Structural studies of atomic interactions in membranes: bridging the gap between physics and membrane biology

Lead Research Organisation: University of Oxford
Department Name: Biochemistry

Abstract

The focus of this work is observe the atomic and molecular interactions between molecules which comprise cell membranes. Cellular membranes are the gate-keepers of life. Life has evolved from single-celled organisms to more complex multi-cellular organisms partially because of the compartmentalization of cell membranes. In the last century one of the great challenges was to decode DNA - the molecular blueprint for life. In the next century one of the greatest challenges is to understand how membranes are formed and function; as they are not only everywhere but are also necessary to sustain life. Cell membranes control what can go into and out of the cell, the so-called 'molecular traffic' acting as gate-keepers. This role is important in controlling disease, disease and nutritional balance in different parts of the human body. This research proposes to look at the interactions between the molecules which make up biological membranes on the atomic scale, where one can see how individual atoms in different molecules interact with one another. This is important because it reveals the details of interactions and can inform us about how these interactions take place.

The techniques which will be used to see the atomic structure of membranes are neutron scattering techniques using the UK ISIS neutron facilities which are located at Rutherford Appleton Laboratories in Oxfordshire (UK) and managed by the UK government funded Science and Technology Facilities Council (STFC). Measurements of these molecules using neutrons shows the details of interactions between the different atoms present. Another technique which will be used is Nuclear Magnetic Resonance (NMR) which allows for different atomic aspects of the membrane to be seen. Combing this with computer models, we will be able to build a structure of the membrane which is atomically accurate.

Understanding membranes is important for a variety of reasons. First they are present in all plants and animals and indeed are one of the reasons that life exists. Understanding the structure of membranes is also needed to understand the regulation of cell activity and so this research will have a major impact on our understanding of the mechanisms of transport across the cell membrane, such as drugs and nutrients. The results of the study will aid descriptions of many of the things that membranes do, such as signal transduction - which is important in passing messages between brain cells and the body via molecules called neurotransmitters, the passage of drugs into cells and the effect of external influences on cells from toxins and antimicrobial agents.

Planned Impact

This research, which aims to understand the physics of membranes on a molecular scale, could have several different avenues of impact. Firstly a greater understanding of cell membranes is important to drug design. There is relatively little understanding of how drugs interact in the human body on an atomic length scale, in order to design drugs that target specific cells a portion of the cell membrane, the gate-keepers for the cell, must be able to recognize the drug. Understanding the way that molecules in the membrane interact with each other and the surrounding physiological environment is a step towards understanding how a putative drug might cross the cellular membrane. This project will also look at how the molecules that make up a cell membrane interact with things like hormones and peptides cross the cell membrane. Understanding mechanisms for crossing cellular membranes can further aid in pharmaceutical drug design.

The role of hydrophobic and hydrophilic forces - that is molecules that like water (such as salt) and molecules that tend to move away from water (like oil) in membranes is not well understood, even though the play an important role in conducting traffic across the membrane. The results from this work will shed light on the complex interplay between these forces that allow membranes to function. This will aid in our fundamental understanding of not only how existing membranes function but also in how membranes are formed in the first place. Understanding these forces will also help to aid in descriptions of biological phenomena such as protein folding and aggregation of harmful peptides which are thought to cause diseases such as Alzheimer's.

Publications

10 25 50
 
Description Co-Chair person Scientific advisory council - European Spallation Source
Geographic Reach Europe 
Policy Influence Type Participation in a guidance/advisory committee
URL https://europeanspallationsource.se/article/instruments-scope-endorsed-sac-concern-upgrade-follow-th...
 
Description Consultant to BIS concerning spending on the European Spallation Source
Geographic Reach National 
Policy Influence Type Membership of a guideline committee
 
Description Scientific Advisory committee European Spallation Source
Geographic Reach Europe 
Policy Influence Type Participation in a guidance/advisory committee
URL https://europeanspallationsource.se/science-advisory-committee
 
Description EPSRC Doctoral Prize
Amount £25,000 (GBP)
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 11/2017 
End 05/2018
 
Description Wellcome Trust Vacation studentship
Amount £2,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2012 
End 09/2012
 
Title New analysis tools 
Description We routinely use neutron diffraction and computation. We have developed a number of new analysis tools to investigate the structure of biological molecules in solution. We have done this in part through a collaboration with Dr. Luis Carlos Pardo in Barcelona 
Type Of Material Improvements to research infrastructure 
Provided To Others? No  
Impact We have begun to develop these tools and they have led to new and better analysis of our structures in solution 
 
