Development of Organometallic Catalysts with a Knowledge-Based Computational Approach

Lead Research Organisation: University of Bristol
Department Name: Chemistry

Abstract

Catalysts are often the unsung heroes of synthetic chemistry. Whilst we all know that a catalyst can be used to speed up a reaction, it is often not appreciated that the choice of catalyst can also control the selectivity of the reaction, thereby influencing its products. The key to catalysis is control. Consider a chemical reaction / it has a range of input variables, both chemical (such as the metal and ligands used in an organometallic catalyst) and environmental (such as temperature and pressure). If a reaction can give two products, A and B, then the right catalyst can be used to control the reaction so that the desired levels of A and B are produced. This is particularly important if we are only interested in one of the products, for example B, because otherwise we might have to separate A from B and could end up having to throw away any amounts of A produced. Until now, chemists have usually identified suitable catalysts empirically / performing the same reaction many times, each time varying one of the inputs, until a satisfactory result is achieved. This process often has to be repeated for each new reaction, as the screening results may not be transferable. This is an inefficient and expensive process, which takes up significant time and resources with no guarantee that the result will indeed present the optimum solution.The development of increasingly powerful yet affordable computers has revolutionised the study of organometallic catalysis. As Wendy Cornell, a director in the molecular systems group at Merck puts it, we are able not only to do longer and bigger calculations, but we also have the opportunity to re-evaluate our basic approach to a scientific problem. (Quoted in Chemical and Engineering News, September 27th 2004, pp. 35-40.) This research project seizes this exciting opportunity by developing a faster, more accurate and more efficient computational approach to the study of organometallic catalysis. Firstly, a robust computational methodology for the study of catalytic cycles with real complexes will be developed. This is in contrast to most computational research currently undertaken, which relies on simplified, and therefore perhaps less accurate, models of the catalysts. Secondly, this methodology will be tested in the study of several important reactions, rhodium-catalysed hydroformylation and the family of palladium-catalysed cross-coupling reactions. By varying the ligands used in these reactions, the key steps of the catalytic cycles (i.e. where the modification of ligands has the greatest effect) will be identified. Thirdly, these key steps will be studied in greater detail, culminating in the construction of statistical models for predicting the outcome/selectivity of the reaction. Extension of the knowledge bases is straightforward, allowing both known and novel complexes to be considered computationally, even if they have not yet been synthesised.The development of this approach will profoundly change the study of organometallic catalysis. For the first time, researchers will be able to work backwards from a desired outcome to determine the best combination of inputs. Rather than settling for input variables that produce a result that is 'good enough', researchers will be able to identify the optimum combination of inputs to achieve the desired outcome. This is an advancement of organometallic chemistry that is as important as it is exciting. It will make the study of homogeneous catalysis more accurate, more efficient and less wasteful, focusing the attention of researchers on the best candidates and the final knowledge outcome. This will be of inestimable benefit to all areas of chemical research, offering greener routes to desirable chemicals important in drug design, polymers and plastics as well as agricultural fertilisers.

Publications

10 25 50

publication icon
Bedford RB (2011) Remarkably reactive dihydroindoloindoles via palladium-catalysed dearomatisation. in Chemical communications (Cambridge, England)

 
Description Without a suitable catalyst, many chemical reactions would not proceed, or require extreme reaction conditions to take place. Even where a chemical reaction can be made to happen, controlling the final product can be challenging, as many reaction pathways are potentially accessible and the observed catalytic cycles arise from a delicate balance of properties where small changes to the inputs can substantially alter the outcomes. However, while we are starting to make inroads with our conceptual understanding of catalysis, quantifying and predicting the effects of catalyst modifications remains challenging, often precluding a true design process for new catalysts.



In homogeneous organometallic catalysis, the site of catalysis is normally a transition metal centre, and once catalytic activity has been established, the "innocent" groups attached to this centre can be used to modify and fine-tune the catalyst's properties, such as its activity, stability and selectivity. While it might seem desirable to fully evaluate every possible combination of input variables computationally, present resources are simply insufficient to achieve this (researcher input is a key bottleneck in the exploration of intermediates and transition states) and the research undertaken as part of this Advanced Research Fellowship has sought to address this challenge by combining computational studies of the mechanism of catalysis with databases of calculated parameters capturing the structural and electronic effects of ligands, a key component of catalyst discovery and design.



