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Development of a Comprehensive Toolkit for Optimised Tissue Regeneration: Scaffold DOCTR

Lead Research Organisation: University of Cambridge
Department Name: Materials Science & Metallurgy

Abstract

Although there has been an explosion of interest in the development of biomedical scaffolds over the past 15 - 20 years, the repair and regeneration of tissues is not always successful. The ability of the scaffolds to deliver cells to aid and guide the repair process, is limited their capacity to retain and encourage the appropriate cell types for optimised repair. Furthermore, the structural complexity and heterogeneity of many soft tissues demand matching scaffold architectures, which current technologies cannot produce.

We believe that is it possible to develop a "design Toolkit" for bespoke, personalised cell-based therapies to ensure optimised treatment of a range of different diseases. In order to test our hypothesis, we aim to address the specific issues in scaffold development for three contrasting, demonstrator applications: cardiovascular devices, dermal grafting and nerve guidance. Each of these applications presents different structural and biochemical challenges, which we aim to address using specifically designed three dimensional biomacromolecular environments.

The underlying technology will be based on ice-templated collagen-based scaffolds. The pathway through the project is the acquisition of knowledge, first about the three dimensional architectures required for optimised cell infiltration through the scaffold, then about the nature of the specific cell binding interactions with the scaffold surfaces. We will create cell-selective surfaces, by the incorporation of receptor-reactive collagen-derived triple helical peptide sequences to control cell reactivity and direct them towards specific regulatory receptors. We will investigate heterogeneity in scaffold architectures and then consider the creation of structures with spatially varying cell binding characteristics based on variations in the intrinsic chemistry of the scaffold struts. By considering optimised properties specific to each application, we will demonstrate the potential of the Toolkit for developing refined and targeted scaffolds with increasing levels of complexity.

The mechanism for this Fellowship is novel: for the first time, an EPSRC Fellowship will be based on a "job share" style arrangement with two PIs. For about 10 years the PIs have jointly run the Cambridge Centre for Medical Materials, both having part time contracts based on their family commitments. This joint which would be a 60% FTE fellowship split evenly between Professors Best and Cameron and reflects a forward-thinking approach by EPSRC based on Equality and Diversity considerations.

Planned Impact

We propose a programme of underpinning science, which, once completed, will have huge potential economic and clinical impacts. At the end of the grant we plan to be in a position to apply for translation grants to take these forward. During the grant, we will take action to make sure that information is generated, protected and disseminated in ways appropriate and consistent with the needs of future regulatory approval, future commercialisation, and clinical translation.

Enhancing quality of life and health
We envisage that there will be downstream, post-grant benefits to patients in three demonstrator areas:
Heart failure:- One in four patients develop heart failure following myocardial infarction with ~50% mortality over 5 years contributing to the ~550,000 patients in the UK with heart failure in 2013. The development of a patch with the required combination of materials and biochemical properties to attract and retain stem cells will revolutionise cardiac repair.
Peripheral nerve repair:- Our neural repair strand is designed to create a conduit for axonal growth across a nerve gap. Clearly, the potential benefit to patients is huge, if control and movement can be restored.
Non-healing wounds:- A significant number of diabetic neuropathic ulcers, vascular insufficiency ulcers and pressure ulcers do not heal adequately with standard wound care lea to prolonged morbidity, limb amputation and increased risk of mortality. Dermal repair constructs, based on the appropriate materials structures and biochemistry will offer potential solutions.

Fostering global economic performance
Potential market size :- There is a substantial potential market in each demonstrator application. The current global cardiac patch market has been reported to be valued at $33m, and the total market opportunity for a time-of-surgery implant for heart failure is around 110,000 patients pa in the EU and US. Estimates suggest that around 700,000 peripheral nerve repair surgeries are performed every year worldwide, the global market being worth $4.1 billion in 2012. In the field of skin and soft tissue substitutes, the financial burden of venous ulcers alone is estimated to be $2 billion per year in the United States. The global market for wound-care was valued at over $15bn in 2014.
Exploitation of IP:- Protected IP will have the potential to be exploited, post project, through licensing or company spin out. We have a successful track record of two spin-out companies based on IP resulting from research undertaken in our group (including Orthomimetics (sold to Tigenix) and ApaTech (sold to Baxter)). We therefore realise the importance of creating a balance between undertaking sound, underpinning science published in the open literature and seeking potential impact from commercialisation. Our Advisory Team, including Dr Paul Mantle, a Departmental EPSRC funded Knowledge Transfer Facilitator, will offer guidance on clinical issues, regulatory matters, IP and potential for licensing and spin out. To take the Toolkit to a broader audience in an accessible form, we will explore links with Granta Design (see letter of support).

