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Development of a mucosally-delivered and active salmon louse vaccine for Atlantic salmon aquaculture

Lead Research Organisation: MOREDUN RESEARCH INSTITUTE
Department Name: Vaccines and Diagnostics

Abstract

The salmon louse, Lepeophtheirus salmonis, is an ectoparasite that feeds on the mucus, skin, underlying tissues, and blood of salmonid fish and is a particular issue for farmed Atlantic salmon. The economic impact of salmon lice on the global Atlantic salmon industry is estimated to be $1 US billion annually. The Atlantic salmon aquaculture industry is a key contributor to the UK economy, worth over £1 billion annually. The Scottish Government intends to double the value of Atlantic salmon production between 2016 and 2030. However, salmon lice are the biggest constraint to the expansion of the industry. The industry uses various methods to control salmon lice infestations, including chemotherapeutants, thermo or hydro-licers, snorkel cages and cleaner fish. However, there are major challenges with the application and efficacy of these approaches, and the salmon farming industry continues to look for new environmentally friendly solutions to control salmon lice infections, which offer better fish welfare, less handling, less stress, and less physical trauma than the methods currently employed. A commercial salmon louse vaccine would provide a practical, safe, and eco-friendly approach to managing salmon lice and enhance the current strategies used to control salmon lice. No commercial vaccines are available for L. salmonis; developing an efficacious vaccine against this parasite has been challenging. Traditional methods for administering salmon lice vaccines by intraperitoneal injection have shown limited success, primarily due to their inability to elicit a suitable immune response at the site where the lice feed - i.e., the mucosal surface of the skin. This project focuses on developing an effective prototype vaccine to protect Atlantic salmon from salmon lice by stimulating a protective mucosal immune response within their skin. We aim to create a vaccine that can be orally administered to fish to enhance both systemic and mucosal immune responses, thus increasing the chances of generating effective mucosal immune protection against sea lice. Appropriate vaccine targets are those that affect parasite biology, such as attachment, development and/or maturation and which are present during parasitic stages of the louse's life cycle. Our innovative approach will use reverse vaccinology (RV) to quickly identify key biological targets within the salmon louse for novel vaccine development. This involves identifying antigens in silico from the genome of the salmon louse using bioinformatic tools. We will integrate this with an artificial intelligence (AI) antigen prediction platform (EpitopePredikt) to assist in antigen discovery and docking potential, pinpointing immunogenic epitopes that can be recognised by fish immunoglobulins (IgM and IgT antibodies). This will allow a targeted selection of vaccine candidates for assessment in vivo. These will be integrated into a unique mucosal antigen-presenting scaffold for oral delivery. Multiple antigens will be expressed on a single scaffold using an epitope/peptide expression platform (EpitoGen), so fewer fish are needed for antigen assessment in immunisation/infection trials, and the immune response of fish is exposed to several recombinant epitopes on the scaffold to produce a more robust immune response. The efficacy of our vaccine will be measured by its ability to reduce the number of lice (and/or the fecundity of female salmon lice) on vaccinated fish that have been experimentally infected with salmon lice. This project is an interdisciplinary collaboration between the Moredun Research Institute (MRI), the University of Stirling's Institute of Aquaculture (IoA), Bimeda Animal Health (BAH), and Vertebrate Antibodies Ltd (VAL) with an Industrial Award Partnership contribution from BAH.

