Nanoscale organisation of water and ions at bio-interfaces: consequences on anti-infective peptide adsorption

Lead Research Organisation: Durham University
Department Name: Physics

Abstract

Recent findings have shown that water and simple metal ions can spontaneously create correlated, ordered networks at the surface of minerals in solution. Preliminary results based on atomic force microscopy (AFM) suggest that similar effects occur at the surface of lipid bilayers. Due to the soft nature of biointerfaces, the existence of ordered interfacial water/ion structures would have deep implications for regulating biomembranes' mechanical properties, shape and local fluidity. It would also have implications in mediating the interactions of membrane-binding molecules such as biomarker, drugs and peptides, and for charge transfer in bioenergetics.
This proposal exploits recent advances in the field of AFM to explore the interplay between the local structure of the interfacial liquid (water and ions) and the behaviour of model membranes when undergoing a phase transition. The study will be conducted by AFM in solution and with molecular or single hydrated ion precision. The results will provide sub-nanometre maps of interfacial liquid structures, track their evolution locally as the membrane undergoes a gel to fluid transition, establish their influence on the membrane properties (elasticity, fluidity), and quantify their implications in mediating the adsorption of anti-invective peptides.
In the first part of the project, specific regions of the bilayer surface will be imaged and probed (mechanical properties mapping) by AFM while the temperature of the solution is progressively increased using a precise environment controller. The mutual effect that the melting membrane and the interfacial ionic structures have on each other will be monitored throughout the process, including upon subsequent cooling of the membrane. The proposed research examines the influence of parameters such as membrane lipid composition and the type of ions present in the solution on the formation and evolution of interfacial structures. Interfaces involving binary mixtures of dissimilar lipids will also be studied in order elucidate the role played by membrane physical and chemical singularities such as domain edges on interfacial processes.
Subsequently, the influence of interfacial effects on membrane-binding peptides will be studied in biologically relevant conditions. Experiments will be conducted in the presence of antimicrobial/anti-infective peptides (Temporins) known to insert into the membrane. The goal will be to determine whether the interfacial effects observed in the previous phases of the project can influence the nanoscale interactions between antimicrobial peptides and membranes, in particular the binding and subsequent insertion of single peptides. The process will be carefully monitored, starting from gel-phase membranes (no insertion) to fluid membranes, paying particular attention to the spatial location of inserting peptides and a potential temporal correlation with a prior interfacial singularity.
The findings of this project will be highly novel and are likely to provide the first direct observation of interface-mediated processes at biointerfaces.

Planned Impact

The proposed research will impact different groups of people in the UK and internationally. The main potential beneficiaries are academic researchers, the pharmaceutical industry, the scientists directly involved into the project, and, on a longer term, society as a whole.

(i) Academic researchers (immediate impact)
Results from the proposal will rapidly impact across several fields of research such as molecular biophysics, membrane biology, physiology, medical sciences and bio-nanotechnology. The main impact stems from the ability to objectively quantify the influence of interfacial water and ions on biological interactions and molecular processes at interfaces. Results will contribute towards a better understanding of biological interfaces, and help build a more complete picture. They should open new research avenues for the research community and provide experimental basis for the development of mesoscopic scale (1nm-100nm) computer simulations.
Findings will also impact medical research, in particular the development of anti-infective, anti-bacterial and anti-microbial peptides. Most drugs currently available on the market target biomembrane (membrane proteins) but the effect of the interfacial liquid is usually ignored. Research initiated by the proposed work will provide important information towards the development of the next generation of antibiotics that takes into account or even exploits the interfacial liquid.
In bio-nanotechnology research, results could provide additional parameters in the development of lipid-based structures with a set of desired properties, either structural or interfacial. Results could be extended to liquid-based self-assembly of synthetic soft matter systems, for example in organic and polymer chemistry.
The academic community is usually best reached through scientific publications, conferences and workshops. High-profile open access publications as well as multiple presentations at international conference in the UK and abroad have been planned in order to best disseminate the project's results. All papers and datasets will be made freely available through the Durham University (DU) online repository. Additional cross-disciplinary dissemination and discussions will be achieved by the means of short workshops held by the DU Biophysical Science Institute, and that gathers scientists from biology, physics, chemistry and mathematics. These types of interdisciplinary workshops have been highly successful in the past.

