Direct observation and characterisation of physical autocatalysis by interferometric scattering microscopy

Lead Research Organisation: University of Oxford
Department Name: Oxford Chemistry

Abstract

Autocatalytic chemical reactions have been extensively studied with the aim of providing insight into the principles underlying living systems. In biology, organisms can be thought of as imperfect self-replicators, which produce closely related species, allowing for selection and evolution. Autocatalysis is also an important part of many other biological processes.

This project aims to develop new autocatalytic reactions where two simple chemical building blocks come together to give a more complex product, and then the product aggregates to give primitive cell-like structures or "protocells" such as micelles or vesicles. The protocells allow the starting materials to mix more efficiently, speeding up the reaction in time and giving rise to complex behaviour of the protocells. A new ultra sensitive microscope will be used to monitor the formation and dynamics of the protocells in real time. These reactions will serve as model systems which we hope will contribute to understanding how complex cell-like systems can emerge from much simpler chemical components and may be relevant to understanding the principles of how life started on earth.

Planned Impact

The potential economic and societal benefits of this work will likely arise from an increase in understanding of how some complex systems work, the new technologies that are available for ultra-high resolution imaging, and the development of new model systems for living cells.

Life is the most prominent example of a far from equilibrium state, and elucidating the nature of the subtle organizing principles upon which such systems operate is an enormous challenge. The overall objective of the work is to understand complex phenomena related to complex emergent systems where we aim to design and study new systems and then to use the lessons learned in this process to establish rules for how these systems work, to see if we can observe novel phenomena, to understand what factors control these systems, and to see if these systems can be tuned rationally. This work aims to deliver a real advance in the rational design of complex cell-like materials from simple chemical building blocks and is likely to open up completely new avenues of research. Understanding how complex collective behavior can spontaneously emerge is (as mentioned in other sections of this application) relevant to two EPSRC and one U.S. Department of Energy, Grand Challenges. While the impact of understanding the appearance of states far from equilibrium may not be felt for sometime, this area of research is likely to enable new arenas of experimentation, control and modelling.

More immediate beneficiaries of this research may arise from the unique imaging capabilities of iSCAT. We are exploring in which ways the capabilities of iSCAT outperform the current state-of-the-art in label-free biosensing. Surface plasmon methods are a well-developed and important technology with numerous industrial applications. iSCAT not only promises orders of magnitude higher sensitivities down to the ultimate single molecule limit, but also three orders of magnitude faster response times (10 kHz) compared to state-of-the-art SPR sensing (10 Hz), which would enable studies of a completely new variety of protein-protein interactions. The work proposed here will be instrumental in not only demonstrating the sensitivity of the technique, but also its versatility. In this context, we aim to use the results obtained here to approach major players in the surfactant industry where iSCAT could provide completely new insight into the dynamics of nanoscale objects in solution.

This research could lead to advanced materials in the form of cell-like systems that are capable of performing a function. The 'protocells' developed here exhibit complex dynamics and understanding and controlling this behaviour holds tremendous potential in terms of synthetic biology and developing model systems. Chemical models of cells that can mimic living systems will serve as useful models in mathematics, physics, chemistry, biology, nano-technology and medicine. In the long term, the development of such devices could potentially bring benefits to high-tech manufacturing, as well as medical researchers, clinical scientists and ultimately their patients. The long term benefits from understanding how construct and control dynamic systems similar to living cells are potentially huge to the economy of the UK. "Synthetic Biology for Growth" is a programme supported by the RCUK and has been identified as one of the "Eight Great British Technologies of the Future". Understanding how to design life-like systems could have tremendous implications in terms of quality of life and health.

Publications

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Description We have developed and studied a series of autocatalytic reactions that mimic - at a very basic level - how replication occurs in biology. We designed and created system involving micelles - much like the structures seen in soapy water - which can undergo a process of replication by continuously constructing the building blocks which create their membrane-like structures.
Our initial research started with the basic questions - if, and how, this could be done - and how it would be possible to measure the system - as chemical reactions are occurring on the nano-scale, and larger soap-like bubbles are on microscopic scales, and the most typical methods to study chemical reactions and 'soap like materials' would not be appropriate for measuring these processes which occur on two different length scales.
After devising chemical reactions that behave essentially in the expected way, we then studied what variable were necessary in order to see self replication, and then designed subsequent generations of systems that use different chemistry, and therefor show different replication dynamics on both the molecular and supramolecular scale.
Using a new microscope technology (interferometric scattering microscopy) we were able to monitor the reactions' supramolecular dynamics on the scale of nanometers, essentially we are able to count the number of tiny self-replicating soap bubbles in time and see where they form. We were also able to observe a whole series of unexpected but really interesting and complex dynamic phenomena that emerges from this system, particularly at the interface where water boarders another phase such as an oil or solid.
The self-replication structures studied here are obtained by simply mixing a few chemicals in water, and they really do have some characteristics that resemble primitive living systems, at least to the eye and in the basic chemical behaviour observed.
These results raise a whole series of new questions about what life is, and how simple can life be, and how is it possible to measure and define (at a very basic level) the difference between a living and a non-living system.
Further research focuses on how we can make even more-life like systems now by creating more complex and emergent systems which are not only able to replicate but to stay 'alive' for longer periods, and which may be able to adapt and evolve.
Exploitation Route Learning how to create complex, dynamic and life-like systems is a key modern scientific goal. While our research involves very simple chemicals it demonstrates that self-reproducing systems featuring some of the basic characterises of actual living systems can essentially 'spontaneously' emerge from properly choosing the chemical reaction partners, it is anticipated that this basic knowledge will be of use to others trying to understand how to make complex functional systems that may be key to future generations of technology.

This work was also instrumental in pushing the technological aspects of label-free imaging using interferometric scattering microscopy in terms of broad applicability and sensitivity. It contributed significantly to further studies, which ultimately led to a spin-out company (Refeyn Ltd), which, having been founded in July 2018, is selling microscopes similar to that described herein, has 16 employees and is exploring broad applications of the technology in both research and pharma. Similar experiments were also performed as part of a follow up publication (Young et al. Science 2018)
Sectors Aerospace, Defence and Marine,Chemicals,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description ERC Consolidator Grant
Amount € 2,278,073 (EUR)
Organisation European Research Council (ERC) 
Sector Public
Country Belgium
Start 06/2016 
End 05/2021
 
Company Name REFEYN LTD 
Description The company sells extremely high resolution microscopes and is exploring broad applications of this technology in both research and Pharma. 
Year Established 2018 
Impact The company is new, but has attracted significant recent investment
Website https://www.aragobio.com