Increasing effectiveness of public services
The research has the potential to increase the effectiveness of the NHS in terms of improved patient outcomes, reduced care costs and enhanced cost effectiveness. We recognise that in order to drive market adoption the product would need to be recommended by NICE. With the advice of our Advisory Team we plan to ensure that data is generated the requirements of NICE approval in mind.

Public Engagement
We plan a broad programme of public engagement as outlined in our Pathways to Impact document. By highlighting the work of the grant, we plan to inspire and engage with the next generation of Materials Scientists and Tissue Engineers, and promote to the wider public the health and commercial benefits of the work.

Publications

10 25 50
 
Description Key findings

• Fabrication parameters for controlled 3D scaffold architecture.
• Discovery of crosslinking parameters to control cell behaviour.
• Elucidation of biomolecular compositions to promote specific cell responses.
• Coupling of biologically active peptide sequences to 3D scaffolds.
• Fabrication of heterogeneous gradients of architectural features and biological activity.
• Development of a Toolkit to design 3D scaffolds and to predict scaffold attributes based on the fabrication parameters.

Summary of outcomes

This joint fellowship allowed us to provide advancement in knowledge in the area of scaffold development. We have provided a step-change in understanding of the impact and control of key parameters bridging biochemistry and materials science. We have:
(1) Developed a scaffold design Toolkit for the tissue engineering community. The Toolkit is based on the underpinning knowledge and understanding, provided by systematic studies on the effects of physical, chemical and biochemical properties of scaffold materials.

(2) Developed strategies to reproducibly manufacture and control complex porous architectures to match a given tissue structure. We have also developed biomacromolecule compositions to replicate the cell niche and drive desirable cell responses.

(3) Developed biochemically modified surfaces which address cell selectivity to attract and retain the appropriate cell types for a given tissue engineering application.

(4) Identified the key barriers to success for three example demonstrator applications and we demonstrated how the Toolkit can be applied to address these specific issues.

(5) Developed significant know-how for three chosen demonstrator applications, namely a cardiac patch, a neural guide and a dermal graft. We also have a patent in the area of collagen membrane production.

(6) Throughout the experimental work packages, data were recorded and managed to provide the fundamental information required for the Toolkit. This was demonstrated to be useable in either a "bottom up" or a "top down" or approach. The former allows the selection of production parameters and biochemical surface treatments for a given clinical application. The latter approach allowed identification of the most appropriate clinical application for scaffolds with given properties. The Toolkit can be used for other types of scaffolds (e.g. those based on synthetic materials and other processing routes). We have provided a user-friendly interface for the software that we have developed and this is now available to the UK Tissue Engineering Community and was highlighted in a talk at the World Biomaterials Congress in December 2020.
Exploitation Route The Toolkit provides a mechanism by which other researchers can benefit from the research results and data that we have generated, in designing scaffolds for a range of tissue engineering and modelling beyond the scope of this work. Our publications and conference papers have provided information to the field that will enable significant advances in the production of bioactive and structurally relevant tissue models.
Sectors Healthcare

Manufacturing

including Industrial Biotechology

URL https://www.ccmm.msm.cam.ac.uk/Resources/Wiki
 
Description We formed a spin-out company from aspects of the work undertaken. We sought funding from a variety of sources and developed a business plan. However, the company is currently dormant.
First Year Of Impact 2021
Sector Healthcare
Impact Types Societal

 
Description 3DBIONET: AN INTEGRATED TECHNOLOGICAL PLATFORM FOR 3D MICRO-TISSUES
Amount £0 (GBP)
Organisation University of Liverpool 
Sector Academic/University
Country United Kingdom
Start 01/2020 
End 09/2020
 
Title CCMM Collagen Wiki 
Description CMM Wiki is the Cambridge Centre of Medical Materials' in-house tool containing background and theoretical information, as well as the experimental protocols and characterisation tools utilised within the group. CCMMwiki is collaboratively managed and edited, and currently only available internally to CCMM members. Dr Malavika Nair and Dr David Barrett constructed the CCMM Wiki and developed CCMMdb, a website allowing users to store data, plot all uploaded data together, and use the machine learning model trained on the uploaded data in order to predict structural and mechanical attributes of collagen scaffolds. 
Type Of Material Improvements to research infrastructure 
Year Produced 2020 
Provided To Others? No  
Impact The aim of CCMMwiki is to enable group members to share expertise and learn new methods rapidly, particularly within the context of tissue engineering scaffolds and biomaterials research. CCMMwiki also aims to help new members get up to speed with the research themes of the group. 
URL https://www.ccmm.msm.cam.ac.uk/Resources/Wiki
 