Technical Summary

Traditional methods for administering salmon lice vaccines by intraperitoneal injection have shown limited success, primarily due to their inability to elicit a suitable immune response at the site where the lice feed - i.e., the mucosal surface of the skin. We aim to create a vaccine that can be orally administered to fish to enhance both systemic and mucosal immune responses, thus increasing the chances of generating effective mucosal immune protection against sea lice. Appropriate vaccine targets are those that affect parasite biology, such as attachment, development and/or maturation and which are present during parasitic stages of the louse's life cycle. Our innovative approach will use reverse vaccinology (RV) to quickly identify key biological targets within the salmon louse for novel vaccine development. This involves identifying antigens in silico from the genome of the salmon louse using bioinformatic tools. We will integrate this with an artificial intelligence (AI) antigen prediction platform (EpitopePredikt) to assist in antigen discovery and docking potential, pinpointing immunogenic epitopes that can be recognised by fish immunoglobulins (IgM and IgT antibodies). This will allow a targeted selection of vaccine candidates for assessment in vivo. These will be integrated into a unique mucosal antigen-presenting scaffold for oral delivery. Multiple antigens will be expressed on a single scaffold using an epitope/peptide expression platform (EpitoGen), so fewer fish are needed for antigen assessment in immunisation/infection trials, and the immune response of fish is exposed to several recombinant epitopes on the scaffold to produce a more robust immune response. The efficacy of our vaccine will be measured by its ability to reduce the number of lice (and/or the fecundity of female salmon lice) on vaccinated fish that have been experimentally infected with salmon lice.

Publications

10 25 50
 
Description Collaboration between Moredun Research Institute, Institute of Aquaculture, University of Stirling and EpitoGenX Ltd 
Organisation University of Stirling
Department Institute of Aquaculture
Country United Kingdom 
Sector Academic/University 
PI Contribution At Moredun Research Institute (MRI), we are applying a reverse vaccinology approach enhanced with AI to identify antigens for a mucosal vaccine against the Salmon louse (Lepeophtheirus salmonis). This strategy focuses on antigens from various parasitic life stages of the sea louse that are crucial for its feeding, development, reproduction, and interactions with the salmon host. Our collaborators include the University of Stirling (UoS), helping to identify biologically relevant sea louse proteins, and EpitoGenX Ltd, conducting the AI analysis to predict immunodominant epitopes on these proteins and producing the vaccine scaffolds. Dr. Xuhang Wu (postdoctoral scientist) and Dr. Marc Faber (named scientist) have identified 2,908 potential vaccine candidates from the L. salmonis genome, featuring signal peptides. This was accomplished using tools like SignalP 6.0 and DeepLoc 2.1 to predict protein localization and DeepTMHMM 1.0 for potential transmembrane proteins. A new L. salmonis genome assembly was also generated. We are also revisiting archived proteomic datasets at MRI to explore extracts and secretomes of sea lice using this refined list of proteins. Currently, we are evaluating the ability of these scaffolds to induce a mucosal immune response through oral administration. We are using a model sea louse antigen, a trypsin, for the immunisation study to be performed in Atlantic salmon. This trial involves evaluating the immune response to this antigen (as a full-length protein expressed within the scaffold) delivered orally to fish in their feed, with and without an oral adjuvant (Seppic), and comparing these responses (antibody and immune gene expression) obtained to those of an empty scaffold. Additionally, another group will receive the scaffold with the model antigen, combined with an adjuvant (Montanideā„¢ ISA 763B VG), delivered by intraperitoneal injection (used as a positive control). Another group will be vaccinated IP with the scaffold containing two immunodominant epitopes from the trypsin molecule identified through EpitoGenX's AI platform. These vaccine targets are currently being produced by EpitoGenX Ltd.
Collaborator Contribution University of Stirling (UoS) The UoS team is also identifying biologically significant proteins using data from other ongoing sea lice research. This effort includes Dr Mike McGowan, a postdoctoral scientist, analyzing transcriptomic data from free-swimming copepodid salmon lice in salmon-conditioned water, and Alex Dindial, a PhD student, working with proteomic data from copepodid salmon lice exposed to semiochemical attractants. Carol McNair, the postdoctoral scientist on this project, has used archived sea lice data to pinpoint several trypsin molecules as potential model antigens for evaluating the mucosal immune response to the vaccine scaffolds. In collaboration with the MRI, the UoS team has finalized an experimental design for the mucosal trial. Dr. Sean Monaghan, the principal investigator at UoS, has submitted the necessary application to UoS's Animal Welfare and Ethical Review Body and is currently awaiting approval for this. The trial is set to commence in April 2025, together with another trial aimed at investigating gene expression across different life stages of the salmon louse as a source of potential vaccine candidates. EpitoGenX has performed epitope mapping across the different trypsin molecules identified by UoS and MRI. Two immunodominant epitopes were identified on the trypsin molecule chosen for the mucosal immunity studies, using their AI platform. Marc Faber (MRI) modelled predicted epitopes on predicted 3D protein structures to confirm epitope accessibility. These will be incorporated into the vaccine scaffold for one of the IP vaccination groups. EpitoGenX started the production of scaffolds, one containing the whole trypsin molecule and the other with the two identified epitopes for the mucosal immunity trial that will begin in April 2025.
Impact Analysis still ongoing
Start Year 2024
 
