Visualisation Tools for Integrating Large Alternative Linnaean Taxonomies

Lead Research Organisation: Edinburgh Napier University
Department Name: Computing

Abstract

Biological taxonomy involves the classification and naming of plants, animals and all the other living organisms on earth, however taxonomists often disagree over how the organisms should be classified, so we end up with many different taxonomies. Generally, individual taxonomists can only manage to classify a small group of organisms, and so many taxonomists' work is joined together to form larger taxonomies. When we have many alternative taxonomies, combining them into one large hierarchy to picture the relationships between organisms is difficult and problems also arise when the taxonomies get too large to comprehend. To compound these problems, different classifications often result in different names for what some people may consider the same organism. This results in one name in one classification meaning something else in another classification, so taxonomists also have to handle and process this information if they are to understand the overall relationship between taxonomies.This project aims to help taxonomy users through 'Information Visualization', a technique which allows data to be displayed and manipulated graphically, rather than as pages of raw text. This approach is effective because people perceive information and relationships more easily when they are displayed diagrammatically, in terms of shapes, sizes, colours and positions. In this project we will create and develop techniques that graphically show taxonomic hierarchies and their associated relationships, to allow taxonomists to intuitively interact with and query the data.This should allow taxonomists to focus on the questions they need to ask of the data and the answers that are returned, rather than the process of how to ask the questions or how to cope with untangling the relationships of the information that they are faced with.Not only will the project result in effective tools for the taxonomists but we will advance data visualisation techniques applicable to any area where it is important to compare large alternative hierarchies of information.

Publications

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Graham M (2007) Visual exploration of alternative taxonomies through concepts in Ecological Informatics

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Graham M (2009) A Survey of Multiple Tree Visualisation in Information Visualization

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Graham M (2007) Exploring multiple trees through DAG representations. in IEEE transactions on visualization and computer graphics

 
Description Visual representation of multiple taxonomies aids taxonomists in finding differences / similarities between related taxonomic classifications.



Different representations have their own strengths/weaknesses. Small multiple representations show large numbers of differences in structure more clearly, whereas agglomerated representation show similarities and small amounts of change more easily.



Visualisation of concept related (not name-related) taxonomies is more difficult than showing simple name matching as these include one-to-many and many-to-one relationships.
Exploitation Route Potential use in corporate document classification matching, where different companies use different classifications for organising the same documents. Initial contact with a firm in the energy industry for correlating multiple document collections (see below)
Sectors Digital/Communication/Information Technologies (including Software),Environment,Other

URL http://www.iidi.napier.ac.uk/c/grants/grantid/9565528
 
Description The tools were made available to taxonomists for exploring their data.
First Year Of Impact 2008
Sector Environment
Impact Types Societal

 
Description Global Biodiversity Information Facility 
Organisation Global Biodiversity Information Facility (GBIF)
Country Global 
Sector Charity/Non Profit 
PI Contribution Development of tools to aid access and understanding of GBIF's datasets
Collaborator Contribution Supply of data and feedback to prototypes, hosting for developed tools on their website.
Impact Dissemination of VESPER website to larger community that congregate around GBIF publishing hub
Start Year 2006
 
Description University of Kansas 
Organisation University of Kansas
Country United States 
Sector Academic/University 
Start Year 2006
 
Description University of North Carolina Chapel Hill 
Organisation University of North Carolina at Chapel Hill
Country United States 
Sector Academic/University 
Start Year 2006
 
Title TaxVis Java Software 
Description Visualisation tool for comparing multiple taxonomies 
Type Of Technology Software 
Year Produced 2009 
Impact Used as example case for use of TDWG taxonomic data schema 
URL http://www.taxvis.org.uk/content/page/applications