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Mapping the human hypothalamic functional architecture underlying food intake control

Lead Research Organisation: University of Cambridge
Department Name: Institute of Metabolic Science

Abstract

Obesity is a growing public health problem. While our changing lifestyle and environment have undoubtedly driven this increase, there is a powerful genetic component that underlies the large variation in human body shape and size in this modern environment. Understanding the mechanisms controlling feeding behaviour that lead to this variability in body-weight will be important in informing any strategy to improve our health in this current food environment. While the preferred model in which to study food intake is clearly in humans, the fact that genetic studies point to a region in the brain called the hypothalamus as having a crucial role in modulating appetite has limited the mechanistic insights achievable through human research. The inaccessibility of the human hypothalamus has, to date, meant our understanding of brain circuits controlling food intake has emerged primarily from mouse studies. Now, an important collaboration with the Cambridge Brain Bank, is allowing us access to fresh human donor brain samples. This, coupled with recent developments in single-cell sequencing and in technologies allowing us to visualize single-molecules using fluorescence, provides us with a timely opportunity to map the functional architecture of the human hypothalamus, with a focus on appetitive behaviour. A functioning map requires two key elements; we first need to know the components of the map, and then we need to know where these components sit on the map, with respect to each other. Thus our two objectives are: A) using single-cell technologies, we will sequence 500,000 individual hypothalamic cells, in order to perform a molecular census of cell populations to identify components of the neuro-circuitry controlling food intake; B) using an approach called single-molecule fluorescent in-situ hybridization (smFISH), we will map the different components identified onto both mouse and human brains. We will examine the spatial expression of these genes in the human hypothalamus and compare this to the pattern seen in the mouse brain. Detailed mechanistic studies on the brain using modern genetic manipulation tools will, for obvious reasons, still require mouse models. Our rationale however, is that if a certain neuronal population is ONLY found in mice, then studying it makes little 'translatable' sense. It would be far better to focus finite resources on generating sophisticated mouse models once we can determine that a particular pathway or neuronal type actually exists in the human brain. Our goal of a comprehensive human hypothalamic atlas will be of utility to basic scientists and clinical researchers attempting to better understand the fundamental nature of energy balance regulation by the hypothalamus. This will hopefully allow us to manipulate these systems to improve the health of the population.

Technical Summary

Obesity is a growing public health problem, however genetic studies point to the brain, and in particular the hypothalamus, as having a crucial role in modulating appetitive behaviour, which has limited the mechanistic insights achievable from human research. The inaccessibility of the human hypothalamus has, to date, meant our understanding of circuitry controlling food intake has emerged primarily from murine studies. Now, a collaboration with the Cambridge Brain Bank allowing us access to fresh human donor brain samples, coupled with single-nucleus sequencing (NucSeq) technologies and single-molecule fluorescent in-situ hybridization (smFISH), provides us a timely opportunity to map the functional architecture of the human hypothalamus underlying appetitive behaviour. To achieve this, we have two objectives: A) Using NucSeq, we will sequence at least 500,000 individual hypothalamic cells to perform a molecular census of cell populations, and identify components of the neuro-circuitry controlling food intake in humans. B) The second is taking a targeted candidate approach to determine the spatial coordinates of different components. The pro-opiomelanocortin (POMC) and NPY neurons are key energy sensors within the arcuate nucleus of the hypothalamus. We have identified murine POMC and NYP populations expressing distinct pattern of genes involved in the regulation of food intake. We will examine the spatial expression of these genes in the human hypothalamus and compare this to the pattern seen in the murine brain. smFISH allows us to not only to detect low-expression transcripts, but with the capability to image from four different fluorescent channels, will enable us to visualize up to four different transcripts at once. A comprehensive human hypothalamic atlas will be of utility to better understand the fundamental nature of energy balance regulation by the hypothalamus and allow us manipulate these systems to improve the health of the population.

Planned Impact

This study integrates two fundamental biomedical topics - neuroscience and metabolism - that will initially impact academic and commercial research communities including post- and under-graduate students working on obesity, neuroanatomy, physiology and gene expression. In the near term, the project will directly impact those focussing on the hypothalamic control energy balance, but as it develops, it will bring an awareness about the importance of neuroscience to the obesity epidemic to an increasingly broad audience locally, nationally and internationally. Between them, Dr Yeo and Prof Rowitch have over four decades of experience working in the US and UK, presenting an ongoing opportunity for knowledge transfer from many centres of excellence. They will seek to publish our findings in high-profile, broadly-read, peer-reviewed international journals such as NPG, Cell Press or AAAS titles; Dr Yeo and Prof Rowitch publish in all three. Work on hypothalamic neuroscience will be communicated to academic audiences nationally at meetings but more often in one-off presentations at UK universities and research institutes. Communication internationally will be at scientific meetings that include Keystone Symposia or Gordon Conferences, whose academic participants often include policy makers; Drs Perry and Yeo have recently presented their work at both. Outreach to potential stake-holders including academics, policy-makers and the commercial sector will be maximised.

