Cell-cell interactions in the regulation of neural progenitor fate: the role of PCDH19

Lead Research Organisation: CARDIFF UNIVERSITY
Department Name: School of Biosciences

Abstract

The brain is a complex, yet highly ordered structure serving as the control centre for all vertebrates and some invertebrates. In mammals, one region of the brain, designated the cerebral neocortex, is particularly important for elaborate processes such as memory, attention, thoughts, perception and language. Neurons in the mammalian neocortex are distributed in specific layers and have distinct morphological and functional properties. These neurons are generated during development by specific cells, called neural progenitors. These progenitors need to produce the correct amount of neurons for each of the layers, and they do it sequentially. They first produce neurons for the deepest layer, then for the layer on top of that, and so on until all layers are generated. This means that progenitors need to maintain a balance between giving rise to neurons and maintaining their own population, to avoid getting depleted before all neurons are produced. Progenitors can divide in two different ways: symmetrically and asymmetrically. Symmetric divisions produce two identical daughter cells, either two progenitors or two neurons. Asymmetric divisions give rise to two different cells: one progenitor and one neuron. At very early stages in the formation of the cortex, progenitors divide symmetrically to increase their numbers. But at some point they need to change to asymmetric divisions to start producing neurons. How progenitors make this decision is currently not understood.
My laboratory is investigating the mechanisms that control development of the cerebral cortex. We have recently found that one cell-cell adhesion protein, protocadherin 19 (PCDH19), is involved in the regulation of neural progenitor behaviour. PCDH19 is mutated in a human disorder leading to epilepsy and varying degrees of cognitive impairment in very young girls. This molecule is present in neural progenitors around the time of the symmetric to asymmetric division switch. We have found that progenitors with PCDH19 produce neurons at different rates when they are alone than when they coexist with progenitors that lack this protein. The same is true for the PCDH19-deficient progenitors. This suggests that communication between cells is important to regulate progenitor behaviour and that we can use PCDH19 to investigate this process. We will first determine if the changes that we have seen at embryonic day E11.5 are maintained in time and how they affect overall neuronal production. We will then analyse the dividing progenitor cells to find out what makes the progenitors with PCDH19 different from the ones without this protein. Finally, we will use both direct and unbiased approaches to figure out which molecules and signalling pathways are responsible for the differential behaviour between the two progenitor types. We will investigate particular molecular pathways that have been shown to play a role in the maintenance of progenitor cells. At the same time, we will carry out an analysis of all genes expressed by PCDH19-positive and -negative progenitors to assess other potential differences in an unbiased way.
These experiments will provide valuable information to explain how progenitors decide to start producing neurons, but they will also reveal how cell-cell communication influences this process. This information is crucial to understand how brains are formed correctly, an essential knowledge when studying neurodevelopmental disorders.

Technical Summary

Protocadherin 19 (Pcdh19) expressing and non-expressing neural progenitors in E11.5 heterozygous (het) mice brains behave differently from each other and from control brains: progenitors that lack Pcdh19 show higher mitotic index and quitting fraction, producing more neurons at the expense of radial glial cells. This is reversed in Pcdh19-expressing progenitors, which display both lower mitotic index and quitting fraction with reduced neurogenesis. We will use this unique system of Pcdh19 het and control brains to investigate the cellular and molecular mechanisms regulating the switch from symmetric, proliferative divisions to asymmetric, neurogenic divisions during corticogenesis, a crucial but poorly understood step during early brain development. We will first analyse cell cycle parameters at later stages to determine degree of change and consequences on neurogenesis. To investigate the cellular basis of this different symmetric to asymmetric switch (STAS), we will determine cleavage plane angles, cell cycle length, mode of neurogenesis (direct vs. indirect), and endfeet behaviour combining immunohistochemistry, injection of base analogues, live imaging and use of reporter mice. Finally, to reveal molecular determinants of the STAS, we will employ candidate and unbiased approaches. We will investigate the Notch signalling pathway, known to regulate progenitor identity and neurogenesis. This will be achieved by in utero electroporation of reporter plasmids and use of reporter mice strains. RNA sequencing analysis will complement the candidate approach, allowing us to compare the transcriptome of Pcdh19+ and Pcdh19- progenitors in wild type, ko and het animals. The project will benefit from our expertise in cortical development and in utero electroporation. Our results will shed light on how neural progenitors switch their division mode to start neurogenesis and will be relevant for the fields of neurodevelopment, cadherins, and regulation of cell division.