Description Collaboration with Dr. Sam Callear - ISIS Facility STFC 
Organisation Science and Technologies Facilities Council (STFC)
Department ISIS Neutron and Muon Source
Country United Kingdom 
Sector Academic/University 
PI Contribution Running neutron diffraction experiments, analyzing resulting data, computational inputs, etc
Collaborator Contribution Use of the ISIS facility - beam time award (via peer-review proposal) at a nominal value of ~ £10,000/day
Impact 1 publication with more on the way
Start Year 2014
 
Description Collaboration with Prof. Phil Biggin 
Organisation University of Oxford
Department Atom Probe Research Group
Country United Kingdom 
Sector Academic/University 
PI Contribution MD simulations on drug molecules - cosupervision of students - neutron diffraction/NMR and Monte Carlo computer simulations by us
Collaborator Contribution MD simulations in Collaboration with Prof. Biggin, which has resulted thus far in a shared MSc student as well as a research publication
Impact Research publication (see Publication list)
Start Year 2014
 
Description New Colloboration with Dr. Luis Carlos Pardo, Spain 
Organisation University of Barcelona
Department Faculty of Physics
Country Spain 
Sector Academic/University 
PI Contribution New Collaboration with Dr. Pardo from University of Barcelona (Physics) for understanding and visualization of the structure of liquids in solution
Collaborator Contribution Dr. Pardo and myself are collaborating on several reserach publications where he has contributed greatly to our data analysis techniques.
Impact I am placed in the Department of Biochemistry and Dr. Pardo in the Department of Physics. This collaboration, thus far, has resulted in publications with many further to come
Start Year 2013
 
Description New collaboration at Oxford - Prof. Christina Redfield 
Organisation University of Oxford
Country United Kingdom 
Sector Academic/University 
PI Contribution I have developed a collaboration with Prof. Christina Redfield to use solution state NMR techniques to assess the structure of biomolecules (membrane components and peptides) in solution
Collaborator Contribution Prof. Redfield and myself have published a paper using NMR techniques combined with neutron scattering. Prof. Redfield is an expert in NMR techniques and has contributed greatly to further reserach in my group
Impact Thus far this collaboration has resulted in the publication of one paper in Angewandte Chemie.
Start Year 2011
 
Description New collaboration with Prof. Cait MacPhee (University of Edinburgh) 
Organisation University of Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution A new collaboration is being developed with Prof. Cait MacPhee (Physics, Edinburgh) to investigate the role of water structure in amyloid fibril formation. A new collaboration is being developed with Prof. Cait MacPhee (Physics) at the University of Edinburgh. To this end, I have submitted to ask for further funding via the New Directions EPSRC remit, which was rejected
Collaborator Contribution Prof. MacPhee and myself have collected neutron scattering data on amalyoid fibrils where the analysis is still underway
Impact No outputs as of yet
Start Year 2011
 
Description Ongoing collaboration with Dr. Christian Lorenz (King's college london) 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution Have collaborated with Dr. Lorenz on a wide variety of publications
Collaborator Contribution MD simulation expert
Impact 9 publications as of 2016 - with likely more to come
Start Year 2010
 
Description BBC local radio - ask an academic spot 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Live discussion on 'ask an academic' spot - BBC Oxford Radio.

none that I am aware
Year(s) Of Engagement Activity 2012
 
Description BBSRC Tools and Development Research Fund Panel 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Panel member for BBSRC tools and development panel
Year(s) Of Engagement Activity 2018
 
Description Biomolecular Solutions Advanced School Seminars (IOP, Cambridge) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Invited lecturer at the Institute of Physics, 'Solutions in the Spring' Advanced School in Cambridge.

Students were engaged and seemed to have a much greater understanding of neutron scattering
Year(s) Of Engagement Activity 2014
URL http://softmat.net/t2t_products/advanced-school-soft-condensed-matter-solutions-spring-2014/
 
Description Circling the Square 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Invited panel contributor at a science, politics and society conference.

None
Year(s) Of Engagement Activity 2014
 
Description Co-Chairperson European Spallation source 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Co Chairman of the scientific advisory panel for the European Spallation Source, where as a committee of 24 we approved instrumentation to be built at the ESS

Structure of the ESS is decided by this committee - affecting all neutron science in Europe and internationally
Year(s) Of Engagement Activity 2015
URL https://europeanspallationsource.se/science-advisory-committee
 
Description EPSRC funding panel 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact EPSRC UKRI award panel
Year(s) Of Engagement Activity 2018
 
Description Friday evening discourse, Royal Institution of Great Britain 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Friday evening discourse at the Royal Institution of Great Britain on the Group's research (subsequent video released on the web)
Year(s) Of Engagement Activity 2017
URL http://www.rigb.org/whats-on/events-2017/february/public-water-and-proteins
 
Description Interview with Oxford Times 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Supporters
Results and Impact Interviewed as part of a 'meet a scientist series' in the Oxford Times Magazine.