(ii) Industry (5-10 years)
Pharmaceutical research and hence companies producing drugs are likely to benefit from the proposed research. The impact is however expected on a longer term and will depend on efficient dissemination and acceptance of the results by the academic community. The emphasis has therefore been placed first on academic impact.

(iii) People directly involved in the proposal (immediate)
The project will be conducted by a postdoctoral research assistant (PDRA) with help from the PI. Given the novelty and the large potential impact of the findings on the scientific community, this project should strongly benefit their careers. The PDRA will be working in a highly interdisciplinary environment and will be able to broaden his/her knowledge on each aspect of the project. (S)he will be presenting his/her results at conferences, and will be eligible for a large selection of postgraduate courses available at DU. His/her training will equip him/her with a highly valuable set of skills: expertise with atomic force microscopy measurements in liquid, molecular biophysics, biomembranes, and basic knowledge of peptide research.

(iv) Society as a whole (> 10 years)
In the long term, society will benefit from the proposed research and its consequences mainly through improved medical and pharmaceutical research. A better understanding of biointerfaces may also make its way to the education system, for example in biochemistry textbooks.

Publications

10 25 50
 
Description Research conducted on this grant has demonstrated that ions and water molecules adsorbed at the surface of lipid bilayers can modulated not only the mechanical properties of the bilayer but also its ability to interact with surrounding molecules, for instance anti-infective peptides. Our results suggest that this modulation occurs spatially on the nanoscale (10-20nm) and evolve slowly on the second timescale. This effectively provides biological membranes with a simple mechanism to modulate function without complicated chemistry. Further developments have also demonstrated this effect to impact membrane curvature on small lipid vesciles, with potential implications for biomedicine (extracellular vesicles)
Exploitation Route Further studies will have to first investigate how the effect reported here generalise over a whole composition diagram of ternary membranes (e.g DOPC/DPPC/Cholesterol) and at different temperatures. The effect of physical contact between the bilayers and bio-membrane and any supporting structure (synthetic or natural) will also have to be studied, in particular with respect to the resulting local changes in the membrane's properties. Another important aspect to be looked into the ability of such localised changes to induce curvature, and guide embedded molecules to given location.
Sectors Agriculture, Food and Drink,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description Interview for open access science advocacy. The interview was recorded by Durham University Library and made publicly available on the internet
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://dulibhome.wpcomstaging.com/2019/10/23/open-access-week-focus-on-the-benefits-of-open-access-...
 
Description EPSRC Fellowship
Amount £1,171,291 (GBP)
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 10/2019 
End 09/2024
 
Description Anti-infective peptides and peptoids 
Organisation Durham University
Department Department of Psychology
Country United Kingdom 
Sector Academic/University 
PI Contribution Dr Steven Cobb, Dr Hanna Bolt (provision of fully characterized peptides and peptoids) Myself/my team (investigation of the interaction of peptides/peptoids with model membranes)
Collaborator Contribution Contributions were both material (provision of new samples of peptides and peptoids) and scientific (discussions of interesting questions and novel ideas for future investigations)
Impact Interdisciplinary collaborations between physics and biochemistry. Most of the work is still on-going
Start Year 2016
 
Description DNA nanostructures 
Organisation University of Newcastle
Country Australia 
Sector Academic/University 
PI Contribution Me/my team: characterization of the nanostructures, including interaction with the surrounding
Collaborator Contribution Newcastle (Dr Torelli): provision of designer DNA/RNA nanostructures
Impact On-going.
Start Year 2016
 
Description ICSMP27 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact International conference in the field of microscopy and interfaces. This also acts as a platform for networking and developing novel collaborations. After a week-long meeting, I left with new contacts and projects being developed.
Year(s) Of Engagement Activity 2019
 
Description IMDEA madrid 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Broad interdisciplinary discussion about the future of nanoscience and emerging novel aspects
Year(s) Of Engagement Activity 2018
 