Planned Impact

The beneficiaries from this project will be:

1. Wider public, particularly school pupils
2. Researchers and students directly involved in the project
3. Clinicians working on neurodevelopmental disorders
4. Patients suffering from neurodevelopmental disorders and their families

How will they benefit from it?

1. Wider public and pupils
Policy makers have identified a greater understanding of science and an increased interest in STEM subjects as key factors for the UK's prosperity by (see the policy paper "2010 to 2015 government policy: public understanding of science and engineering"). Neuroscience is an appealing topic to engage with a wider public and to attract students to scientific careers, since it can be approached from a variety of perspectives: medical, biological, engineering, etc. However, scientific results are generally complex and difficult to understand. We will disseminate our research results to the wider public in an easy to understand, visual way, and incorporate them into children-oriented engagement activities to increase the public understanding of science and to raise scientific interest in school-aged children.

2. Researchers and students directly involved in the project
In this project, we will train one postdoctoral researcher, who will acquire specialized technical skills in neuroscience, such as in utero electroporation and RNAseq analysis. In addition, (s)he will also acquire transferable skills like problem solving abilities, time and resource management, presentation of results, networking, etc. This training will increase employability and the chances for the development of a successful career. We also expect MRes students and Final Year students to get involved at different stages of the project. These students will benefit in a similar way as the postdoctoral researcher in terms of acquiring transferable skills that will increase their employability.

3. Clinicians working on neurodevelopmental disorders
Clinicians working on neurodevelopmental disorders will also benefit from our results. Even though the project addresses basic biological questions, the new knowledge that we will generate can be relevant to understand the pathophysiology of EIEE9, a disorder that presents with seizures and cognitive impairment due to mutations in PCDH19. This information should place clinicians in a better position to inform patients about their condition and to develop new treatment strategies for this disease. In addition, a better understanding of progenitor behaviour during corticogenesis will also benefit clinicians working on microcephaly and other disorders in which neuronal numbers are altered.

4. Patients suffering from neurodevelopmental disorders, their families and support groups
Our results will add to the existing knowledge about cortical development and about the function of PCDH19, and they will have potential to identify new candidate genes involved in neurodevelopmental disorders.
PCDH19 has become the second most clinically relevant gene in epilepsy after SCN1A and several groups have been created to support research into PCDH19 epilepsy:
- Pcdh19 Alliance (https://www.pcdh19info.org)
- Pcdh19 France (http://www.pcdh19france.fr/index.html)
- Asociación epilepsia rosa (http://www.pcdh19.net)
- Insieme per la Ricerca PCDH19 - ONLUS (http://www.pcdh19research.org/index.html)
The first way in which we expect our research to benefit patients, their families and patient support groups is by providing them with information to better understand the disease and how mutations in Pcdh19 lead to the different symptoms of the disorder.
In the longer term, our results should contribute to enhance the quality of life of patients and their families, by aiding in the design of better treatment options, in the form of drugs and other types of therapies.
 
Description In aim 1 of the award we wanted to determine if the differences in the behaviour of normal and mutated neuronal progenitors that we had identified during very early stages of cortical development persisted as development progressed. Although we have not been able yet to complete the full analysis due to COVID-related restrictions, our data so far seem to show that the effect is confined to the early stages of development and that it disappears afterwards.

