Understanding the molecular determinants of bee sensitivity to pesticides

Lead Research Organisation: UNIVERSITY OF EXETER
Department Name: Biosciences

Abstract

Bees are among the world's most environmentally and economically important group of insects, pollinating a remarkable diversity of flowering plants and playing a key role in the production of a wide range of food and commodity crops. However, while carrying out this ecosystem service bees can be exposed to a variety of potentially harmful toxins. These include both natural compounds, such as the defensive chemicals produced by plants, and synthetic compounds such as pesticides. Bees are often considered to be highly sensitive to such toxins, however, they have evolved sophisticated metabolic systems to detoxify many of the natural toxins encountered in their environment. Our recent work on four managed bee species has shown that these biotransformation pathways can also protect bees against certain synthetic insecticides. Specifically, we showed that a small number of bee enzymes belonging to the cytochrome P450 superfamily can efficiently detoxify certain insecticides. However, not all bee species have such P450 enzymes, and we have shown that one species of leafcutter bees that lacks them is thousands of times more sensitive to certain insecticides than other managed bee species that have them. This finding has significant implications for the safe use of insecticides, and thus it is now imperative to understand which species of bees have P450 enzymes that provide protection against certain insecticides and which do not.

This project will address this knowledge gap by harnessing the dramatic increase in genome and transcriptome sequences available for bees to understand the evolution and function of key cytochrome P450 enzyme families in this group of insects. In the first objective of the project we will use a comparative genomic approach (comparing the complement and relationship of P450s in different bee species) to predict which bee species have P450s that are preadapted to detoxify certain insecticides. These predictions will be tested by functionally expressing candidate bee P450s in the laboratory and examining their capacity to detoxify insecticides. Our preliminary work on a managed solitary bee species has identified significant genetic variation in the genes encoding the P450s that metabolise certain insecticides, however, the consequences of this on bee sensitivity to insecticides is unclear. Thus, the second objective of the project will identify genetic variation in insecticide metabolising P450s in a model solitary and social bee species. The consequences of this genetic variation on the ability of the encoded P450s to detoxify insecticides will be established using our functional pipeline. The work conducted in Objective 1 and 2 will provide an extensive dataset on the efficiency of different bee P450 enzymes in metabolising insecticides. In the third objective this will be leveraged to understand why certain P450s can metabolise insecticides but not others. We will identify amino acid residues in bee P450 enzymes that are critical in determining insecticide metabolism and the key structural groups of insecticide chemistry they interact with.

The data generated in this project will fundamentally advance our understanding of the evolution of P450 enzymes in bees, and will have significant applied impact in relation to safeguarding bees from potentially harmful pesticide exposure. A key outcome of the project will be the development of a robust framework that can be used to predict the sensitivity of bee species to existing and future insecticides. This is of value as it can be used to identify pesticide use that poses high risks to bees, and will directly inform the development of more accurate pesticide risk assessment frameworks. Finally, the knowledge and tools generated in the project will greatly accelerate the development of next-generation bee-safe insecticides.

Technical Summary

Pesticides continue to play a key role in modern agriculture by controlling plant pests and diseases and securing quality and yield in plant production. However, there is an urgent need to ensure that non-target organisms such as bee pollinators are not harmed by existing pesticides, and develop new compounds that show high efficacy against crop pests but low toxicity to non-target beneficial insects. We have recently demonstrated that some managed bee species have P450 enzymes that provide strong protection against certain insecticides. However, we have also shown that these enzymes are not ubiquitous across all bee species, and that species that lack them can be several orders of magnitude more sensitive to certain insecticides. Thus it is now imperative to understand which species of bees have P450 enzymes that can detoxify insecticides and which do not. This project will meet this need by characterising the evolution and function of key P450 subfamilies in bees and developing a robust framework that can be used to predict the sensitivity of bee species to existing and future insecticides. We will use genomic and functional approaches to: a) Understand how P450s involved in detoxification have evolved across bee pollinators, and which bee species encompassing key bee genera have P450s that metabolise insecticides, b) characterise the level of genetic variation in key P450 subfamilies within model bee populations and how this affects insecticide metabolism, and c) identify key structure/function determinants of bee P450/insecticide interactions, i.e. which amino acid residues in bee P450s are critical in determining insecticide metabolism and which structural groups of insecticide chemistry they interact with. The knowledge generated will allow us to predict and avoid negative outcomes of pesticide use, inform the development of robust pesticide risk assessment frameworks for bees, and facilitate the development of next-generation bee-safe insecticides.