The work proposed here is, by its very nature, fundamental. It will have direct efforts on the 3 'Rs', by allowing the field to refine the types of mouse models used, and ultimately reducing the numbers of animals required. Knowledge generated here will eventually inform new health care messages, interventions and treatment regimes, with beneficiaries that include health care professionals, private and public health institutions (NHS, social services), policy makers (Department of Health, Health Authorities), charities (eg WHO, Diabetes UK, British Heart Foundation), pharmaceutical and biotechnology companies and those at risk of developing diet-related illnesses disease. We expect the work to identify novel therapeutic targets of human relevance that directly inform clinical studies, benefiting healthcare workers and some of the 74% of adults in the UK are predicted to be over-weight by 2030. Given that the NHS in England spent ~£5.1 billion on obesity-related ill-health in 2014-15, reducing incidence of this condition will have a major economic impact. The work will benefit the commercial private sector because it will lead to new information on human relevant markers that influence metabolic disease, allowing us to improve the health of the population.

Publications

10 25 50
 
Description The hypothalamus is a brain region that plays a key role in coordinating fundamental biological functions. However, our understanding of the underlying cellular components and neurocircuitry have, until recently, emerged primarily from rodent studies. Here, we combine a single-nucleus sequencing database of 433,369 human hypothalamic cells, with spatial transcriptomics, to present a comprehensive spatio-cellular transcriptional map of the human hypothalamus, the 'HYPOMAP'. Whilst conservation of neuronal cell types between humans and mice, based on transcriptomic identity, is generally high, there are notable exceptions. Specifically, there are significant disparities in the identity of POMC neurons and in the expression levels of GPCRs between the two species that carry direct implications for currently approved obesity treatments. Out of the 458 hypothalamic cell types in HYPOMAP, we find 182 neuronal clusters that are significantly enriched in expression of BMI GWAS genes. This enrichment is driven by 375 'effector' genes, with rare deleterious variants in 6 of these; MC4R, PCSK1, POMC, CALCR, BSN and CORO1A, the latter has previously not been linked to obesity; being significantly associated with changes in BMI at the population level. Thus, HYPOMAP provides a detailed atlas of the human hypothalamus in a spatial context, and serves as an important resource to identify novel druggable targets for treating a wide range of conditions, including reproductive, circadian, and metabolic disorders.
Exploitation Route Once published this resource will be made open access. It will be of interest to anybody interested in the hypothalamus. In addition to energy homeostasis (which is my field of interest), the hypothalamus plays a role in multiple other physiological systems including reproduction, stress and circadian rhythms.
Sectors Agriculture

Food and Drink

Healthcare

Pharmaceuticals and Medical Biotechnology

URL https://www.biorxiv.org/content/10.1101/2023.09.15.557967v1
 
Description Determining the mechanisms of action of AMG133 in the treatment of obesity
Amount £1,150,531 (GBP)
Organisation Amgen Inc 
Sector Private
Country United States
Start 03/2025 
End 03/2028
 
Description Mapping the human hindbrain using single-nucleus RNA sequencing and single-molecule fluorescent in-situ hybridization
Amount £418,268 (GBP)
Organisation Novo Nordisk 
Sector Private
Country Denmark
Start 11/2021 
End 10/2023
 
Description Mapping the hypothalamic architecture underlying appetite control in the Prader Willi brain
Amount $162,000 (USD)
Organisation Foundation for Prader-Willi Research (FPWR) 
Sector Charity/Non Profit
Country United Kingdom
Start 05/2023 
End 11/2024
 
Title Human embryonic genome activation initiates at the one-cell stage (Supplementary Tables) 
Description Tables showing differentially expressed genes in Human 2PN embryos vs MII Oocytes 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/331269
 
Title Research data supporting "A survey of the mouse hindbrain in the fed and fasted states using single-nucleus RNA sequencing" 
Description The area postrema (AP) and nucleus tractus solitarius (NTS) located in the hindbrain are key nuclei that sense and integrate peripheral nutritional signals and consequently regulate feeding behaviour. While single-cell transcriptomics have been used in mice to reveal the gene expression profile and heterogeneity of key hypothalamic populations, similar in-depth studies have not yet been performed in the hindbrain. Using single-nucleus RNA sequencing, we provide a detailed survey of 16,034 cells within the AP and NTS of mice in the fed and fasted states. We provide a detailed single-cell level characterisation of AP and NTS cells expressing receptors for key anti-obesity drugs that are either already approved for human use or in clinical trials. This resource will help delineate the mechanisms underlying the effectiveness of these compounds and also prove useful in the continued search for other novel therapeutic targets. 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/364550
 