This project had two main strands: the accurate computational mechanistic study of representative catalytic cycles (cross-coupling and hydroformylation) and the development of databases of calculated parameters (the term descriptors is used interchangeably here) capturing the structures and electronic properties of a broad range of ligands in different chemical environments. Using both classical and robust statistical approaches, regression models could then be derived for the interpretation and prediction of ligand effects (Dalton Trans., 2010, 39, 296-310), and both experimental results and calculated energy profiles have been used as training data. In addition, ligand descriptors were processed with Principal Component Analysis (PCA) to produce extensive "maps" of ligand space, useful for the design of experimental screening and the interpretation of experimental data (Organometallics, 2012, 31, 5302-5306, Organometallics, 2010, 29, 6245-6258; Dalton Trans., 2009, 8183-8196; Organometallics, 2008, 27, 1372-1383). These maps have also been used to provide a context for novel ligand designs and suggest, through proximity in ligand space, potential catalytic applications (Angew. Chem. Int. Ed. 2012, 51, 118-122).



Computational studies of catalytic cycles for large and flexible catalysts as used experimentally are very demanding, firstly of the computational approaches used, which need to capture dispersion, solvation and entropic contributions (Dalton. Trans. 2011, 40, 11184 - 11191, Dalton Trans., 2010, 39, 10833-10836) while allowing for the efficient consideration of multiple conformers and isomers (J. Mol. Cat. A, 2010, 324, 48-55, Angew. Chem. Int. Ed., 2009, 48, 6262-6265), but also of computational resources, as small changes to the catalyst can access different mechanistic pathways (Dalton Trans., 2010, 39, 10833-10836). In this project the careful selection of subsets of ligands from ligand maps has been key for achieving meaningful sampling of a broad range of ligand properties, thus allowing for predictions.



This project has demonstrated that the large-scale evaluation of ligand effects of synthetically relevant organometallic catalysts is both computationally feasible and can be applied to the interpretation and prediction of ligand effects on the mechanism and activity of catalysts. In addition, the project has illustrated that accurate calculations on complete catalytic cycles are both practicable and that such data can be used to train statistical models for the prediction of ligand effects. Experimental data of sufficient accuracy for the validation of computational studies can be difficult to find, and in the present project several collaborations with leading experimental groups (Pringle, Lloyd-Jones, Lynam/Slattery, Nichols/Bergman/Elman) have helped to supply such results and thus establish the usefulness of a synergic approach, combining experiment and computation to best effect. Strong links with academic and industrial researchers have been developed and the project results continue to generate interest with frequent requests for collaborations in both spheres.
Exploitation Route Maps of ligand space continue to attract industrial interest for the design and analysis of catalyst screening experiments, especially high-throughput screening. In addition, a new project with CatScI Ltd. has recently been funded, which will seek to adapt the protocols and concepts developed to implement virtual ligand screening and hence allow the design of novel ligands active in organometallic catalysis. This project sought to achieve a fundamental understanding of whether parameters describing the properties of ligands in a small set of representative coordination environments could be combined with detailed computational studies of the mechanism of catalysis to achieve quantitative prediction of ligand effects.



The resulting "maps" of ligand space continue to be used by collaborators in both academia and industry to contextualise novel ligand designs (Pringle, Lynam/Slattery), design ligand test sets for screening and reaction optimisation (Nichols/Bergman/Elman, AstraZeneca, CatScI, Lloyd-Jones), develop virtual ligand screening (CatScI) and for the interpretation and prediction of ligand effects on catalysis (Lloyd-Jones, AstraZeneca, CatScI). The structural and electronic data generated for diverse ligands is also of interest more generally, helping to explain observed coordination and organometallic chemistry (Nataro, Pringle, Lynam). Accurate mechanistic studies provide a test bed for computational approaches (Harvey), as well as contributing to the growing understanding of catalytic manifolds (Lloyd-Jones, Harvey) and hence the design of new catalysts.



In addition, the project has contributed to the training and education of a number of undergraduate and postgraduate students, as well as that of several postdoctoral researchers, some of whom will continue to pursue a quantitative approach to catalysis in their careers.



