Ovine Respiratory Disease: A Pathway to Prevention
Lead Research Organisation:
MOREDUN RESEARCH INSTITUTE
Department Name: Vaccines and Diagnostics
Abstract
Lung infections are one of the main causes of death and illness in sheep and lambs despite there being a vaccine available against the bacteria believed to be the main causes of the disease. This disease impacts on the health and welfare of sheep but it also reduces productivity and potentially adds to the environmental impact of sheep farming through slowed growth, increased time to slaughter, and premature death.
This project aims to support farmers and vets to reduce lung disease in the sheep they care for. We will increase knowledge and understanding of the disease, allowing those working with sheep to make evidence-based decisions to reduce the number of cases. This will help improve animal welfare, farm profitability and efficiency and will reduce antimicrobial usage. In this 1-year project we will update the basic information needed to develop better solutions.
Sheep farmers will be involved in this project throughout via established farmer groups (grazing groups) and will work in partnership with researchers to assess the scientific findings and place them into context on their farms. In addition to information from farmers about their flocks and their vaccine usage, we will also collect lung samples from any sheep that die on the farms of the participating farmers. We will also collect samples from sheep submitted to the UK veterinary surveillance network of laboratories. The use of archived sheep lung samples from research studies which have been completed recently by the Moredun Research will allow the laboratory studies to begin right from the start of the project.
These sheep samples will be used to find out which organisms are currently the most important in causing lung disease in sheep. These organisms may directly cause the damage to the lung or may predispose the animal to disease by decreasing the effectiveness of their immune response. Increased understanding of the important organisms will show whether the current vaccines sold for sheep pneumonia target the correct pathogens.
Working together, the researchers and farmers will develop their understanding of respiratory disease in sheep. This partnership will allow co-development of practical, user-friendly interventions, leading to potentially rapid improvement for the health of sheep and lambs. This information will be shared with the wider sheep farming and veterinary community.
We envisage this 1-year study as the first step, answering the important questions necessary for immediate improvements and also to enable us to forge ahead with developing more ambitious and innovative approaches for control of lung disease in sheep in the future.
This project aims to support farmers and vets to reduce lung disease in the sheep they care for. We will increase knowledge and understanding of the disease, allowing those working with sheep to make evidence-based decisions to reduce the number of cases. This will help improve animal welfare, farm profitability and efficiency and will reduce antimicrobial usage. In this 1-year project we will update the basic information needed to develop better solutions.
Sheep farmers will be involved in this project throughout via established farmer groups (grazing groups) and will work in partnership with researchers to assess the scientific findings and place them into context on their farms. In addition to information from farmers about their flocks and their vaccine usage, we will also collect lung samples from any sheep that die on the farms of the participating farmers. We will also collect samples from sheep submitted to the UK veterinary surveillance network of laboratories. The use of archived sheep lung samples from research studies which have been completed recently by the Moredun Research will allow the laboratory studies to begin right from the start of the project.
These sheep samples will be used to find out which organisms are currently the most important in causing lung disease in sheep. These organisms may directly cause the damage to the lung or may predispose the animal to disease by decreasing the effectiveness of their immune response. Increased understanding of the important organisms will show whether the current vaccines sold for sheep pneumonia target the correct pathogens.
Working together, the researchers and farmers will develop their understanding of respiratory disease in sheep. This partnership will allow co-development of practical, user-friendly interventions, leading to potentially rapid improvement for the health of sheep and lambs. This information will be shared with the wider sheep farming and veterinary community.
We envisage this 1-year study as the first step, answering the important questions necessary for immediate improvements and also to enable us to forge ahead with developing more ambitious and innovative approaches for control of lung disease in sheep in the future.
Technical Summary
Ovine respiratory disease (ORD) is one of the chief causes of morbidity and mortality in sheep and lambs. It is multifactorial with both environmental stressors and co-infections predisposing the sheep to long-term chronic or acute inflammatory bacterial lung infections. The vaccines introduced over 35 years ago reduced the incidence and severity, but unacceptably high levels of ORD remain. To address ORD with modern, innovative solutions we first need to establish the basics. We will determine the microbiota of diseased compared to healthy lungs using 16S rRNA gene amplicon nanopore sequencing (MinION). Analysis pipelines are already in place to transform the data into information on the bacterial species/genus present and estimate the relative abundance. PCR and sequencing will further define species, strains, and serotypes. The presence of co-infections will be assessed through PCR and serology.
This work will show whether the current vaccines used for sheep pneumonia target the correct pathogens. The use of well-suited lung samples stored in a biobank from previous projects will allow work to begin immediately, whilst prospective collection of samples and associated metadata will increase the range of clinical presentations to be assessed. This will allow interrogation of any difference, for example, by signalment, pathological presentation, or management systems.
Sheep farmers will work in partnership with researchers throughout the project to place the scientific findings into context on their farms. Facilitated qualitative interviews will allow description of current practice and barriers to action. This partnership will allow co-development of practical interventions which will be disseminated to the wider farming and veterinary community.
This study will build contextualised understanding of the disease to underpin and define the next steps towards improved ORD control, thus reducing the losses experienced within the UK sheep industry.
