefits to the academic community (see Academic Beneficiaries).
APPLIED LINKS WITH THE POTENTIAL TO DELIVER ANIMAL WELFARE BENEFITS THROUGH THE 3Rs
Publication and dissemination of computational models will benefit a very wide range of researchers, potentially leading to significant societal impact in terms of improved animal welfare. Through the development of the most robust, validated computer models ever constructed we will facilitate a step change in our understanding of model accuracy and usefulness, and in doing so provide a marker for future musculoskeletal research. Our models will demonstrate how precise (or how species-specific) input parameters have to be to achieve different thresholds of accuracy in terms of predicting an enormous range of muscle and bone parameters. This will directly guide other researchers utilising musculoskeletal models in a variety of contexts, ranging from basic biologists (e.g. functional anatomists, palaeontologists), to applied researchers (clinicians/veterinarians) interested in understanding healthy and "abnormal" biomechanics, through to bioengineers and roboticists developing medical devices and bioinspired robots.
As a direct consequence of this we believe that our models will demonstrate that computer simulation approaches can contribute significantly to achieving the 3Rs in musculoskeletal research, and in surgical and implant design studies that require biomechanical analyses. Experimental studies of this type are highly invasive and typically cause significant pain and distress to the animals before they are euthanized. The approach we will take herein will mean that the potential for future benefits from 3Rs in this context will be broad. By demonstrating how individual anatomical and physiological parameters (e.g. muscle size, contraction behaviour) impact on model accuracy our data will indicate which variables need to be measured directly from cohorts or species of animal in the future and which do not, given the threshold of accuracy for specific model parameters required. In the future, the application of such models will allow some animal experiments to be replaced and in other cases refined and/or reduced as model simulations will allow research efforts involving animal research to be better designed.
THE GENERAL PUBLIC
Animal anatomy and functional morphology are topics that interest the general public, as testified by the continued success of natural history documentaries and recent documentaries like "Inside Nature's Giants." Medical imaging and computational models are powerful and flexible mediums through which to communicate our understanding of the links between anatomy, mechanics and ecology to the general public. Our work will have a positive impact in this respect and demonstrating technological advances and a wide variety of applications of biological research and will have an impact on the general public as a whole, but in particular school children.
OTHER SPECIFIC IMPACTS
The careers of the PDRAs will be developed considerably by involvement in a multi-disciplinary project that integrates physiology, biomechanics and modelling approaches. They will benefit from working closely with laboratories in different leading institutions. The research will also impact on the training of undergraduates carrying out research projects and postgraduates completing MSc/PhD's within our labs.
APPLIED LINKS WITH THE POTENTIAL TO DELIVER ANIMAL WELFARE BENEFITS THROUGH THE 3Rs
Publication and dissemination of computational models will benefit a very wide range of researchers, potentially leading to significant societal impact in terms of improved animal welfare. Through the development of the most robust, validated computer models ever constructed we will facilitate a step change in our understanding of model accuracy and usefulness, and in doing so provide a marker for future musculoskeletal research. Our models will demonstrate how precise (or how species-specific) input parameters have to be to achieve different thresholds of accuracy in terms of predicting an enormous range of muscle and bone parameters. This will directly guide other researchers utilising musculoskeletal models in a variety of contexts, ranging from basic biologists (e.g. functional anatomists, palaeontologists), to applied researchers (clinicians/veterinarians) interested in understanding healthy and "abnormal" biomechanics, through to bioengineers and roboticists developing medical devices and bioinspired robots.
As a direct consequence of this we believe that our models will demonstrate that computer simulation approaches can contribute significantly to achieving the 3Rs in musculoskeletal research, and in surgical and implant design studies that require biomechanical analyses. Experimental studies of this type are highly invasive and typically cause significant pain and distress to the animals before they are euthanized. The approach we will take herein will mean that the potential for future benefits from 3Rs in this context will be broad. By demonstrating how individual anatomical and physiological parameters (e.g. muscle size, contraction behaviour) impact on model accuracy our data will indicate which variables need to be measured directly from cohorts or species of animal in the future and which do not, given the threshold of accuracy for specific model parameters required. In the future, the application of such models will allow some animal experiments to be replaced and in other cases refined and/or reduced as model simulations will allow research efforts involving animal research to be better designed.
THE GENERAL PUBLIC
Animal anatomy and functional morphology are topics that interest the general public, as testified by the continued success of natural history documentaries and recent documentaries like "Inside Nature's Giants." Medical imaging and computational models are powerful and flexible mediums through which to communicate our understanding of the links between anatomy, mechanics and ecology to the general public. Our work will have a positive impact in this respect and demonstrating technological advances and a wide variety of applications of biological research and will have an impact on the general public as a whole, but in particular school children.