Title Cellular response to collagen-elastin composite materials 
Description Data set used to generate the figures in the Acta Biomaterialia paper titled 'Cellular response to collagen-elastin composite materials' Each figure and supplementary figure has a separate tab in the excel spread sheet containing all of the data used to generate that specific figure. Absorbance data were obtained on a SPECTROstar Nano plate reader (BMG labtech). SEM images were obtained on a Camscan MX 2600 FEGSEM. Light microscopy images were obtained on a Zeiss Observer Z1 fluorescent microscope This work was undertaken within the following research projects: 1) ERC Advanced Grant 320598 3D-E 2) EPSRC fellowship EP/N019938/1 3) British Heart Foundation Special Project SP/15/7/31561 4) Peoples Programme of the EU 7th Framework Programme (RAE no: PIIF-GA 2013-624904). 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
 
Title Data supporting "Collagen scaffolds functionalized with triple-helical peptides support 3D HUVEC culture" 
Description  
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/305680
 
Title Research Data supporting "Characterizing collagen scaffold compliance with native myocardial strains using an ex-vivo cardiac model: the physio-mechanical influence of scaffold architecture and attachment method" 
Description Description of Data for Characterizing Scaffold Compliance to Native Myocardial Strains This zip folder contains the raw data used in the publication 'Characterizing collagen scaffold compliance with native myocardial strains using an ex-vivo cardiac model: the physio- mechanical influence of scaffold architecture and attachment method.' Alignment and pore size data were measured using X-ray micro-computed tomography (µCT) images (Skyscan 1172). µCT images were taken of each scaffold with a voltage of 25 kV, current of 138 mA, and a pixel size of 5.46 µm. Reconstructions of mCT images were performed with NRecon software by Skyscan and analysed in ImageJ. Results for scaffold alignment (.txt files) and scaffold pore size (.txt files) are included in the zip file. Video samples of each conditions (aligned suture, aligned glue, isotropic suture, isotropic glue) were recorded with a GoPro Hero 5 camera at 30 fps. Video files (.mp4 files) ) are also included in the zip file. 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/365550
 
Title Research Data supporting "The influence of thermal processing parameters on pore size and lamellar alignment in anisotropic ice-templated collagen scaffolds" 
Description This zip folder contains the raw data used in the publication 'The influence of thermal processing parameters on pore size and lamellar alignment in anisotropic ice-templated collagen scaffolds.' Temperature data were collected at 4-second intervals (Omega RDXL6SD-USB data logger) via k-type thermocouples placed at a height of 0 mm (bottom) and 26 mm (top) in the mould. Temperature data (.xlsx files) are included in this zip file. The freezing times for collagen slurry (1 w.t.%; 9 ml) or deionized (D.I.) water (9 ml) were recorded. Samples were frozen with a cold finger which was stabilized at -60 °C prior to mould introduction and the temperature was held at -60 °C until frozen. The time from mould introduction to complete solidification, termed, "freezing time", was recorded. Freezing times for both conditions (.xlsx file) are included in this zip file. Time lapse image sequences of each protocol condition were recorded with a GoPro Hero 5 at 10 second intervals. The freezing progression binarized with ImageJ software. Binarized time lapse image stacks (.tif files) are included in this zip file. Alignment and pore size data were measured using X-ray micro-computed tomography (µCT) images (Skyscan 1172). µCT images were taken of each scaffold with a voltage of 25 kV, current of 138 mA, and a pixel size of 5.46 µm. Reconstructions of mCT images were performed with NRecon software by Skyscan and analysed in ImageJ. Results for scaffold alignment (.txt files) and scaffold pore size (.txt files) are included in the zip file. 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/366439
 
Title Research data support the article "Controlling the architecture of freeze-dried collagen scaffolds with ultrasound-induced nucleation" 
Description The deposited file "sample raw data.xlsx" includes measurements of nucleation temperature and time at equilibrium of freezing collagen slurries, and structural parameters of scaffolds (average pore size, degree of anisotropy and percolation diameter). These raw data are organised into "plot data.xlsx" and used to plot Figure 7-11 in the manuscript. Micro-CT and SEM images of scaffolds at vertical and horizontal cross-sections are included. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/361574
 