Interview by Richard O Smith appeared in the monthly August addition of the Oxford Times

None
Year(s) Of Engagement Activity 2012
 
Description Invited talk at University of Leeds (Physics) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Talk at University of Leeds Physics Seminar Series.

None
Year(s) Of Engagement Activity 2012
 
Description Member, Scientific Advisory Committee for the European Spallation Source (Lund, SE) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? Yes
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact One of 20 international members to advise on instrumentation and design of the commissioned European Spallation Source in Lund, SE . Awarding Body - European Spallation Source, Name of Scheme - Scientific Advisory Council Membership

Decisions were made by the panel about which instruments to be commissioned at European Spallation Source
Year(s) Of Engagement Activity 2013,2014
URL http://europeanspallationsource.se/science-advisory-committee
 
Description Merchant Taylor's School 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Invited talk about research Merchant Taylor School London
Year(s) Of Engagement Activity 2017
 
Description Molecular Spectroscopy User Group Chairperson 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? Yes
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact I was appointed the Molecular Spectroscopy User Group Chairman for the ISIS Facility (STFC, UK) . Awarding Body - ISIS (STFC, UK), Name of Scheme - User group chairperson

None
Year(s) Of Engagement Activity 2011,2012,2013,2014,2015
 
Description Oxford Sci Bar (April 2015) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Talk sparked good discussion/etc

Further invites for pub talks to the general public
Year(s) Of Engagement Activity 2015
URL http://www.oxfordscibar.com/whois-dr-sylvia-mclain.html
 
Description Panel Discussion - Does society value science? 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Panel discussion on science and religion - Harwell Science Campus
Year(s) Of Engagement Activity 2017
 
Description Panel on Science and Religion to 6th formers 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Panel debating the difference in science and religion at Norwich Cathedral
Year(s) Of Engagement Activity 2016
 
Description Panel on Science and Society - Southbank Centre London 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Panel on Science, religion and society - for the Belief and Beyond Belief Festival at the Southbank Centre in London (Feb 2 - 4)
Year(s) Of Engagement Activity 2016
URL https://www.southbankcentre.co.uk/whats-on/festivals-series/belief-and-beyond-belief
 
Description Particals and Proteins - video on research made by the Royal Institution of Great Britain 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Film created about the group's research using the ISIS facility on protein folding by the Royal Institution of Great Britain
Year(s) Of Engagement Activity 2016
URL https://youtu.be/uSErKi_HWg8
 
Description Skeptics in the Pub (Ada Lovelace day) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Talk sparked much discussion and attention

Further invitations to public speaking activities (Skeptics in the Pub series)
Year(s) Of Engagement Activity 2014
 
Description Skeptics in the Pub (Reading) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Much interest in the talks/many question.etc

N/A
Year(s) Of Engagement Activity 2015
URL http://reading.skepticsinthepub.org/Event.aspx/5763/Science-What-does-is-really-mean-to-be-scientifi...
 
Description Soap Box Science 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Lots of interest from members of the general public to ask questions about general science. Very nice discussions and highlighting women in science without directly doing so.

N?A
Year(s) Of Engagement Activity 2015
URL http://soapboxscience.org/?p=2114
 
Description Talk about Impact (ICNS, Edinburgh) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk sparked much discussion

N/A
Year(s) Of Engagement Activity 2013
 
Description Talk at London Collegiate School for Girls 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact 60+ pupils attended a public talk
Year(s) Of Engagement Activity 2017
 
Description The Importance of water (St. Peter's College Alumni Magazine) 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Article about the group's research in St. Peter's College Magazine


N/A
Year(s) Of Engagement Activity 2015
URL http://issuu.com/spcoxford/docs/st_peter_s_cross_keys_2015_issuu
 
Description The physics of how drugs cross into the brain - Physics MasterClass University of Nottingham 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Undergraduate students
Results and Impact Outreach activity Physics Masterclass -for teaching new techniques to post-grads
Year(s) Of Engagement Activity 2016
 
Description UKRI Physical Sciences Physics of Life funding panel 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Funding allocated for Physics of Life awards
Year(s) Of Engagement Activity 2019
 
Description What does it mean to be scientific (Oxford Skeptics in the Pub) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact interested audience/good discussion

More invites for public speaking
Year(s) Of Engagement Activity 2015
URL http://xford.skepticsinthepub.org/Event.aspx/2561/-Science-What-does-is-really-mean-to-be-scientific...
 
Description Women in Science Panel 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Women in Science wikipedia Edit-a-thon discussion panel.

A greater awareness of the dearth of women in STEM subjects
Year(s) Of Engagement Activity 2012