In the last year, we have generated a preliminary analysis of gene expression in wild type and mutant animals that points towards an involvement of a specific signalling pathway in the differences that we see. We have acquired a reporter mouse line that will allow us to investigate that signalling pathway at very early stages of development. In addition, we have generated a new dataset comprising thousands of cells obtained from embryonic brains at the time point when the differences in neurogenesis are most pronounced. This new dataset allows us to identify and isolate the most relevant cell types for our analysis and will provide invaluable insight into any differences at the gene expression level between wild type and mutant cells. Interestingly, this dataset will also allow us to analyse any potential differences between male and female cells at this stage of cortical development. Although this was not an original objective of the grant, it is a relevant research question that we will take the opportunity to investigate.
Exploitation Route It is too early to say how this particular outcome might be taken forward by others, but currently it would be most relevant to other researchers in the field of neurogenesis. In its current state, it would not be relevant for any of the specific sectors listed below.
Sectors Other

 
Description BBSRC International Partnership Award
Amount £7,201 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2023 
End 03/2023
 
Description Four-year PhD Studentships in Science awarded to a member of the team
Amount £75,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2019 
End 09/2022
 
Description How are astrocytes made? Transcriptional regulation of astrocyte specification across development and adulthood.
Amount £17,920 (GBP)
Funding ID 2749990 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2022 
End 09/2026
 
Description Transition project to a member of the team
Amount £2,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 02/2023 
End 05/2023
 
Description UKRI COA Fund
Amount £15,886 (GBP)
Organisation United Kingdom Research and Innovation 
Sector Public
Country United Kingdom
Start 04/2021 
End 07/2021
 
Title E14-Pcdh19-CYTO 
Description The E14 mouse embryonic stem cell line was modified to induce constitutive expression of the cytoplasmic domain of PCDH19. The Rosa26-PCDH19-ICD-HA targeting vector was generated and Zinc Finger Nucleases were used to insert an HA-tagged version of PCDH19's cytoplasmic domain into the Rosa26 locus. Subsequent nucleofection of the targeted ES-cells with a vector expressing Cre-recombinase removed the floxed neomycin selection cassette. Individual clones were sequenced and karyotyped. 
Type Of Material Cell line 
Year Produced 2019 
Provided To Others? No  
Impact This ES cell line allows us to assess the impact of PCDH19's cytoplasmic domain at different stages of development, from neuronal progenitors to young neurons. This domain contains nuclear localisation signals and we believe that it translocates to the nucleus and influences gene expression. By performing RNAseq with this ESC line and its two isogenic controls (wild type E14 ESCs and E14-PCDH19-KO ESCs), we have been able to confirm a gene regulatory role for PCDH19 intracellular domain. 
 
Title E14-Pcdh19-KO 
Description The E14 mouse embryonic stem cell line was modified using CRISPR-Cas9 to eliminate expression of PCDH19. 2 different gRNAs targeting exon 1 were cloned into the pX330-mCherry vector and nucleofected into E14 ESCs. FACS was used to select isolated cells expressing mCherry, which were clonally expanded and genotyped to assess successful CRISPR targeting. Several targeted clones were then karyotyped to rule out chromosomal rearrengements. 
Type Of Material Cell line 
Year Produced 2019 
Provided To Others? No  
Impact This tool is allowing us to assess the impact of loss of PCDH19 at different stages of neuronal development, from progenitors to young neurons. Although we had originally derived ES cells from out PCDH19 KO mice, we did not have an isogenic control for that line, making experiments such as RNAseq more difficult to interpret. With this new cell line, we have been able to carry out RNAseq at progenitor stage with an isogenic control, revealing a particular signalling pathway that might be affected by the loss of PCDH19. 
 
Title Pcdh19-KO MEFs 
Description We have derived mouse embryonic fibroblasts from our PCDH19 KO animals. 
Type Of Material Cell line 
Year Produced 2021 
Provided To Others? No  
Impact These cells have not been published yet, but they are allowing us to investigate the proteolytic processing of PCDH19. 
 
