NextGen Structural Biology under Electrochemical Control: Filling in Missing Intermediates in Metalloenzyme Catalytic Cycles
Lead Research Organisation:
University of Leicester
Department Name: Chemistry
Abstract
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Technical Summary
This project establishes new tools for mechanistic study of redox metalloproteins by combining advanced structural and spectroscopic methods with electrochemistry, building upon the team's world-leading expertise in electrochemical control over redox state within hydrogenase single crystals. Serial xfel and synchrotron crystallography offer the possibility of both damage-free structures and time-resolved data collection to reveal details of atomic motions during metalloprotein reactivity. In order to build up 'molecular movies', methods for synchronously initiating chemistry in the crystalline state are needed. A notable omission from the current structural biologists' toolkit are ways of initiating rapid redox chemistry in the crystalline state. Here we address this gap, using electrochemical control to produce a uniform 'resting' state within crystals of NiFe hydrogenase, and initiating redox reactivity using rapid light triggers and 'caged' electron sources soaked into microcrystal samples. We will leverage known light-sensitive steps during hydrogenase catalysis to study proton-coupled electron transfer, using neutron diffraction and time-resolved IR spectroscopy to reveal details of protonation sites during hydrogenase catalysis. In combination with pH/pD-dependent measurements, this will allow us to interrogate the choreography of H+ and electron transfer in unprecedented detail, from both structural and spectroscopic perspectives.
By extending our tools to the complex nitrogenase enzyme, linking for the first time key CO-bound structures to spectroscopic data and revealing the first isocyanide-bound nitrogenase structures, we demonstrate wider applicability to other metalloproteins. This step-change in control of protein crystals will bring the UK to the forefront of bioinorganic serial synchrotron and xfel efforts, and our methods will interest bioinorganic and biophysical chemists, structural biologists and the wider xfel/crystallography communities.
By extending our tools to the complex nitrogenase enzyme, linking for the first time key CO-bound structures to spectroscopic data and revealing the first isocyanide-bound nitrogenase structures, we demonstrate wider applicability to other metalloproteins. This step-change in control of protein crystals will bring the UK to the forefront of bioinorganic serial synchrotron and xfel efforts, and our methods will interest bioinorganic and biophysical chemists, structural biologists and the wider xfel/crystallography communities.
People |
ORCID iD |
| Philip Ash (Principal Investigator) |
| Description | STFC Life Sciences and Soft Materials Advisory Group |
| Geographic Reach | National |
| Policy Influence Type | Participation in a guidance/advisory committee |
| URL | https://www.ukri.org/who-we-are/stfc/how-we-are-governed/advisory-boards/life-sciences-and-soft-mate... |
| Title | Room temperature biological X-ray spectroscopy |
| Description | We have developed a small volume spectroscopic-electrochemical cell for use on synchrotron X-ray spectroscopy beamlines. This method enables precise control over oxidation state of metalloproteins, and offers protection against radiation damage. |
| Type Of Material | Improvements to research infrastructure |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | Preliminary collaborative experiments with Max-IV synchrotron using our electrochemical methods. |
| Description | Max-IV Sweden |
| Organisation | Max IV Laboratory |
| Country | Sweden |
| Sector | Academic/University |
| PI Contribution | Collaborative X-ray spectroscopy beamtime, where material and sample environments were prepared and provided by the Leicester research team. |
| Collaborator Contribution | Beamtime access to the Balder beamline at Max-IV synchrotron. |
| Impact | This is an interdisciplinary collaboration between beamline physicists and engineers at Max-IV, biochemists, molecular biologists, and chemists at the University of Leicester. Publications are in progress for open access publication, and preliminary findings have been reported at UK conferences. |
| Start Year | 2024 |
| Description | SpitFire Laser Loan |
| Organisation | Rutherford Appleton Laboratory |
| Department | Central Laser Facility |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Experimental design expertise, with collaboration formed during during competitively-awarded experimental time at the ULTRA facility (several publications in progress). |
| Collaborator Contribution | Long-term loan of an ultrafast laser system and optical tables in order to set up a complementary research facility at the University of Leicester. |
| Impact | A total of six weeks of collaborative experimental time have been awarded as a result of this collaboration. Multidisciplinary research spanning EPSRC, STFC, and BBSRC. |
| Start Year | 2023 |
| Description | Diamond Light Source PEER Review Panel |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Joined Peer Review Panel 5 (from March 2024), assessing user applications to Diamond Light Source and taking part in allocation of beamtime. |
| Year(s) Of Engagement Activity | 2024 |
| URL | https://www.diamond.ac.uk/Users/Apply-for-Beamtime/Peer-Review.html |
| Description | School visits (Leicestershire) |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Schools |
| Results and Impact | Online and in-person delivery of research-themed talks to local schools, 6 talks to approx. 30 students each, lead to a discussion about my career in science and spectroscopy-themed activity. |
| Year(s) Of Engagement Activity | 2021,2022,2023,2024,2025 |
| Description | User Working Group |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Formal membership of a User Working Group (BERRIES) within the spectroscopy village at Diamond Light Source UK, promoting proposed new beamline. Ongoing involvement in this working group (2023 onwards) as a result of further research income and involvement. |
| Year(s) Of Engagement Activity | 2020,2021,2022,2023,2024 |