OTHER SPECIFIC IMPACTS
The careers of the PDRAs will be developed considerably by involvement in a multi-disciplinary project that integrates physiology, biomechanics and modelling approaches. They will benefit from working closely with laboratories in different leading institutions. The research will also impact on the training of undergraduates carrying out research projects and postgraduates completing MSc/PhD's within our labs.
Organisations
People |
ORCID iD |
| Michael Fagan (Principal Investigator) | |
| Peter Watson (Co-Investigator) |
Publications
Bates KT
(2021)
Back to the bones: do muscle area assessment techniques predict functional evolution across a macroevolutionary radiation?
in Journal of the Royal Society, Interface
Broyde S
(2021)
Evolutionary biomechanics: hard tissues and soft evidence?
in Proceedings. Biological sciences
Broyde S
(2021)
Correction to: 'Evolutionary biomechanics: hard tissues and soft evidence?'
in Proceedings of the Royal Society B: Biological Sciences
Charles J
(2022)
From fibre to function: are we accurately representing muscle architecture and performance?
in Biological reviews of the Cambridge Philosophical Society
Kissane RWP
(2023)
The association between muscle architecture and muscle spindle abundance.
in Scientific reports
Kissane RWP
(2022)
Skeletal muscle function underpins muscle spindle abundance.
in Proceedings. Biological sciences
Kissane RWP
(2024)
The functional role of the rabbit digastric muscle during mastication.
in The Journal of experimental biology
Maher AE
(2022)
Body size, shape and ecology in tetrapods.
in Nature communications
| Description | We collected the most exhaustive anatomical, mechanical and physiological data set on the masticatory system of a single cohort of animals from any species to-date. This data set has and will continue to contribute to publications about the masticatory anatomy and function of the rabbit, which is a key model organism on comparative academic research and the bone implant industry. For example, we have shown that the architecture and function of the digastric is mechanistically linked to its unusually low muscle spindle abundance, supporting the hypothesis that muscles with a low spindle abundance appear to primarily operate as energy absorbers or brakes. In other work, we have shown that rabbits dynamically modulate the temporal kinetics of feeding and recruitment of muscles in order effectively process foods of differing material properties. This data set has also provided a unique basis from which to construct computational models using two separate techniques (multi-body dynamics analysis and finite element analysis), and subsequently judge their accuracy and potential to contribute to the replacement, reduction and refinement (3Rs) of animal use in future musculoskeletal research. We have fully evaluated the predictive accuracy of a subject-specific multi-body dynamics (MDA) model during chewing on different food types in the in-vivo experiments, and during stimulated maximal incisor and molar biting, by comparing model predictions to measured data from the same rabbit. We have also analysed the effect of simplifying the model complexity (e.g. using different methods of muscle modelling) and averaging input data (e.g. replacing subject-specific data with either averaged data from our experimental rabbits and/or literature data) to assess the level of data required for specific accuracy thresholds. This will inform future studies and potentially allow higher levels of 3Rs in the construction of subject-specific models. In parallel to this, we also evaluated the accuracy with which these different model iterations match species-averaged data, thereby evaluating the extent to which generic or species-averaged models might enabled greater 3Rs in future studies. We have measured and analysed the variation of material properties of bone in the rabbit skull. We found the bone properties vary not only in terms of the location in the skull at which they are measured (i.e. front of the skull vs the back), but also in terms of the direction in which they are measured (i.e. they can be measured in one of three axes). For example, the bone properties were found to be lower in one direction, when compared to the other two directions. This will provide a valuable data set that can inform future computational models of the rabbit. We have constructed a high-resolution finite element (FE) model of the same rabbit used to build the MDA model above. We have simulated chewing cycles and evaluated the accuracy of this subject-specific model by combining simulated strains in the cranium to those measured during in-vivo chewing experiments and during stimulated maximal incisor. We have also investigated the influence of the measured bone properties on the outputs of the FEA model. This has provided suggestions for the quantity of the material property input data required (e.g. isotropic vs orthotropic) to obtained specific levels in accuracy of the outputs and thus provide a quantitative basis for 3R-related evaluation in future experimental design. For example, we have shown that isotropic material properties are suitable when investigating general strain distribution, and it best avoid using material properties measured in certain directions. |
| Exploitation Route | Once published and made freely available, our "off the self" computational models can be modified to replicate a range industrial biomedical experiments that observe the cause-effect relationship between the musculoskeletal system and biomechanical loading. The models are directly applicable to experiments that reply on cranial biomechanics as the anatomical system (e.g. dental implant design, biomaterial osseointegration/resorption, effects of tooth loosening and loss, effects of jaw joint disorders). However, the models will be easily modifiable in order to predict muscle/bone adaptations in other anatomical systems and/or species that are commonly used in biomedical experiments. This will supply validated in silico techniques that can initially supplement biomedical experiments, with the real long-term potential to aid industry and academic research in making a significant contribution to reduce, refine and replace animal experiments. The