Sustainable Photonic Pigments Made of Bacteria

Lead Research Organisation: University of Cambridge
Department Name: Chemistry

Abstract

Pigments are ubiquitous components of our everyday life as they are used for colouring several materials including paint, ink, fabrics, food and cosmetics. However, the manufacturing process of conventional pigments places a high burden on the environment, as it consumes high energy and resources, among them, irreplaceable petroleum. Moreover, many traditional pigments pose high risks for human health as they contain heavy metals or inorganic particles. Additionally, their production requires hazardous substances and mining for mineral pigments, in particular in developing countries, have devastating effects both for the environment and society.
Our project aims at the development of new bio-based pigments that are sustainable, bio-compatible and easily scalable for mass production. In particular, we want to develop a methodology to exploit bacteria as building blocks for pigments. The vision of this research proposal is to harness the ability of bacteria to show bright colouration as a result of the physical organisation of cells within colonies. Their colouration is therefore not caused by pigmentation, but it is due to sub-micron organisation, which function as photonic crystals reflecting light only at specific wavelengths. This phenomenon is called "structural colour" and is at the base of the colouration of many living organisms (e.g. the peacock feathers or morpho butterfly wings). Depending on the size of the nanostructures, a specific colour is reflected and, depending on the regularity of the patterned areas, the effect can be matte (angularly independent ) or metallic iridescent (strongly affected by the viewing angle).
Recently, in collaboration with the SME Hoekmine BV, under the remit of BBSRC-funded research, we show that we can genetically modify marine flavobacteria. We were able to change their organisation and their motility, thereby altering their interactions with lights. As a consequence, we were able to change their colour and to tune it in the entire visible spectrum from blue to red. The ambition of this proposal is to move forward from this proof-of-concept and produce bio-based commercial pigments to replace synthetic counterparts in paints and beyond. We foresee this bacteria-based pigment production to be entirely bio-compatible as the bacterial strains, all consumables for bioengineering, fermentation, and the supporting substrates are conceived to be safe and fully biodegradable.
The project has the potential to fulfil an ever-growing market and consumer demand of bio-materials, in the effort to establish a more sustainable and circular economy. For this reason, it has received a strong endorsement from a vast network of pigment manufacturers interested in the outcome of this work. Using bacteria to make pigments is indeed very promising for producers, as this strategy is expected to lower costs by producing bacteria in the desired quantities, other than reducing the ecological impact and health risks associated with the synthetic pigments. Also, the produced pigments are expected to present the significant advantage of increased colour stability, as the colouration does not depend on the chemical composition but on the physical properties of the colonies, making the colour very stable against bleaching. Finally, we believe that the methodologies developed in this project pave the way towards the exploitation of bacteria for the fabrication of new bio-based, renewable materials. We foresee these materials to be relevant to several commercial applications beyond the paint and coating sectors (e.g., cosmetics, food additives, and drug delivery) and to have enormous societal and environmental benefits.

Publications

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Narkevicius A (2022) Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films. in Advanced materials (Deerfield Beach, Fla.)

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Parker RM (2022) Cellulose photonic pigments. in Nature communications

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Titirici M (2022) The sustainable materials roadmap in Journal of Physics: Materials

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Van De Kerkhof GT (2022) Polysaccharide metabolism regulates structural colour in bacterial colonies. in Journal of the Royal Society, Interface

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Wang Z (2022) Tuning the Color of Photonic Glass Pigments by Thermal Annealing. in Advanced materials (Deerfield Beach, Fla.)

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Wang Z (2022) Deconvoluting the Optical Response of Biocompatible Photonic Pigments. in Angewandte Chemie (International ed. in English)

 
Description As a result of the work funded by this award, we have been able to formulate hydrogel supporting the growth of structurally coloured bacteria (Flavobacterium IR1) with long colour persistence. We have also been able to produce micrometre size spherical agar beads with encapsulated structural coloured bacteria. With these exciting achievements, it is now possible to encapsulate these bacteria in droplets and to retain their structural coloration. In the future, we expect to be able to fix the coloured colony formed inside the droplet to produce permanent photonic pigments, as a sustainable and environmental-friendly alternative to conventional pigments.
Exploitation Route The outcome of this project might lead at the production of bio-based commercial pigments in the future for the replacement of the synthetic counterparts in paints and beyond. We foresee this bacteria-based pigment production to be entirety bio-compatible as the bacterial strains, all consumables for bioengineering, fermentation, and the supporting substrates are conceived to be safe and fully biodegradable. The project has the potential to fulfil an ever-growing market and consumer demand of bio-materials, in the effort to establish a more sustainable and circular economy.
Sectors Agriculture, Food and Drink,Manufacturing, including Industrial Biotechology

