Development of novel broad-spectrum antiviral compounds for use in animals and humans

Lead Research Organisation: University of Nottingham
Department Name: School of Veterinary Medicine and Sci

Abstract

The current pandemic highlights the need for effective antivirals to treat active infections, in conjunction with vaccines, to prevent infection. We recently made an important discovery of a highly effective broad-spectrum antiviral thapsigargin (TG), a specific inhibitor of the Ca2+ pump located on the cellular organelle endoplasmic reticulum (ER), that could be a game changer in the treatment of major human respiratory viruses: coronavirus (including SARS-CoV-2 that causes COVID-19), influenza virus and respiratory syncytial virus (RSV). TG's host-centred mechanism of action, as opposed to conventional direct acting antivirals, reduces the likelihood of drug resistant mutants emerging, a distinct advantage for treating highly mutable RNA viruses. Coronavirus, influenza virus, and RSV are also global pathogens of animals (including cattle, pigs and poultry). Antiviral development for livestock lags behind its human counterpart, despite its potential benefits of safeguarding animal health and productivity. Given that future pandemics are likely to be of animal origin, where animal to human (zoonotic) and reverse zoonotic (human to animal) spread take place, antivirals, such as TG and its derivatives, could play a key role in the treatment and control of important viral infections in both humans and animals.

Thus, our goal in this proposal is to enhance the impact and commercial significance of TG through the generation of novel secondary derivatives with greater antiviral potency for animal and human use. We have established that TG is orally active as an antiviral, and that it is converted into a limited number of ester hydrolysis and side chain oxidation metabolites. We hypothesise that one or more of such TG metabolites are novel structures with enhanced antiviral activity. To this end, we propose to carry out detailed in vivo pharmacokinetics (PK) analyses of TG to fully determine its metabolites post-absorption, synthesise the main metabolites identified, and characterise the synthesised metabolites for antiviral activities to generate comprehensive cellular PK and antiviral data of the most promising TG derivative(s) for clinical development and commercial exploitation. TG and its derivatives represent a whole new generation of powerful host-centred antivirals (as opposed to conventional antiviral drugs that directly target viruses) that could be adopted in a holistic "One Health" approach to control human and animal viruses. The outcomes of this project could have far-reaching impact on a global scale in the treatment and control of RNA viral infections of human and animal importance.

Publications

10 25 50
 
Description We have generated a group of novel antivirals based on the structure of thapsigargin (TG) that can be readily extracted from Thapsia giganica seeds and chemically modified by standard organic chemistry. These TG analogues (about 100 so far) show a spectrum of antiviral, biological and chemical properties. Some analogues are highly effective against one or two virus types; others display broad-spectrum antiviral potency that is similar to founder TG but have differences in certain chemical and biological properties, such as in solubility, relative lack of cytotoxicity and lack of induction of endoplasmic reticulum stress. We are currently exploring their antiviral applications on major human and veterinary viruses.
Exploitation Route Novel TG-based antiviral analogues are the subjects of detailed analysis with the view of making a new patent filing in the near future.
Sectors Pharmaceuticals and Medical Biotechnology

 
Description Medical and veterinary antiviral development
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
 
Description MRC-IAA: Pharmacokinetics and anti-influenza efficacy of promising antiviral analogues of thapsigargin benchmarked against oseltamivir (Tamiflu) and baloxavir (Xofluza)
Amount £74,585 (GBP)
Funding ID MRC IAA 2023-005 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 01/2024 
End 12/2024
 
Title Rapid screening of antiviral compounds 
Description In the generation of novel analogues of thapsigargin for antiviral activities, we need to establish a robust and rapid antiviral screening method to identify candidate antivirals for detailed downstream analysis. 
Type Of Material Technology assay or reagent 
Year Produced 2022 
Provided To Others? No  
Impact Using the antiviral screening protocol, we have identified about half a dozen of highly promising broad-spectrum novel antivirals. 
 