Publications

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Description Bee pollinator pesticide risk assessment is a regulatory requirement for pesticide registration and is largely based on experimental data collected for surrogate species such as the western honeybee. Recently, CYP9Q3, a honeybee cytochrome P450 enzyme, has been shown to efficiently detoxify certain insecticides such as the butenolide flupyradifurone and the neonicotinoid thiacloprid. In this project we analyzed genomic data for 75 bee species and demonstrated by the recombinant expression of 26 CYP9Q3 putative functional orthologs that this detoxification principle is an evolutionary conserved mechanism across bee families. Functional analysis of 26 P450s from 20 representative bee species revealed that P450-mediated detoxification of certain systemic insecticides, including the neonicotinoid thiacloprid and the butenolide flupyradifurone, is conserved across all major bee pollinator families. However, our analyses also reveal that CYP9Q-related genes are not universal to all bee species, with some Megachilidae species lacking such genes. Thus, our results reveal an evolutionary conserved capacity to metabolize certain insecticides across all major bee families while identifying a small number of bee species where this function may have been lost. Furthermore, they illustrate the potential of a toxicogenomic approach to inform pesticide risk assessment for nonmanaged bee species by predicting the capability of bee pollinator species to break down synthetic insecticides.

Many plants produce chemical defense compounds as protection against antagonistic herbivores. However, how beneficial insects such as pollinators deal with the presence of these potentially toxic chemicals in nectar and pollen is poorly understood. In this project, we characterize a conserved mechanism of plant secondary metabolite detoxification in the Hymenoptera, an order that contains numerous highly beneficial insects. Using phylogenetic and functional approaches, we show that the CYP336 family of cytochrome P450 enzymes detoxifies alkaloids, a group of potent natural insecticides, in honeybees and other hymenopteran species that diverged over 281 million years. We linked this function to an aspartic acid residue within the main access channel of CYP336 enzymes that is highly conserved within this P450 family. Together, these results provide detailed insights into the evolution of P450s as a key component of detoxification systems in hymenopteran species and reveal the molecular basis of adaptations arising from interactions between plants and beneficial insects.
Exploitation Route Our research demonstrates the power of phylogenomic and syntenic analysis of genomic data to identify bee P450 genes that are putative functional orthologs of known insecticide metabolizers. With the exponential increase in genomic data being generated for insects, including bees, this approach has immense potential to inform future pesticide risk assessment and avoid negative bee-pesticide interactions. Specifically, we envisage these approaches having utility to: 1) explore the appropriateness of surrogate bee species in current risk assessment frameworks, 2) inform decisions on which bee species should be prioritized for toxicity testing, 3) predict and avoid negative outcomes of pesticide use on bees, and 4) facilitate the rational design of future insecticides.
Sectors Agriculture

Food and Drink

Chemicals

 
Description The knowledge generated by this project has strong potential to both inform pesticide risk assessment and underpin the development of tools and resources that can be used to identify and mitigate negative pesticide-insect interactions. Our research has informed the European Food Safety Authoritie's (EFSA) recent review of its guidance document on the risk assessment of plant protection products on bees, stating that "Among the lines of research focusing on mechanistic explanation of the toxicity, developments of methods investigating the genetic and molecular basis of inter-species sensitivity [] are particularly promising" (https://doi.org/10.2903/j.efsa.2023.7989).
First Year Of Impact 2023
Sector Agriculture, Food and Drink,Chemicals
Impact Types Policy & public services

 
Description Bayer CropScience 
Organisation Bayer
Department Bayer CropScience Ltd
Country United Kingdom 
Sector Private 
PI Contribution We have collaborated with Bayer CropScience on a number of projects and brought our expertise in insect molecular biology and particularly insect transcriptomics and genomics to joint projects.
Collaborator Contribution Bayer CropScience contributed their expertise in the field of insecticide resistance and the functional expression and characterisation of insect detoxification enzymes. They have also contributed financially to joint research projects.
Impact doi: 10.1111/j.1365-2583.2011.01105.x. doi: 10.1073/pnas.1314122110 doi:10.1016/j.ibmb.2014.05.003
Start Year 2010