 
Description As the environmental impact of synthetic pigments and scattering enhancers is becoming more and more visible, industries and the private sector became highly interested in using natural materials in every-day products. Therefore, my research activities aiming to exploit natural materials and living organisms for the production of novel photonic-pigments attracted a very large number of companies from small SMEs to medium and large enterprises11. In the last years, I developed a network of industrial advisors and active collaborators, with whom I have discussions (protected with CDA) and material exchange (protected with MTA). This network spans from pigment manufacturers such as BASF, Merck, Clariant, CRODA, Brenntag, ColorLord, Flint Group, ECKART, to end-users such as L'Oreal and Lush. I received three active Impact Acceleration Accounts to peruse some of these collaborations (Domino UK, BASF, Futamura UK).
First Year Of Impact 2016
Sector Manufacturing, including Industrial Biotechology
Impact Types Cultural,Societal

 
Title Research data supporting "Cellulose Photonic Pigments" 
Description Supporting data for the article titled "Cellulose Photonic Pigments". The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article and supplementary information. Spreadsheets are provided as '.xlsx' and '.csv', or as '.txt' for angular resolved spectrosocpy; original images as '.jpg', '.tiff' and '.png'. Nb. The individual tick of the scale bar images corresponds to a spacing of 10 µm. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/337537
 
Title Research data supporting "Deconvoluting the Optical Response of Biocompatible Photonic Pigments" 
Description Supporting data for the article titled "Deconvoluting the Optical Response of Biocompatible Photonic Pigments". The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure or video in the article and supplementary information. Spreadsheets are provided as '.xlsx' and '.csv', or as '.txt' for simulation or model calculation, GPC curves, and dn/dc data; original images as '.CR2, '.jpg', '.tiff', '.bmp' and '.png'. NMR data are provided in zip. Pendant drop data are provided in avi and txt. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/338249
 
Title Research data supporting "Exploiting the Thermotropic Behavior of Hydroxypropyl Cellulose to Produce Edible Photonic Pigments" 
Description Supporting data for the article titled "Exploiting the Thermotropic Behavior of Hydroxypropyl Cellulose to Produce Edible Photonic Pigments". The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article and supplementary information. Spreadsheets are provided as '.xls', '.xlsx' and '.csv', or '.txt'; original or processed images as '.jpeg', '.jpg', '.tif', '.bmp', '.fig' and '.png'. Raw spectra data are provided as '.mat'. Processed data are provided as '.opju'. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/345197
 
Title Research data supporting "Polysaccharide metabolism regulates structural colour in bacterial colonies" 
Description This data supports the publication "Polysaccharide metabolism regulates structural colour in bacterial colonies". It contains folders containing the raw data used to obtain each of the figures in the pages. It contains goniometer data and corresponding Python scripts to process the goniometer data, cryo-TEM images used for size analysis of the cells, light micrographs and Python scripts used for obtaining the power spectral density function, genomic sequencing data for the mutant strains, and photographs of IR1 colonies grown on different media for analysis of the colony diameter over time. Each folder contains a ReadMe file that further explains the contents of the data in that folder. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/335974
 
Title Research data supporting "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films" 
Description Supporting data for the article titled "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films", as published in Advanced Materials (2022). The data is provided within a structured set of folders compressed in zip, each correlating to a specific data type reported in the article and supplementary information. Please see .txt document: Data for "Revealing the Structural Coloration of Self-Assembled Chitin Nanocrystal Films" for further details 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/337870
 
Title Research data supporting "Structurally Colored Radiative Cooling Cellulosic Films" 
Description Electronic supporting Information is available from the publisher (Advanced Science). The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article. Spreadsheets are provided as '.xlsx' or '.txt'; images as '.bmp', '.jpeg', '.tiff' or '.png'. The data include photograph and the results of polarized optical microscopy, UV-VIS spectroscopy, FTIR spectroscopy, goniometer measurement, field test, and SEM. The methods part of the published paper has the detailed description of how the data were generated, collected, and processed. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/338633
 
Title Research data supporting "Tuning the Color of Photonic Glass Pigments by Thermal Annealing" 
Description Supporting data for the article titled "Tuning the Color of Photonic Glass Pigments by Thermal Annealing". The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article and supplementary information. Spreadsheets are provided as '.xlsx' and '.csv', or as '.txt' for GPC and DSC curves, and dn/dc data; original or processed images as '.jpg', '.tiff', '.bmp' and '.png'. NMR data are provided in zip or as '.mnova'. Pendant drop data are provided in avi and txt. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/344150
 