Description Collaboration with Kasetsart University, Bangkok, Thailand on parasite vaccines for fish 
Organisation Kasetsart University
Country Thailand 
Sector Academic/University 
PI Contribution University of Stirling hosting PhD student from Kasetsart University between March 31 - June 30, 2025. PhD student will be trained in molecular methods and may contribute to sampling and gene analysis on the project.
Collaborator Contribution Possible training
Impact Skills and Knowledge transfer hoped to develop collaboration on parasite vaccines for Asian aquaculture.
Start Year 2024
 
Description Interview for the Economist magazine and inclusion in follow-up online article 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Invited to interview for the Economist magazine regarding the potential of vaccination to prevent or control sea lice infections within the context of mitigating economical challenges to the Atlantic salmon industry. The project approach was included in the Economist 'Science and Technology' section in an article published 10th July 2024, "Vaccines could keep salmon safe from sea lice". The viewership for the online Economist is estimated to reach >10.5 million unique viewers every month.
Year(s) Of Engagement Activity 2024
URL https://www.economist.com/science-and-technology/2024/07/10/vaccines-could-keep-salmon-safe-from-sea...
 
Description Kim Thompson invited to Workshop on Identifying Priority Research Areas for Finfish Health, held at the WOAH Headquarters in Paris from 20-21 February 2025 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Third sector organisations
Results and Impact The workshop was hosted by WOAH Headquarters in partnership with the STAR-IDAZ International Research Consortium on Animal Health and the WOAH Aquatic Animal Health Standard Commission. It aimed to harness global expertise and scientific excellence by convening a panel of international fish health experts. The purpose was to identify the most critical research priorities in the field of aquatic animal diseases.

Expected outcomes
? Strengthen international coordination and collaboration on aquatic animal disease research by improving trust among aquaculture scientific networks;
? Identification of the highest-priority research areas for aquatic animal diseases, in particular those that will have a direct impact on international standards;
? Shared understanding on identified research needs, increasing ownership of workshop results among key stakeholders;
? Research funders & industries representatives (STAR-IDAZ IRC Executive Committee Members) informed on research needs identified
? Enhance WOAH leadership role in bringing together relevant aquatic animal health stakeholders and STAR-IDAZ role as global animal health research network;
? Strengthen, support and more fully utilise WOAH scientific networks
? Facilitate networking and engagement of WOAH Reference centres
? Encourage and support Reference centres in addressing research gaps, specifically those to improve the international standards

Output
? High level document on identified major research needs for aquatic animal diseases
Year(s) Of Engagement Activity 2025
URL https://www.woah.org/en/event/advancing-aquaculture-health-research-a-collaborative-workshop/
 
Description Marc Faber presented the project to MRI's patron HRH Princess Anne at "The role of livestock in future food security "event on Friday 29th November 2024 at Moredun 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Supporters
Results and Impact Moredun is committed to promoting livestock health and welfare through research and education and is recognised worldwide for its contribution to research into infectious diseases of farmed livestock. HRH Princess Anne is the patron of Moredun and promotes our research work, visiting annually to do so. The audience included Moredun Foundation Members, Media, Vets, Academia and the Scottish Government.
Year(s) Of Engagement Activity 2024