Title Airborne transmission of human-isolated avian H3N8 influenza virus between ferrets 
Description Genetic variation data derived from ferret transmission experiments of avian H3N8 influenza viruses. Supplementary Dataset 1. Genetic variation data derived from ferret transmission experiment of HN/4-10 virus. Supplementary Dataset 2. Genetic variation data derived from ferret transmission experiment of CS/1000 virus. Supplementary Dataset 3. Genetic variation data derived from ferret transmission experiment of CK/FE12 virus. Supplementary Dataset 4. Genetic variation data derived from ferret transmission experiment of CK/F0316 virus. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact This papers identified a new zoonotic threat of avian H3N8 virus to humans. 
URL https://zenodo.org/record/8191338
 
Title Emergent SARS-CoV-2 variants: comparative replication dynamics and high sensitivity to thapsigargin 
Description The struggle to control the COVID-19 pandemic is made challenging by the emergence of virulent SARS-CoV-2 variants. To gain insight into their replication dynamics, emergent Alpha (A), Beta (B) and Delta (D) SARS-CoV-2 variants were assessed for their infection performance in single variant- and co-infections. The effectiveness of thapsigargin (TG), a recently discovered broad-spectrum antiviral, against these variants was also examined. Of the 3 viruses, the D variant exhibited the highest replication rate and was most able to spread to in-contact cells; its replication rate at 24 h post-infection (hpi) based on progeny viral RNA production was over 4 times that of variant A and 9 times more than the B variant. In co-infections, the D variant boosted the replication of its co-infected partners at the expense of its own initial performance. Furthermore, co-infection with AD or AB combination conferred replication synergy where total progeny (RNA) output was greater than the sum of corresponding single-variant infections. All variants were highly sensitive to TG inhibition. A single pre-infection priming dose of TG effectively blocked all single-variant infections and every combination (AB, AD, BD variants) of co-infection at greater than 95% (relative to controls) at 72 hpi. Likewise, TG was effective in inhibiting each variant in active preexisting infection. In conclusion, against the current backdrop of the dominant D variant that could be further complicated by co-infection synergy with new variants, the growing list of viruses susceptible to TG, a promising host-centric antiviral, now includes a spectrum of contemporary SARS-CoV-2 viruses. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL https://tandf.figshare.com/articles/dataset/Emergent_SARS-CoV-2_variants_comparative_replication_dyn...
 
Title Emergent SARS-CoV-2 variants: comparative replication dynamics and high sensitivity to thapsigargin 
Description The struggle to control the COVID-19 pandemic is made challenging by the emergence of virulent SARS-CoV-2 variants. To gain insight into their replication dynamics, emergent Alpha (A), Beta (B) and Delta (D) SARS-CoV-2 variants were assessed for their infection performance in single variant- and co-infections. The effectiveness of thapsigargin (TG), a recently discovered broad-spectrum antiviral, against these variants was also examined. Of the 3 viruses, the D variant exhibited the highest replication rate and was most able to spread to in-contact cells; its replication rate at 24 h post-infection (hpi) based on progeny viral RNA production was over 4 times that of variant A and 9 times more than the B variant. In co-infections, the D variant boosted the replication of its co-infected partners at the expense of its own initial performance. Furthermore, co-infection with AD or AB combination conferred replication synergy where total progeny (RNA) output was greater than the sum of corresponding single-variant infections. All variants were highly sensitive to TG inhibition. A single pre-infection priming dose of TG effectively blocked all single-variant infections and every combination (AB, AD, BD variants) of co-infection at greater than 95% (relative to controls) at 72 hpi. Likewise, TG was effective in inhibiting each variant in active preexisting infection. In conclusion, against the current backdrop of the dominant D variant that could be further complicated by co-infection synergy with new variants, the growing list of viruses susceptible to TG, a promising host-centric antiviral, now includes a spectrum of contemporary SARS-CoV-2 viruses. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Demonstrates that TG is a potent antiviral against SARS-CoV-2. 
URL https://tandf.figshare.com/articles/dataset/Emergent_SARS-CoV-2_variants_comparative_replication_dyn...
 
Title SRSF5-mediated alternative splicing of M gene is essential for influenza A virus replication: a host-directed target against influenza virus. 
Description Peer reviewed paper. https://doi.org/10.1002/advs.202203088 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact The paper describes a novel host factor SRSF5 that facilitates influenza virus replication. 
URL https://onlinelibrary.wiley.com/doi/10.1002/advs.202203088
 
Description Industrial engagement 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact We are engaging medical and veterinary pharmaceutical companies with our antiviral discoveries and are refining our research focus in response to constructive advice received.
Year(s) Of Engagement Activity 2023