Description Studying structural colour in Flavobacterium Iridescent 1 colonies 
Organisation Hoekmine B.V.
Country Netherlands 
Sector Private 
PI Contribution Study the optical response of the bacterias, We characterise the optics of the bacteria colonies when grown under different conditions. In addition, we experiment on ways to grow the bacteria in 3D (currently they only grow in a film, in 2D).
Collaborator Contribution Hoekmine BV concerns itself with the biological side of the research. They create mutants of the bacteria, to figure out what biological mechanisms cause the self-assembly of the bacteria. In addition, they experiment on the conditions in which the bacteria grow and organise well (which nutrients, temperature etc.).
Impact - The following paper has been published on the work: Johansen, Villads Egede, et al. "Genetic manipulation of structural color in bacterial colonies." Proceedings of the National Academy of Sciences 115.11 (2018): 2652-2657. The work is multi-disciplinary. Hoekmine BV studies the biological questions that arise for these bacteria. We then examine the physical mechanisms that cause the colours. In addition, we use chemistry to construct new matrices to grow the bacteria in 3D.
Start Year 2013
 
Description 2021 Conference on Lasers and Electro-Optics/Europe - European Quantum Electronics Virtual Conferences (CLEO®/Europe-EQEC 2021) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to the general audience about the Interplay between order and disorder in natural photonic structures. The title of my keynote talk was: "Living photonic structures: natural strategies for optical appearance design".
Year(s) Of Engagement Activity 2021
URL https://www.cleoeurope.org/keynote/
 
Description CINMPIS 20th Scientific Meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to general audience on Biomimetics
Year(s) Of Engagement Activity 2021
URL https://portale.unime.it/cinmpis2021/invited-speakers/
 
Description Invited speaker at the Virtual Complex Nanophotonics Science Camp 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I am a member of the Scientific Commitee of The Complex Nanophotonics Science Camp which provides training to early stages researchers in disciplines like biophotonics, plasmonics, bio-sensing, optical imaging, quantum nanophotonics. The format of the Science Camp is meant to break with the conventional schemes to engage the creativity of early-stage scientists and create new scientific connections, fostering critical thinking.
Year(s) Of Engagement Activity 2021
URL https://www.sciencecamp.eu/2021-online-edition/
 
Description Participation to the Nuit Blanche des Chercheur·es with a Workshop on Photonic Structures in Nature 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact With our collaborators at the University of Nantes, we have organised a workshop during the Nuit Blanche de Chercheus where we showed the general public some stricking examples of structural colouration and iridescence in the marine world, including some bacteria of the genus Flavobacteria, which are the main object of the project funded by the award.
Year(s) Of Engagement Activity 2022
URL https://nbc.univ-nantes.fr/edition-2022/ateliers-2022
 
Description Participation to the Science Festival in Genova, Italy, October 2022 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact The Science Festival in Genova is one of the major international scientific events and a fixed point of reference for science dissemination.
It was a great opportunity for my team members to meet other researchers, science enthusiasts, schools and families
At the 2022 edition we have organised both a workshop and a talk to show the general public some stricking examples of structural colouration and iridescence in the marine world, including some bacteria of the genus Flavobacteria, which are the main object of the project funded by the award.
Year(s) Of Engagement Activity 2022
 
Description Talk at Conference on Functional Polymeric Materials; Exploring towards Green and Sustainability 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to the general public on Biomimetics
Year(s) Of Engagement Activity 2021
URL https://erp.iitkgp.ac.in/InfoCellDetails/resources/external/cepdata?course_id=CEP/CSC/21-22/RT/2275
 
Description Talk at OSA Advanced Photonics Congress 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact The conference focused on the modeling, design, synthesis, assembly and patterning of optical materials, new optical behavior emerging in these materials, and novel optical devices and applications, including imaging systems, lasers, LEDs, nanoscale devices, quantum photonics, bioinspired optics, biophotonics, waveguides and fibers, sensors, detectors, biomimetic materials, and other new and emerging areas. The title of my talk was "Biomimetic Colour Engineering form Nature to Applications".
Year(s) Of Engagement Activity 2021
URL https://www.optica.org/en-us/meetings/osa_meeting_archives/2021/novel_optical_materials_and_applicat...
 
Description Talk to ACS Spring Meeting in San Diego, CA- Anselme Payen Award Symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact The talk was delivered by a member of my team in the Anselme Payen Award Symposium,which gathers all scientists conducting research in the field of cellulose. The talk sparked great interest in the audience and quesions and follow-up discussions and interactions.
Year(s) Of Engagement Activity 2022
 
Description Talk to MNE2021 Micro and Nano Engineering Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to the general public on Biomimetics
Year(s) Of Engagement Activity 2021
URL https://www.mne2021.org/
 
Description Talk to Nature Conference 'Bio-Inspired Nanomaterials' 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to the general public on Biomimeitcs
Year(s) Of Engagement Activity 2021
URL https://conferences.nature.com/event/cf8c2a8d-ed7a-44db-89f7-3eaee2a6f7bd/websitePage:4a9f1ae7-fd5e-...
 
Description Talk to Winter school SMART SINTHER SCHOOL Cambridge 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Talk to the general public on Biomimetics
Year(s) Of Engagement Activity 2021
URL http://smartsummer.eu/speakers/