Generation, characterisation and application of SARS-CoV-2 protein antigens for COVID-19 rapid diagnostic purposes in the hospital and community

Lead Research Organisation: University of Kent
Department Name: Sch of Biosciences

Abstract

We aim to generate a range of stably transfected cell lines to help meet the demand for quality-verified recombinant SARS-CoV-2 structural proteins, which are desperately needed, and which we will use, to help in the development of diagnostics and vaccines. In so-doing our project will complement and expand the repertoire of proteins available on the COVID-19 Protein Portal. The platforms we establish will also be perfectly positioned for the rapid generation of other targets in the future. We will produce these in two different mammalian expression systems, CHO and HEK293 cells, characterise these by mass spectrometry and undertake glycosylation analysis of the Spike glycoprotein. In producing non-glycosylated forms of the protein for comparison, we will define the importance of this post-translational modification for folding, assembly of the trimer form and the ability of the protein to detect anti-spike antibodies from recovered COVID-19 patients. The recombinant authentic and characterised forms of the SARS-CoV-2 proteins will be assessed in diagnostic assays in development with our industrial partner Mologic, and in ELISA assays in the East Kent Hospital Trust at Ashford to profile antibody responses across recovered COVID-19 patients. The proposed research will address the WHO 'coordinated global research roadmap 2019 Novel Coronavirus Global Research and Innovation forum' that stipulates the need for reagents that support the development of 'reliable serological testing as well as assays that monitor response and midterm support development of diagnostic products to improve clinical processes to contribute to control/point of care' and for development of vaccines.
 
Description We have contributed to the unravelling of the role of key sugar resides on the SARS-CoV-2 spike protein on the biology of the virus and how this many impact the immune repose during infection and when the protein is part of a vaccine programme. We have also found ways to improve the expression of proteins from the virus that can be used in diagnostics and vaccines - providing Spike and nucleocapsid protein to other groups for use in diagnostic developments and vaccine developments.
Exploitation Route The SARS-CoV-2 proteins we have made can be used by others in their studies, particularly for diagnostic and vaccine development.
Sectors Education,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL https://blogs.kent.ac.uk/biosciences/2020/06/05/eastern-arc-podcasts-on-covid-19-research/
 
Description We have described, via Zoom and Teams, to a number of different groups the design of constructs for the synthesis of, and subsequent production of a number of SARS-CoV-2 proteins that are being used as antigens in diagnostic tests and incorporated into vaccine programmes. We have described the approach we have taken to generate these proteins, using both mammalian cells and E.coli cells, the purification and characterisation of these. Alongside this we have detailed the role these play in the virus and why these are important proteins fro diagnostic and vaccines purposes. As part of the work we have also explained the differences between PCR based tests and antigen/protein based tests for SARS-CoV-2. Collectively this has helped developed a greater understanding of the different diagnostic tests, the need and role of different reagents, how the tests work and what they detect. How such proteins can also be used was vaccines and how this relates to the currently approved vaccines has also been discussed. From this work additional research has been undertaken, and is in planning, to develop diagnostics for other viruses and infections, as well as for a number of chronic diseases with clinicians using the approaches developed under this award.
First Year Of Impact 2020
Sector Education,Healthcare,Pharmaceuticals and Medical Biotechnology
Impact Types Societal

 
Description Establishment of mammalian cell expression systems for the production of essential low cost protein reagents for development of rapid diagnostics
Amount £254,948 (GBP)
Funding ID 75128 
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 01/2021 
End 12/2023
 
Title SARS-CoV-2 recombinant proteins 
Description We have produced and made available recombinant SARS-CoV-2 proteins for others to use in their research. We will soon be making these more widely available through the protein portal. 
Type Of Material Biological samples 
Year Produced 2020 
Provided To Others? Yes  
Impact Availability of recombinant proteins as cost for others to use in SARS-CoV-2 research. 
 