knowledge and understanding of model accuracy that we provide will be directly transferable to other areas of implant and prosthetic design, thus benefiting this industry very widely. Dental disease is one of the most common welfare issues in domesticated rabbits and our experimental data set and computational models will be directly applicable to veterinary research into its causes and progression. This area is currently controversial, but diet and food processing have been identified as an important factor. In the medium-longer term both our experimental and modelling work should inspire similar approaches in other areas of veterinary and animal welfare research. We believe our models demonstrate that computer simulation approaches can contribute significantly to achieving the 3Rs in musculoskeletal research, and in surgical and implant design studies that require biomechanical analyses. Experimental studies of this type are highly invasive, and typically cause significant pain and distress to the animals before they are euthanized. By demonstrating how individual anatomical and physiological parameters (e.g. muscle size, architecture, contraction behaviour) impact on model accuracy, our data indicates which variables need to be measured directly from cohorts or species of animal in the future and which do not, given the threshold of accuracy required. Thus future studies will be able to refine and reduce animal use through computer models on the basis of our data. |
| Sectors | Healthcare Pharmaceuticals and Medical Biotechnology Other |
| Title | ESM - raw data from Regional Variation of the Cortical and Trabecular Bone Material Properties in the Rabbit Skull |
| Description | Material properties of cortical and trabecular bone measured in various locations and directions in the rabbit skull. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | Dataset has enabled the evaluation of the sensitivity of material properties on the outputs of computational biomechanical modelling. |
| URL | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0298621 |
| Title | ESM Raw data from Skeletal muscle function underpins muscle spindle abundance |
| Description | Muscle spindle abundance is highly variable within and across species, but we currently lack any clear picture of the mechanistic causes or consequences of this variation. Previous use of spindle abundance as a correlate for muscle function implies a mechanical underpinning to this variation, but these ideas have not been tested. Herein, we use integrated medical imaging and subject-specific musculoskeletal models to investigate the relationship between spindle abundance, muscle architecture and in vivo muscle behaviour in the human locomotor system. These analyses indicate that muscle spindle number is tightly correlated with muscle fascicle length, absolute fascicle length change, velocity of fibre lengthening and active muscle forces during walking. Novel correlations between functional indices and spindle abundance are also recovered, where muscles with a high abundance predominantly function as springs, compared to those with a lower abundance mostly functioning as brakes during walking. These data demonstrate that muscle fibre length, lengthening velocity and fibre force are key physiological signals to the central nervous system and its modulation of locomotion, and that muscle spindle abundance may be tightly correlated to how a muscle generates work. These insights may be combined with neuromechanics and robotic studies of motor control to help further tease apart the functional drivers of muscle spindle composition. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://rs.figshare.com/articles/dataset/ESM_Raw_data_from_Skeletal_muscle_function_underpins_muscle... |
| Title | ESM Raw data from Skeletal muscle function underpins muscle spindle abundance |
| Description | Muscle spindle abundance is highly variable within and across species, but we currently lack any clear picture of the mechanistic causes or consequences of this variation. Previous use of spindle abundance as a correlate for muscle function implies a mechanical underpinning to this variation, but these ideas have not been tested. Herein, we use integrated medical imaging and subject-specific musculoskeletal models to investigate the relationship between spindle abundance, muscle architecture and in vivo muscle behaviour in the human locomotor system. These analyses indicate that muscle spindle number is tightly correlated with muscle fascicle length, absolute fascicle length change, velocity of fibre lengthening and active muscle forces during walking. Novel correlations between functional indices and spindle abundance are also recovered, where muscles with a high abundance predominantly function as springs, compared to those with a lower abundance mostly functioning as brakes during walking. These data demonstrate that muscle fibre length, lengthening velocity and fibre force are key physiological signals to the central nervous system and its modulation of locomotion, and that muscle spindle abundance may be tightly correlated to how a muscle generates work. These insights may be combined with neuromechanics and robotic studies of motor control to help further tease apart the functional drivers of muscle spindle composition. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| URL | https://rs.figshare.com/articles/dataset/ESM_Raw_data_from_Skeletal_muscle_function_underpins_muscle... |
| Description | Conference Presentation - SVPCA 2021 |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Other audiences |
| Results and Impact | Kissane, R.W.P, Askew, G.N., Fagan, M.J., Watson, P.J., Wang, L. & Bates, K.T. The dynamic role of the rabbit masticatory apparatus during feeding. The Annual Symposium of Vertebrate Palaeontology & Comparative Anatomy (Oxford) 2021. Academic conference presentation attended by >100 international academics. |
| Year(s) Of Engagement Activity | 2021 |
| Description | Presentation at NC3R's event at the University of Liverpool |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Other audiences |
| Results and Impact | Presentation about our computaitonal modelling approach to NC3Rs |
| Year(s) Of Engagement Activity | 2020 |