Description ES-KU Leuven 
Organisation University of Leuven
Country Belgium 
Sector Academic/University 
PI Contribution Intellectual input into two grant applications and a manuscript. In the frame of this collaboration, we have submitted two grant applications to the FWO , which were very positively reviewed but were unfortunately not funded. We also collaborated i submitting a BBSRC International Collaboration grant that was funded and is currently active. In addition, we are collaborating by providing intellectual input to their latest manuscript. Through this collaboration, we also have access to newly developed tools (mouse strains).
Collaborator Contribution Intellectual input into two grant applications and a manuscript. In the frame of this collaboration, we have submitted two grant applications to the FWO , which were very positively reviewed but were unfortunately not funded. We also collaborated i submitting a BBSRC International Collaboration grant that was funded and is currently active. Through this collaboration, we also have access to newly developed tools (mouse strains).
Impact BBSRC International Collaboration Grant to establish the iGONAD technique at Cardiff University.
Start Year 2019
 
Description MTC - University of Glasgow 
Organisation University of Glasgow
Department Institute of Neuroscience and Psychology
Country United Kingdom 
Sector Academic/University 
PI Contribution Intellectual input into a BBSRC grant applications and, before that, an MRC DTP application and a successful application to the MRC Harwell GEMM program for the generation of a new transgenic mouse. We are currently awaiting the result of the BBSRC application, which was submitted in September 2022.
Collaborator Contribution Intellectual input into a BBSRC grant applications and, before that, an MRC DTP application and a successful application to the MRC Harwell GEMM program for the generation of a new transgenic mouse. We are currently awaiting the result of the BBSRC application, which was submitted in September 2022.
Impact Successful application to the GEMM programme. Mouse model should be ready this year.
Start Year 2020
 
Description Host for 2 high school students 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Two high school students with an interest in Science joined my laboratory for 3 days to get an idea of what it means to be a scientist. Both were considering pursuing a University degree in a Science discipline (Biology, Biomedicine, etc.). They shadowed the postdoctoral researcher working on the project and also had conversations with me about the work we are doing to investigate PCDH19 function.
Year(s) Of Engagement Activity 2019
 
Description In2Science Lab visits 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact I participated as mentor in the In2Science program. I received online training and then had a student from a disadvantaged background that has an interest in STEM and is planning to pursue a career in a STEM discipline visit the lab for 3 days in summer 2022 . We discuss his plans, motivations, doubts, etc. and I told him about my own scientific careers, successes, failures, etc. He got the opportunity to perform some laboratory work and get exposed to what the life of a scientist is, though conversations with me and another member of the team.
Year(s) Of Engagement Activity 2022
URL https://in2scienceuk.org/
 
Description In2Science Mentorship 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact I participated as mentor in the In2Science program. I received online training and then scheduled 3 mentoring sessions over the summer with 3 young women from disadvantaged backgrounds that have an interest in STEM and are planning to pursue a career in a STEM discipline. We used the sessions to discuss their plans, motivations, doubts, etc. and I told them about my own scientific careers, successes, failures, etc.
The specific impact is hard to judge, but their feedback was that they found the sessions very useful and were glad to hear first hand from someone who has followed a STEM career and to be told that there is room for errors and for changing your mind.
Year(s) Of Engagement Activity 2021
URL https://in2scienceuk.org/
 
Description Provider for a Nuffield Research Placement 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact My laboratory acted as a provider for a Nuffield Research Placement. These placements provide students from low socio-economic backgrounds with the opportunity to engage in a research project over the summer period. We hosted a student for a period of 4 weeks, who worked on the PCDH19 project and then wrote a report and presented a poster at the Nuffield celebration event at Techniquest. The celebration event is attended by the students, their school teachers and family members, and the project providers.
Year(s) Of Engagement Activity 2019
URL https://www.nuffieldfoundation.org/students-teachers/nuffield-research-placements/