Description Launch of WPI NanoLife Science Institute - Kanazawa University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact Presentation at the launch of a national centre in Japan (£10 millions/year for 7 years budget). The topic is 'Nano Life Science' and the event invovled presentations and discussions with students, scientists and third party organisations
Year(s) Of Engagement Activity 2017
 
Description MMC2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Research update in the field of microscopies, taking place every other year. With more than 2000 participants across multiple fields, it allows for stimulating discussions and exchanges
Year(s) Of Engagement Activity 2019
 
Description MMS presentation 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Largest microscopy conference held in the UK (Manchester). The presentation sparked questions and discussion as well as multiple invitations to further discuss the findings at various institutions
Year(s) Of Engagement Activity 2017
 
Description MRS meeting Boston (virtual) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact MRS is a major event in the field taking place every year in Boston. This year is was help virtually with presentations uploaded in advance (invited contribution). The presentations were used as a base to engage a broader conversation with the community and I actively participated (as a panel member) to a discussion about the recent advances and directions in the field
Year(s) Of Engagement Activity 2020
URL https://www.mrs.org/meetings-events/fall-meetings-exhibits/2020-mrs-spring-and-fall-meeting
 
Description NanoInBio 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Conference and discussion on the impact of nanotechnologies over bio-technologies (including how to maximise and control this impact). This resulted in discussions and novel collaborations
Year(s) Of Engagement Activity 2018
 
Description Nanofluidics in biological systems 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact 3-days workshop aimed at bringing together research and non experts around the emerging topic of nanofluidicis in biological systems. The main outputs are the set up of an active group, collaborations and new sense of research community
Year(s) Of Engagement Activity 2017
 
Description Online Scientific Presentation - Edinburgh University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Scientific presentation followed by a debate on the topic of water at biological interfaces, in particular for the case of microbes. The discussion followed on the topic of ion dynamics and the implications for interactions with therapeutics. This resulted in an animated discussion with the audience and followed on with a collaboration
Year(s) Of Engagement Activity 2021
 
Description Online Scientific Presentation - Oxford University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Undergraduate students
Results and Impact Scientific discussion followed by a Q&A aimed at senior undergraduate students and postgraduate students. Discussions followed with ideas for possible collaborations
Year(s) Of Engagement Activity 2021
 
Description Organisation of a workshop on nanoscale fluidics 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A 2-day workshop was organised on the theme of nanofluidics in science and industry. The workshop was open to the general public and made accessible (content) to a broad, non-specialist audience. Many students attended and created lasting links with the speakers from all across the UK
Year(s) Of Engagement Activity 2016
 
Description PoL summer school 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Presentation at a summer school with the view of enticing and opening a scientific debate with students. The presentation triggered interested discussions
Year(s) Of Engagement Activity 2019
 
Description Saturday Morning Science 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact General outreach talk aimed at the broader public on the topic of soft matter. The lecture involved 3 different academics covering complementary aspects of the topic. I coordinated the contributions and arranged for demonstrations. Several public members requested the slides of the lectures (specially provided afterwards) for presentations at local organisation.
Year(s) Of Engagement Activity 2019
URL https://www.dur.ac.uk/physics/satmornscience/
 
Description Seminar Cambridge 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presentation of cutting edge results to a group of scientists at Cambridge university. This sparked discussions and debates
Year(s) Of Engagement Activity 2016
 
Description Soft Comp Venice 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presntations and discussions around a series of broad topics. The discussions intitated novel prespectives and stimulated the exploration of different lines of research
Year(s) Of Engagement Activity 2017
 
Description SoftComp conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presentation entitled "Supported lipid bilayer at the nanoscale" to an interdisciplinary audience which sparked questions and discussions afterwards and several durable contacts with academics abroad.
Year(s) Of Engagement Activity 2016
 
Description Summer course Harbin 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact Summer course given at Harbin Institute of Technology to explain basics aspects of soft matter and its implications in everyday life
Year(s) Of Engagement Activity 2016
 
Description Visit Nancy 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Research presentation and discussions taking place over 2 days and invited by the University of Nancy. Multiple academics and students from different fields of science participated actively. The outcome is a new collaboration.
Year(s) Of Engagement Activity 2019