Bean Enhance

Lead Research Organisation: National Institute of Agricultural Botany
Department Name: Centre for Research

Abstract

Common bean (Phaseolus vulgaris) is the major legume crop produced in East and Central Africa (ECA) providing a vital source of nutrition and income to millions of small-holder farmers. Unfortunately common bean productivity can be influenced negatively by a range of biotic and abiotic factors. Angular leafspot (ALS), caused by the fungal pathogen Pseudocercospora griseola is a primary cause of yield losses in ECA and outbreaks of the disease can result in nutritional and financial poverty for growers and their families.

Bean Enhance is a translational research project that will exploit established Ugandan pathogenomics resources for the common bean angular leafspot pathogen, aligning them with ongoing disease resistance breeding programmes at CIAT-Uganda and expanding them so local plant pathologists can monitor the movement of isolates in Tanzania as well as Uganda, and to enable plant breeders to test the response to key sources of resistance in order to deploy regionally relevant or more durable varieties in the future. This will allow important ALS isolates to be tracked effectively, allowing growers to make better variety choices to avoid losses to disease. Reductions in disease will contribute effectively to improve socio-economic stability in Tanzania and Uganda by increasing small-holder incomes, and through promoting legumes as a sustainable crop in agricultural rotations.

The project will also develop effective testing and certification procedures for supplying disease-free basic seed to common bean producers through implementing a series of workshops in Tanzania and Uganda to train key actors in the seed production pipeline; this will include members of grower/producer groups, the seed production industry, extensions services and the government to ensure knowledge can be disseminated to the greatest relevant audience and translated to achieve the greatest impact possible.

Planned Impact

The Bean Enhance project will exploit novel pathogenomics resources created previously in BBSRC project Panacea (BB/R015376/1) for tracking movement of the angular leafspot pathogen, Pseudocercospora griseola in Uganda. The project will first extend pathogen surveillance to Tanzania in order to sample and test for additional reservoirs of genetic diversity using a set of differential cultivars to distinguish between different pathogen races to capture isolates and subsequently test them with molecular pathotyping resources developed in Panacea. The new Tanzanian isolates and a selection of typed isolates from the established Ugandan collection will then be screened against a panel of putative resistant lines to identify novel sources of race specific resistance to increase the range of effective controls options to reduce the negative impacts from ALS. Finally, Seed testing and certification procedures will be developed in conjunction with partners at CIAT, NaCRRI and TARI to develop an effecting screening methodology to reduce ALS contamination in seed lots and to empower key stakeholder in the informal l seed production industry to continue to deliver improved, disease-free basic seed in the future. This testing will also be supported through the development of isothermal diagnostics to provide a fast, robust and 'field-able' method to support ALS detection. These activities will contribute effectively to reducing the negative effects on common bean productivity by ALS, helping to improve socio-economic well-being, nutritional status and enhancing sustainable farming practices.

Publications

10 25 50
 
Description Improving farmer/grower knowledge on the production of healthy common bean seed and identifying key pests and pathogens to help prevent further disease outbreaks.
First Year Of Impact 2022
Sector Agriculture, Food and Drink
Impact Types Societal

 
Title Angular Leaf Spot LAMP isothermal diagnostic assay 
Description A LAMP (Loop mediated isothermal amplification) assay has been designed to detect the angular leafspot pathogen Pseudocercospora griseola 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? No  
Impact Provision of diagnostic method for oversea partners for improving disease detection in East African common bean crops 
 
Title Collection of P. griseola isolates from Uganda/Tanzania 
Description Collection of 93 pathotyped P. griseola isolates collected in Uganda and Tanzania 
Type Of Material Biological samples 
Year Produced 2021 
Provided To Others? No  
Impact Novel collection of pathogen isolates for establishing pathogenomics approaches in P. griseola 
 
Title Genome assembly 
Description We have generated a de novo genome assembly for the common bean pathogen Pseudocercospora griseola to expedite genetic studies in East African Angular Leaf Spot populations 
Type Of Material Technology assay or reagent 
Year Produced 2019 
Provided To Others? No  
Impact The assembly has provided a reference for identifying genetic diversity between P. griseola isolates and is facilitating the development of effective pathogenomics resources for conducting monitoring and surveillance of the pathogen to help reduce negative impacts from disease. 
 
Title Ugandan Angular Leaf Spot isolate re-sequencing data set 
Description A collection of more than 50 angular leaf spot isolates have been re-sequenced enabling genetic variation to be compared across the panel 
Type Of Material Technology assay or reagent 
Year Produced 2019 
Provided To Others? No  
Impact This activity has enabled us to determine that the two closely related pathogens causing angular leaf spot are genetically diverse and may represent two separate species. This potential divergence is being followed up now. 
 
Description Presentation at AAB Legume Science and Practice 2 virtual conference: Panacea - Pathogenomics for enhancing food security in East Africa 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presentation on Panacea project and outcomes in Legumes in Africa Session 2
Year(s) Of Engagement Activity 2021
 
Description Training of professional practioners at partner institute 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact A training program was conducted for project partners and collegues at the Tanzanian Agricultural Research Institute, Maruku centre for improving capability in Common Bean disease identification and isolation of pathogens. This helped to improve awareness in accurately diagnosing important diseases and the quality of sampling conducted in the project.
Year(s) Of Engagement Activity 2021