Overall, this project has contributed to the development of a more quantitative understanding of ligand, and to some extent substrate, effects on the mechanism and efficiency of organometallic chemistry and this will continue to be developed and disseminated as additional publications are completed.
Sectors Chemicals,Education,Healthcare

 
Description Brief summary of outcomes and their impact for this project; details of publications, collaborations and staff development have been listed in other sections for this grant. This project has demonstrated that current resources allow us to study realistic examples of organometallic catalysis with the tools of computational chemistry. These detailed studies can be combined with parameters capturing the properties of a key variable in catalysis, ligands, to derive models for the interpretation and prediction of experimental results. In addition, ligand parameters can be used to design experiments to make efficient use of resources and generate the most useful results for prediction, and novel ligand structures can be evaluated computationally before their synthesis, allowing researchers to focus their efforts on the most promising outcomes. To date, this project has contributed to 17 peer-reviewed publications and the results have been disseminated at a range of conferences and seminars. The PI has been invited to present at 3 international (Gordon Conference (2012), Challenges in Computational Homogeneous Catalysis (2011), invited young plenary speaker at EuCOMC XVIII (2009) and one national meeting, as well as 4 research seminars (ICIQ, Bergen, York, Bristol) and has also contributed to national and international meetings through posters and talks. Existing collaborations have been strengthened (Orpen, Lloyd-Jones, Harvey, Pringle, AstraZeneca) and a number of new relationships with both academic (Nichols/Bergman/Elman, Nataro, Lynam/Slattery) and industrial researchers (Murray/CatScI) have been developed. In addition, funding for a number of new projects (Kamer/St. Andrews, Schafer/University of British Columbia, Frost/Bath, Higham/Newcastle, Spokoyny/MIT) is currently being sought. The project has also contributed to the training and education of a range of researchers at the University of Bristol: 13 undergraduate project students, 4 vacation project students, 1 PhD student (McMullin) as well as 1 postdoctoral researcher funded directly (Ridgway) and 2 PDRAs (Jover, Owen-Smith) involved with the Predictive Catalysis project. A third year undergraduate laboratory project introduces MSci students at Bristol to calculated ligand parameters, and several second year experiments have also been augmented with computational results (together with Harvey) to develop an appreciation of computational inorganic chemistry in the undergraduate population. Similarly, a course on applied computational chemistry (together with Harvey) has been developed for the Synthesis DTC and is open to all graduate students. . Beneficiaries: See collaborations, further funding and staff development sections: researchers in inorganic and organic synthesis, computational chemistry and industrial synthesis/process development Contribution Method: As detailed in the summary: through publications and conference presentations, training of students and researchers and collaborations with researchers in academia and industry. A new SME (CatScI Ltd.) also uses the concepts developed as part of this project and the Predictive Catalysis collaboration in their own consultancy work.
Sector Chemicals,Pharmaceuticals and Medical Biotechnology
Impact Types Economic

 
Description Design of Privileged Ligands - Enabling Catalysis for the Pharmaceutical, Agrochemical and Fine Chemical Industries
Amount £170,000 (GBP)
Organisation Government of Wales 
Sector Public
Country United Kingdom
Start 10/2012 
End 09/2014
 
Description Accurate computational mechanistic studies relevant to organometallic catalysis 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution We have been collaborating to establish the accuracy (cf. experimental data) which can be achieved for computational mechanistic studies of synthetically relevant homogeneous organometallic catalysts. This has led to multiple publications detailed elsewhere on the system. Prof. Jeremy Harvey is one of the leading computational chemists in the UK, with wide-ranging interests covering theoretical developments, atmospheric and organometallic chemistry as well as protein modelling. His expertise and shared staff resources have been invaluable in achieving the best and most reliable computations for the present project.
Start Year 2003
 
Description Cross-Coupling, Catalysts and Chirality 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution PhD project of Claire McMullin, joint supervision with A. Guy Orpen. PhD project funded from DTA and CCDC, jointly supervised, computational and structural chemistry
Start Year 2007
 
Description Ligand effects on spectroelectrochemistry 
Organisation Lafayette College
Country United States 
Sector Academic/University 
PI Contribution Low-level collaboration to share calculation result and contribute to publication. The Nataro research group had some interesting coordination chemistry/spectroelectrochemistry results on bulky bidentate P,P donor ligands and sought computational details (cited in an earlier publication) and input to help interpret their results. This resulted in a published paper.
Start Year 2011
 
Description Ligand prediction and design 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration with Paul Pringle and his research group has provided access to novel ligand designs as well as experimental data for the testing and validation of predictions from computational models. The collaboration has resulted in multiple outputs which have been uploaded elsewhere on the system. The group of Prof. Paul Pringle has contributed significantly to the design and development of novel P-donor ligands and their testing in homogeneous organometallic catalysis. This collaboration has provided access both to novel designs, some before their experimental realisation, and experimental results for the validation of predictions, as well as a test-bed for the structural and energetic accuracy of computational studies.
Start Year 2007
 
