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A globally unique 19F, 13C, 15N NMR system to enable frontier bioscience

Lead Research Organisation: University of Bristol
Department Name: Chemistry

Abstract

We use a technique called Nuclear Magnetic Resonance spectroscopy (NMR) to study the structure of biomolecules that form the intricate machinery of cells and organisms. Their structure determines how they work and interact with each other and forms the basis of considerable human effort in understanding cutting edge bioscience.

We are proposing to purchase the world's first TXO-HF NMR cryogenic probe technology and use it to make ground-breaking discoveries in areas such as neurodegenerative conditions like Parkinson's disease, design the structure of new biomolecules, or the production of antiviral, antibiotic and antifungal compounds. We can also use this new NMR data to design or repurpose drugs to make them more potent and even look at what happens to next generation drugs when your body tries to metabolise them. We have already identified >£30m of funded research programs, national collaborations and doctoral training programs that this instrument will underpin from day one, and we are working with a range of national networks who will allow us to increase this substantially over the lifetime of the NMR instrument.

The new probe will enable this research because NMR shares the same basic ideas as the whole-body MRI scanners that are found in hospitals. However when studying molecules in bioscience, it is difficult to get enough sample to detect with our NMR spectrometer and the 'standard' atomic nucleus that MRI studies (the proton), tends to be so abundant that it gives very 'noisy' spectra with too many signals for us to be able to interpret.

The solution to these problems is to use an NMR 'cryoprobe' that has very sensitive detection and is optimised to look at other types of atomic nuclei that tend to give more spread-out signals. Some NMR systems have started to use carbon and nitrogen nuclei, but what makes this TXO-HF system we are going to install especially powerful is that it can also use a further nucleus, fluorine, that is uniquely powerful as a probe because it is rare in most natural systems. This means we can use cutting-edge biosynthetic techniques to introduce fluorine into the molecules we study and then follow it's behaviour without all of the background noise that is found with proton-based NMR and thus study some very difficult problems in biology.

There are many more important and complex scientific questions to answer with this new equipment and to do this we have teamed up with many partner universities, national NMR network programs and biopharmaceutical companies. By bringing all of these different groups together we are ensuring we maximise the number of people and have a broad expertise that can be applied to the scientific challenges we face. As the national picture of how universities work together evolves, sharing (expensive!) unique and sophisticated equipment like this becomes ever more important. Therefore part of what we are seeking to do with this equipment is use it as an exemplar to encourage collaboration and training for our skilled research technical professionals who run these instruments, as well as to inspire the students who themselves will go on to be the bioscience researchers and NMR spectroscopists of the future. To do this we have engaged with a dedicated team who champion this idea and through which we hope to make the equipment even more impactful and sustainable.

Technical Summary

Ultrahigh-field magnets (1GHz) satisfy some of the escalating demands of biological NMR but do not circumvent many of the underlying problems with traditional 1H-detection used by most NMR technologies. Instead, the key to addressing many of these challenges is the observation of 13C, 15N AND 19F nuclei. Recently developed direct observe (TXO) cryoprobes have partially addressed this with a leap in 13C/15N sensitivity to enable otherwise impractical NMR techniques. However, the increasingly key role of 19F in bioactive molecules requires a new approach.

We will install the world's first cryoprobe which introduces 19F to TXO technology. 19F is more NMR-sensitive than 13C/15N and provides better spectroscopic resolution due to a low natural abundance in biological systems. Combined into one probe, the next generation 'TXO-HF' will enable the UK to tackle bioscience challenges of the future.

The system will be integrated with the collaborative, cross-disciplinary environment of the University of Bristol NMR Facility. The investigators, who lead this facility, are widely recognised as pioneers in providing open access to NMR technology and they serve >200 multi-disciplinary researchers regionally and nationally studying a wide range of scientific problems across BBSRC's remit. We have already identified ~20 collaborators wishing to use the TXO-HF on existing scientific challenges, underpinning >£30M of funded research from day one. We are active participants in several national networks of NMR scientists and they would engage with us to maximise the impact of the TXO-HF to the widest range of UK science.

Such high-end instrumentation is critically reliant on the expertise of the Research Technical Professionals (RTPs) who operate it and train its users. Consequently, this proposal includes substantial training and outreach opportunities for RTPs and research students across GW4 and UK landscape to ensure that future experts in NMR are developed and supported.