Title Research data supporting "HypoMap - a unified single cell gene expression atlas of the murine hypothalamus" 
Description The hypothalamus plays a key role in coordinating fundamental body functions. Despite recent progress in single-cell technologies, a unified catalogue and molecular characterization of the heterogeneous cell types and, specifically, neuronal subtypes in this brain region are still lacking. Here we present an integrated reference atlas "HypoMap" of the murine hypothalamus consisting of 384,925 cells, with the ability to incorporate new additional experiments. We validate HypoMap by comparing data collected from SmartSeq2 and bulk RNA sequencing of selected neuronal cell types with different degrees of cellular heterogeneity. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/340518
 
Description BBC2 programme 'Who Are You Calling Fat?' - Expert 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact In a 'fly on the wall' primetime programme on BBC2, nine people who live with obesity, or who choose to call themselves fat, move in together to explore what it means to be larger bodied in Britain today. I appeared on the second episode to offer my expert opinion on the role of genetics on obesity. 3 million live viewers
Year(s) Of Engagement Activity 2019
URL https://www.bbc.co.uk/programmes/m0009tvl
 
Description Genetics Society 2019 JBS Haldane Award Lecture 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This lecture 'Is Obesity A Choice?' took place at the Royal Institution in London on November 1, 2019. There were 300 people in the audience. The lecture was recorded and uploaded onto the Royal Institution YouTube Channel, where it has (as of Feb 27, 2020) been viewed 26,088 times.
Year(s) Of Engagement Activity 2019
URL https://www.youtube.com/watch?v=88tWJ1p5d4o
 
Description Interview on BBC Radio 4's Life Scientific 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Interviewed by Jim Al-Khalili about the powerful influence our genes have on how we put on weight, and why many of us struggle to lose it. This sparked a big response, including being contacted by Cambridge MP and shadow food minister Daniel Zeichner.
Year(s) Of Engagement Activity 2021
URL https://www.bbc.co.uk/programmes/m000rmp5
 
Description Interview on Scandinavian Talk Show 'Skavlan' 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This was an interview on Scandinavia's largest talkshow 'Skavlan', which broadcasts to Sweden, Norway and Finland. Each episode has more than 2 million live viewers.
Year(s) Of Engagement Activity 2020
URL https://www.youtube.com/watch?v=tqXccq2jLkc
 
Description Invited Symposium Speaker, British Endocrine Society Annual Meeting, Edinburgh, Scotland November 8, 2021. Title 'Single-cell analysis and heterogeneity of hypothalamic neurons' 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited Symposium Speaker, British Endocrine Society Annual Meeting, Edinburgh, Scotland
November 8, 2021. Title 'Single-cell analysis and heterogeneity of hypothalamic neurons'
Year(s) Of Engagement Activity 2021
 
Description Invited Symposium Speaker, German Diabetes Association Annual Meeting May 14, 2021. Title 'Heterogeneity of hypothalamic POMC neurons' 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Invited Symposium Speaker, German Diabetes Association Annual Meeting
May 14, 2021. Title 'Heterogeneity of hypothalamic POMC neurons'
Year(s) Of Engagement Activity 2021
 
Description Podcast 'Dr Giles Yeo Chews The Fat' 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This was an 8 part podcast entitled 'Dr Giles Yeo Chews The Fat'. I dealt with multiple topics around obesity and other diet-related illnesses, by speaking with experts as well as some celebrities.
Year(s) Of Engagement Activity 2021
URL https://play.acast.com/s/dr-giles-yeo-chews-the-fat
 
Description University of Toronto, City-wide Grand Rounds April 23, 2021. Title 'The brain control of food intake: Can an old dog teach us new tricks?' 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact University of Toronto, City-wide Grand Rounds
April 23, 2021. Title 'The brain control of food intake: Can an old dog teach us new tricks?'
Year(s) Of Engagement Activity 2021
 
Description Virtual Royal Institution Talk 'How we got the science of weight loss wrong' 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This was a virtual talk 'at' the Royal Institution, entitled 'How we got the science of weight loss wrong'. It was given live, but then also recorded and uploaded onto the Royal Institution YouTube channel. It has since accrued 750K views.
Year(s) Of Engagement Activity 2021
URL https://www.youtube.com/watch?v=GQJ0Z0DRumg