Description Ligand test set design and mechanistic study for Ru-catalysed C-O activation 
Organisation University of California, Berkeley
Country United States 
Sector Academic/University 
PI Contribution A postdoc in the groups of Bergman and Elman at UC Berkeley approached the Predictive Catalysis team with a request to add bidentate ligands to the relevant map. These results were used to support his experimental catalyst screening, but only a single ligand worked. To address this puzzling observation, a summer student in the Fey group undertook detailed mechanistic studies of the catalytic cycle. The project ended because funding for the Berkeley position ran out and the researcher moved out of academia. This served as an application example for one of the ligand databases as well as an opportunity to discuss experimental challenges when designing ligand screening experiments. When the experimental data gave puzzling results, we were able to undertake a detailed mechanistic study, providing a valuable training opportunity to both the summer student and Dr Nichols in computational studies of real catalysts, as well as allowing us to explore method effects and the accuracy of computed data.
Start Year 2009
 
Description Physical Inorganic Chemistry of Vinylidene and Alkyne Ligands 
Organisation University of York
Country United Kingdom 
Sector Academic/University 
PI Contribution Drs Lynam and Slattery at the University of York have established a programme of research into the organometallic chemistry of alkyne/vinylidene tautomers and the activation of catalysts with vinylidene ligands. This collaboration has sought to determine whether calculated ligand parameters can be used to aid prediction in this field. The addition of novel ligand types to existing databases is only warranted if the data can be validated against suitable experimental results and hence be used for making predictions about related experiments. This collaboration continues to provide access to such results for an interesting group of C-donor ligands and we are in the process of preparing a publication to showcase the results.
Start Year 2010
 
Description Predictive Catalysis (AZ) 
Organisation AstraZeneca
Country United Kingdom 
Sector Private 
PI Contribution The Predictive Catalysis project is a collaboration between several research groups at the University of Bristol (Lloyd-Jones, Orpen, Harvey, Fey) and members of the AstraZeneca Pharmaceutical Development team (Purdie, Murray, Hose, Osborne) - the two organisations will be treated separately on this system. The collaboration has led to multiple publications as uploaded to the system elsewhere, as well as to a secondment from the Lloyd-Jones group to AZ. This did not directly involve the present grant & PI, so no further details of the secondment have been added. Collaboration with the Predictive Catalysis project has added an industrial, application-led view to the research. In this context, maps of ligand space have been used for the design of high-throughput screening experiments, targeted at identifying areas of ligand space active in reactions of interest and making reliable predictions about ligands in close proximity.
Start Year 2006
 
Description Predictive Catalysis (UoB) 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution The Predictive Catalysis project is a collaboration between several research groups at the University of Bristol (Lloyd-Jones, Orpen, Harvey, Fey) and members of the AstraZeneca Pharmaceutical Development team (Purdie, Murray, Hose, Osborne) - the two organisations will be treated separately on this system. The collaboration has led to multiple publications as uploaded to the system elsewhere, as well as to a secondment from the Lloyd-Jones group to AZ. This did not directly involve the present grant & PI, so no further details of the secondment have been added. The Lloyd-Jones group has expertise in the experimental study of transition metal catalysed reactions and catalyst screening. This has provided the present project with access to accurate kinetic data for the validation of calculated mechanisms and statistical models. Predictions have been tested against such data, demonstrating that the ligand maps can be used to identify ?areas of activity?.
Start Year 2005
 
Description Property databases for ligands and solvents 
Organisation CatScI
Country United Kingdom 
Sector Private 
PI Contribution After closure of AstraZeneca's Avonmouth site, Dr Paul Murray, one of our collaborators on the Predictive Catalysis project, teamed up with colleagues to start a new venture, CatScI Ltd., based in Cardiff. The company offers consultancy and reaction optimisation services and continues to use ligand knowledge bases developed as part of the Predictive Catalysis project. In addition, a summer student in the Fey group explored the use of chemoinformatics descriptors for the quantification of solvent effects and these results have provided CatScI Ltd. with a demonstration example for their reaction optimisation approach. The collaboration provides an insight into industrial needs and concerns, as well as a training opportunity for the summer student.
Start Year 2011