Publications

10 25 50
 
Description This is a broad equipment grant that has contributed to multiple areas spanning antibiotic biosynthesis, drug metabolism and the design of new synthetic versions of common antibiotics like vancomycin.
Exploitation Route As an equipment grant this underpins numerous studies, evidenced by extensive publication. Many of the equipments impacts are challenging to track as it is used by multiple users and contributes in so many ways. However it is established that as predicted this new capability has enabled molecular characterisation and approaches across many group in Bristol and the UK.
Sectors Chemicals

Education

Environment

Manufacturing

including Industrial Biotechology

 
Description IMPACT Industrial Impact and Synergy. For academic industrial impact and synergy, we continue to act as a GW4 hub for NMR as well as using expertise and instrument time to support the flourishing new biotech sector that is developing in the South West. This is maximising efficiency and sustainability and will help generate considerable future impact for the UK if this trend continues and we grow this close academic/industrial synergy in this area. In 2025-2026 we had 5 companies make use of the NMR instrument . Samples ranged from standard protons to 13C spectra on limited amounts of material (~250-1000ug levels) to high-throughput 19F qNMR studies. Carbometrics that are situated at Science Creates incubator site in St Philips, Bristol, access our instrument and expertise for non-routine data acquisition. We have also strengthened links with Dr Reddy's and have initiated more involved data analysis and formal collaboration that is building a pipeline of new potential projects and synergies. The Butts/Aggarwal group have been heavily making use of this instrument as part of studies that synergize spectroscopy, computation and chemical synthesis to elucidate the 3D structures of complex natural and synthetic compounds. In particular utilising the cutting edge NMR pulse sequences enabled by the console and cryoprobe to maximise the amount of NMR spectroscopic data that can be extracted from chemical samples. These studies are now identifying much more efficient NMR-based analyses of chemical structure, enabling characterisation of certain structural features in minutes rather than weeks of analysis. The Butts group is using data measured using cutting-edge NMR methods (PSYCHEDELIC, IPAP-HSQMBC) to extract large datasets of NMR parameters which are being used in the development of machine learning tools for chemical structure prediction. This could lead to the world's first practical machine learning system for elucidating chemical structures directly from experimental spectra in milliseconds - something that currently can take days, weeks or even years of time from expert scientists. For the Rochat group, Innovative photoresponsive hydrogels have been developed, enabling advancements in soft robotics and digital information storage. Characterized through microindentation, the new photo-stiffening and photo-softening hydrogels utilize unique crosslinking methods. Their integration allows the design of soft actuators controlled by UV light, paving the way for versatile applications in multiple fields. Accessing the NMR facility, especially the 600 MHz instrument, was critical to characterise the complex molecular structure of the materials investigated, and to understand their structure/activity relationships. (eg J. H. Park, P. J. Grimes, H. E. Symons, N. Braidotti, S. Rochat, M. S. Workentin, P. Gobbo, Photochemical Patterning and Characterization of Mechanical Properties on Soft Materials. Adv. Funct. Mater. 2024, 2416095. https://doi.org/10.1002/adfm.202416095). For the Clayden group, Use of NMR spectroscopy to study molecules of interest in the membrane phase brings unique challenges but is critical to realise the future potential of these membrane bound switches. Firstly, 1H and 13C NMR analysis is typically prohibited because the 1H and 13C NMR spectra are dominated by peaks for the lipid and buffer because the concentration of these components far exceeds the concentration of the molecule of interest. Additionally, since lipid aggregates are formed in aqueous solution, it is imperative that the conformation of the molecules of interest can be studied above 5 °C in order to avoid freezing of the solutions under analysis. In light of these requirements, fluorine probes were incorporated into ethylene-bridged oligo(thio)ureas in the hope that this would allow solution-state 19F NMR spectroscopy to be used to study the conformational behaviour of these systems in compartmentalised membrane environments. Fluorine is absent from the lipid molecules and buffer components (other than KF) used to suspend lipid aggregates and this means that 19F NMR spectra only contain peaks for the fluorine environments in the ethylene-bridged oligo(thio). By running spectra at high field, we were able to resolve individual conformers at 5 °C, a temperature at which is membrane and micelles are stable. This allowed us to carry our solution-state 19F NMR studies of artificial biomimetic dynamic foldamers embedded into intact compartmentalised membrane environments, such as vesicles and micelles. Publications on this work are in preparation.
First Year Of Impact 2023
Sector Chemicals,Manufacturing, including Industrial Biotechology
Impact Types Economic

 
Title CCDC 2235848: Experimental Crystal Structure Determination 
Description Related Article: Sayad Doobary, Andrew J. D. Lacey, Stephen G. Sweeting, Sarah B. Coppock, Henry P. Caldora, Darren L. Poole, Alastair J. J. Lennox |2024|Nature Chemistry|16|1647|doi:10.1038/s41557-024-01561-6 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc2f1l47&sid=DataCite
 
Description Collaboration with HyphaDiscovery 
Organisation Hypha Discovery
Country United Kingdom 
Sector Private 
PI Contribution We have expanded our portfolio of state of the art experiments we can apply from studies aimed at analysing the pharm-kinetics of drug like molecules.
Collaborator Contribution We work with a UK company HyphaDiscovery and offer unique NMR services based on the new NMR instrumentation. This builds on previous ties with Hypha who have quickly expanded as a valuable UK start-up company.
Impact We are seeing an expansion of our collaborative effort with the company for example now taking PhD placement students and providing exemplars of academic-industry collaboration. The company has rapidly grown driven in part by the pairing of their unique technology with what we offer.
Start Year 2016