Generation of Alkaloid Diversity Using Biocatalysts

Lead Research Organisation: John Innes Centre
Department Name: Biological Chemistry

Abstract

Organisms in the environment - plants, bacteria and fungi - make a wide variety of complex molecules known as natural products. These organisms use biocatalysts (enzymes) to construct complicated molecules from simple starting materials. Broadly speaking, by understanding how enzymes work, we can improve our ability to manipulate and "re-engineer" biocatalysts so that we can use them for our own purposes. Biocatalysts have proven to be an exceptionally environmentally friendly strategy to produce molecules on both laboratory and industrial scales, but have only been utilised for a very small group of enzymatic reactions. We envision that our proposed work will make biocatalytic approaches to synthesizing certain alkaloids, namely the indole containing tetrahdro-beta-carbolines, more accessible. Additionally, the successes and failures of our proposed experiments will inform our group and others about the principles behind successful enzyme engineering. Finally, from a fundamental perspective, the work described in this proposal will provide insight into the reaction mechanism of the enzymatic and corresponding chemical transformations.

In Objective 1 of this proposal we describe approaches to modify the substrate scope of certain enzymes to generate more broadly utilisable biocatalysts. We first focus on a plant enzyme called strictosidine synthase, which catalyzes the Pictet-Spengler condensation, a reaction that is widely used to generate both synthetic and natural products with a wide range of uses in medicine and industry. Ultimately we plan to generate several Pictet-Spengler catalyzing enzymes that have a range of substrate specificities and stereoselectivities. Moreover, we have preliminary data that suggest that these experiments will demonstrate how the Pictet-Spengler enzymatic reaction uses a unique resolution mechanism to achieve stereoselectivity. We next focus on halogenating enzymes that can derivatize the indole ring. While these enzymes normally halogenate tryptophan, we propose mutations that will expand the substrate scope of the catalysts so that they can be more broadly utilized, particularly in combination with the Pictet-Spengler catalysts described earlier in the proposal.

In Objective 2 of the proposal, we describe strategies to use these catalysts to generate novel alkaloids. We will transform these catalysts into plant tissue that normally produces monoterpene indole alkaloids, so that we can explore the prospects of generating complex "unnatural" indole alkaloids with altered stereochemistry and halogenation patterns. Secondly, we explore how effectively yeast strains expressing these enzymes can convert simple achiral starting materials into optically active chlorinated tetrahydro-beta-carboline alkaloids on a large scale.

Planned Impact

WHO WILL BENEFIT FROM THE RESEARCH, AND HOW? The outputs of this research will shed light on how an enzyme that catalyses a Pictet-Spengler reaction and a halogenation can be re-engineered to turn over a broader range of reactions. Being able to engineer a protein scaffold to catalyse a host of catalytic reactions will provide us and other researchers with the requisite tools for a host of industrial applications. From a fundamental perspective, this research will provide the academic community with new hypotheses about protein design and mechanism to apply to a host of other enzymatic systems. These natural products have a broad scope of potential applications that can be used to benefit human welfare and the UK economy across several sectors.

WHAT WILL BE DONE TO ENSURE THAT THEY HAVE THE OPPORTUNITY TO BENEFIT FROM THIS RESEARCH? Academic research at the John Innes Centre (where PI O'Connor will be working) and at UEA that has potential commercial application is patented through Plant Biosciences Ltd. (PBL), a technology transfer company based at JIC that is jointly owned by the BBSRC, the John Innes Centre, and the Sainsbury Laboratory. The purpose of Plant Biosciences Ltd. is to bring the results of research in plant and microbial sciences at the Centre into use for public benefit through commercial exploitation. Moreover, the John Innes Centre and UEA have a long history of involvement with industry, particularly in the area of understanding and manipulating of metabolic processes. I am also actively working to engage with industry. I am meeting with several multi-national companies over the next 6 months where I will discuss the general aims of my research program, and explore whether a potential industrial collaboration is possible.

Publications

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Related Projects

Project Reference Relationship Related To Start End Award Value
EP/J012947/1 03/12/2012 30/09/2014 £367,325
EP/J012947/2 Transfer EP/J012947/1 01/10/2014 30/11/2015 £184,999
 
Description THIS GRANT IS LISTED THREE TIMES IN RESEARCHFISH, ONCE IN THE BBSRC SECTION AND TWICE IN THE EPSRC SECTION.
We have developed new ways to halogenate high value alkaloids and derivatize them further. This has substantial impact in terms of being able to produce new to nature compounds with potential use to industry. We have taken this research forward by continuing to use heterologous production platforms to generate novel halogenated plant natural products. We have also taken the Pictet SPengler work and are currently using it to discover a new class of Pictet Spenglerase in medicianl plants; this work is funded by the ERC.We have developed new ways to halogenate high value alkaloids and derivatize them further to make high value compounds.
Exploitation Route This work can expand the usefulness and applications of plant derived natural products.
Sectors Chemicals,Manufacturing, including Industrial Biotechology

 
Description Buell Group Bioinformatics 
Organisation Michigan State University
Country United States 
Sector Academic/University 
PI Contribution The Buell group has provided sequencing and bioinformatics support for our plants. We do the functional characterisation and biochemistry.
Collaborator Contribution The Buell group has seqeunced plants for us, assembled genomes/transcriptomes/annotated them, provided extensive bioinformatics support.
Impact Numerous papers (see publications); an NSF grant from the USA; an extensive database of plant sequence data; more papers underway
Start Year 2009
 
Description Transporter Collaboration 
Organisation University of Copenhagen
Department Department of Plant and Environmental Sciences
Country Denmark 
Sector Academic/University 
PI Contribution Collaboration with University of Copenhagen PIs Barbara Halkier and Hassam Nour Eldin. They perform biochemical assays with plant transporters that we have identified.
Collaborator Contribution They performed assay of transporters in oocytes.
Impact Publication in Nature Plants in 2017
Start Year 2016
 
Description Talk at Kew Gardens 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact A Kew organized event called "State of the World's Plants"
Year(s) Of Engagement Activity 2017