This work will show whether the current vaccines used for sheep pneumonia target the correct pathogens. The use of well-suited lung samples stored in a biobank from previous projects will allow work to begin immediately, whilst prospective collection of samples and associated metadata will increase the range of clinical presentations to be assessed. This will allow interrogation of any difference, for example, by signalment, pathological presentation, or management systems.
Sheep farmers will work in partnership with researchers throughout the project to place the scientific findings into context on their farms. Facilitated qualitative interviews will allow description of current practice and barriers to action. This partnership will allow co-development of practical interventions which will be disseminated to the wider farming and veterinary community.
This study will build contextualised understanding of the disease to underpin and define the next steps towards improved ORD control, thus reducing the losses experienced within the UK sheep industry.
Organisations
Description | We assessed the types of bacteria present in the lungs of sheep with healthy lungs compared to sheep with lung disease. We showed that Proteobacteria and Firmicutes were the most highly abundant phyla for all samples but were more abundant in diseased than healthy ovine lung. The data suggested that there was a greater diversity of bacterial phyla in lesion tissue compared to healthy tissue although the difference was not statistically significant. Lungs from sheep which had pneumonia were associated with higher amounts of Clostridium genera compared to sheep which presented with other types of lung disease. |
Exploitation Route | Our findings provide valuable insights into the microbial composition of the sheep lung and identify potential bacterial taxa associated with ORD, paving the way for further research into the pathogenesis and management of this disease. Of particular interest, Clostridium genera were shown to be associated with pneumonia. This warrants further investigation as to how clostridial vaccines might impact respiratory disease in sheep. |
Sectors | Agriculture Food and Drink |
Title | Prospective collection of samples from ovine lung |
Description | Frozen and fixed lung tissue samples were collected from sheep at post mortem examination (fallen stock) alongside data about the age, farming system, geographical location etc of the sheep. To date 125 samples have been collected. |
Type Of Material | Biological samples |
Year Produced | 2022 |
Provided To Others? | No |
Impact | This provides an archive of tissue to be used by the current project and potentially future projects to investigate sheep lung disease. |
Title | Pipeline for analysis of 16S NGS data |
Description | The entire analysis pipeline is based in R and uses DADA2 package for estimating Amplicon sequence variants and their annotation. Briefly, the sequences are trimmed to remove primers and sequencing linkers and then filtered to remove poor quality sequences. Subset of good sequences are then used to model the error profile which is in turn used to denoise entire data. The pairs of sequences are merged and chimeric/bimeric sequences are removed. Genome Taxonomy Database (GTDB) was used to annotate all the predicted variants. The downstream analysis is performed using Phyloseq package with additional functions from other packages and plotting with ggplot2 package. Phyloseq package allows creating a phyloseq object which stores multi-layered data for same samples including sequence variants and their abundances per sample, taxonomic annotation of each sequence variant, and other metadata information associated with each sample. This object is then used throughout for generating alpha diversity, beta diversity, taxonomic-level based profiles and comparisons using functions within the package. |
Type Of Material | Data analysis technique |
Year Produced | 2023 |
Provided To Others? | No |
Impact | The analysis pipeline will enable more rapid analysis of the data that will be generated from the sequencing component of this project. |
Description | Contributed to a press article in Scottish Farmer 23/11/23 |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | I responded to an request to fact check and edit an article for the farming press - The Scottish Farmer. This led on the announcement of a new project funded by Scottish Government but also provided background information about OPA disease, diagnosis and control options. |
Year(s) Of Engagement Activity | 2023 |
Description | Iceberg Diseases talk for National Sheep Association Eastern Region Next Generation Day |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Industry/Business |
Results and Impact | I was invited by NSA to give a talk at the Eastern Region Next Generation Day, Newmarket, 12/08/23. As part of their sheep management seminar I gave a talk on the Iceberg Diseases aimed at encouraging farmers to be aware of these diseases and to work with their vets to employ appropriate control measures and biosecurity. Several hundred people attended the day of which almost 50 came to listen to the Seminar. There were a good number of questions straight after the talk and during the rest of the day, and several comments that people had learned something new to think about in relation to flock health. |
Year(s) Of Engagement Activity | 2023 |
Description | Interaction with stakeholders and endusers at NSA Northsheep June 2023 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Professional Practitioners |
Results and Impact | The visitors to the Moredun at Northsheep were very keen to talk and learn more about the health of their flocks. We had great 2-way discussions with a good number of shepherds and small holders regarding sheep health especially respiratory disease and anthelmintic resistance. For questions that were outside my area of expertise I was able to direct the visitors to other members of staff and/or to give them leaflets or further contacts they could ask. |
Year(s) Of Engagement Activity | 2023 |
Description | Interaction with stakeholders and endusers at the Royal Highland Show June 2023 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | People visited the Moredun stand to ask for advice on the disease problems in their own flocks or to educate themselves about aspects of farm animal health such as Biosecurity. I spoke to about 15 visitors to the stand on the day I was there and was able to answer their questions or to pass them on to a colleague with better knowledge of a particular area. Many visitors also collected leaflets for further reading on different areas of sheep or cattle health. |
Year(s) Of Engagement Activity | 2023 |
Description | Meeting with farmers group |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Farmers attending a "Grazing group" meeting discussed respiratory diseases in sheep, led by a sheep health specialist. They were also asked for their feedback on their own beliefs and practices around sheep respiratory disease. |
Year(s) Of Engagement Activity | 2023 |