Description Collaboration with Prof James Stewart, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution We have provided SARS-CoV-2 Spike and nucleocapsid proteins that Prof Stewart has used as part of generating antibodies to these proteins fro research studies. He has also used these proteins, conjugated to outer membrane vesicles (OMV) and in collaboration with Prof Simon Carding at the Quadram Institute (Norwich) to test the development of vaccines against SRS-CoV-2 that can be administered nasally.
Collaborator Contribution At Liverpool the OMV-spike conjugated proteins have ben tested fro their ability to produce anti-spike antibodies and protect an animal model against SARS-CoV-2 infection.
Impact Outputs outstanding, work still in progress.
Start Year 2020
 
Description Collaboration with Prof Simon Carding, Quadram Institute, Norwich. 
Organisation Quadram Institute Bioscience
Country United Kingdom 
Sector Academic/University 
PI Contribution We have provided recombinant SARS-CoV-2 spike protein and nucleocapsid to Prof Carding's group and conjugated these to outer membrane vesicles (OMVs) for them so that they can elevate the potential of these as vaccines against SARS-CoV-2.
Collaborator Contribution Prof Carding has been assessing the ability of immune responses to the OMV-spike or OMV-nucleocapsid proteins and the potential of these to act as vaccines against the virus. They have also investigate macrophage uptake of these.
Impact Still on-going.
Start Year 2020
 
Description Mologic collaboration 
Organisation Mologic
Country United Kingdom 
Sector Private 
PI Contribution We have produced recombinant SARS-CoV-2 proteins as antigens (spike protein and mutations thereof, nucleocapsid protein) that have been provided to Mologic. This involved recombinant expression and subsequent purification.
Collaborator Contribution Mologic have used the reagents to help develop their rapid lateral flow diagnostics for antibodies to SARS-CoV-2 and in development of antigen tests.
Impact Work still on-going, died development of rapid lateral flow tests for SARS-CoV-2 antibodies and antigens.
Start Year 2020
 
Description Imperial College Video on COVID Research 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Video outlining the on-going work on COVID-19 research at Imperial that includes work funded by this project for Royal Society of Biology.

Work from this grant described between 11-14 mins.
Year(s) Of Engagement Activity 2020
URL https://www.youtube.com/watch?v=Hs3tsy_5d3A
 
Description News story on different SARS-CoV-2 tests 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Described different test for SARS-CoV-2.
Year(s) Of Engagement Activity 2020
URL https://www.kent.ac.uk/news/covid19/25529/explainer-what-are-the-three-covid-19-tests
 
Description Open day lab tours and research presentation 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Visit into research lab and discussion around development of vaccines and biotherapeutic proteins for the treatment of disease. Demonstrations of laboratory experiments and question and answer sessions.
Year(s) Of Engagement Activity 2022
 
Description Podcast description of SARS-CoV-2 tests 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Podcast interview describing the different types of test for SARS-CoV-2.
Year(s) Of Engagement Activity 2020
URL https://easternarc.ac.uk/podcasts/episode-4-testing-for-covid-19/
 
Description Prof Haslam YouTube 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Prof. Haslam discussed aspects of the COVID work in The Royal Society of Biology and ITN Produced film "Biology For the Future" (https://www.youtube.com/watch?v=Hs3tsy_5d3A). In this film Prof Haslam explains the spike protein of the virus and the glycosylation of this, detailing why it is important to understand the glycosylation profile of recombinant forms of the protein as well as the general characterisation of SARS-CoV-2 structural proteins.
Year(s) Of Engagement Activity 2021
URL http://www.youtube.com/watch?v=Hs3tsy_5d3A
 
Description Sarah M Films on COVID Vaccines and Diagnostics 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Sarah Martin, a PDRA employed on the grant, was part of a series of short films made at Kent released on aspects of SARS-CoV-2 vaccine development and diagnostics.
Year(s) Of Engagement Activity 2021
 
Description Vaccine practical workshop with local schools 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Workshop to express a nano body against the RBD domain of the Spike protein of SARS-CoV-2 and explaining how can be used in diagnostic development.
Year(s) Of Engagement Activity 2023