Title Research data supporting "Avoiding artefacts in MicroCT imaging of Collagen Scaffolds: Effect of phosphotungstic acid (PTA)-staining and crosslink density" 
Description Collagen scaffolds were produced by a freeze-drying (lyophilization) method and chemically crosslinked using EDC/NHS at varying degrees (0%-100%). A contrast agent, phosphotungstic acid (PTA) was used to visualise fully hydrated collagen scaffolds in a physiologically relevant environment. The fully hydrated and stained samples were scanned using a µ-CT SkyScan 1172 (Bruker, Kontich, Belgium) at pixel size of 5 µm and their pore sizes were analysed using the CTAn software (Bruker). The Microsoft Excel file called "uCT analysis results_Mean pore size and Volume shrinkage" contains the raw measurements of mean pore sizes and diameter of each collagen scaffold after various immersion treatments. This data was used to produce a part of Figure 2 and Figure 3. Furthermore, this file contains raw measurements of the volumes of 0%-XL scaffolds before and after immersion treatments. The average volume shrinkage in percentage was evaluated for each scaffold and the values were used to produce a part of Figure 3c and Figures 5a-g. The other Microsoft Excel file called "uCT analysis results_Pore size distribution" contains the raw data after 3D analysis in the CTAn software for each collagen scaffold. This data was used to produce a part of Figure 2 and Figure 3. Please see the main manuscript for more details, if needed. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/324380
 
Title Research data supporting "Complex Architectural Control of Ice-Templated Collagen Scaffolds Using a Predictive Model" 
Description The data set includes data for anisotropic ice templated collagen scaffold production including temperature and strut orientation data. Data was collected via uCT imaging of ice templated collagen scaffolds. Data was also collected via time dependent thermocouple readings and compression testing. The data set also includes simulation results from a 3D diffusion model of water solidification designed to mimic the experimental set up for ice templating. Data was exported from comsol. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/341917
 
Title Research data supporting "Engineering vasculature: Architectural effects on microcapillary-like structure self-assembly" 
Description Maximum intensity projections of confocal images used to quantify microcapillary-like structure directionality and containment (DOA and DOC). Values used and statistical analysis summary is included as well as a sample full image stack. Any further data including raw images available upon request. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/284724
 
Title Research data supporting "Extracellular macrostructure anisotropy improves cardiac tissue-like construct function and phenotypic cellular maturation" 
Description Regenerative cardiac tissue is a promising therapeutic option for myocardial repair after injury, however, poor electrical and contractile function has limited translational utility. Emerging research suggests that scaffolds that recapitulate the structure of the native myocardium improve physiological function. Engineered cardiac constructs with anisotropic extracellular architecture demonstrate improved tissue contractility, signaling synchronicity, and cellular organization when compared to constructs with reduced architectural order. The complexity of scaffold fabrication, however, limits isolated variation of individual structural and mechanical characteristics. Thus, the isolated impact of scaffold macroarchitecture on tissue function is poorly understood. Here, we produce isotropic and aligned collagen scaffolds seeded with embryonic stem cell derived cardiomyocytes (hESC-CM) while conserving all confounding physio-mechanical features to independently assess the effects of macroarchitecture on tissue function. We quantified spatiotemporal tissue function through calcium signaling and contractile strain. We further examined intercellular organization and intracellular development. Aligned tissue constructs facilitated improved signaling synchronicity and directional contractility as well as dictated uniform cellular alignment. Cells on aligned constructs also displayed phenotypic and genetic markers of increased maturity. Our results isolate the influence of scaffold macrostructure on tissue function and inform the design of optimized cardiac tissue for regenerative and model medical systems. This zip folder contains bright-field (.tif files) for each construct morphology (aligned and isotropic). Bright-field videos were recorded on an Axiovert inverted microscope (Zeiss) using a Sony LEGRIA camera and the videos were converted into image stacks. Each image is of the circular surface of the construct. The zip folder also contains calcium cycling videos (.mp4 files) for each construct morphology. Videos were recorded on an Axiovert inverted microscope (Zeiss) using a Sony LEGRIA camera. Calcium cycling was observed using Fluo-4 AM. Each video is of the circular surface of the construct without stimulation. Microsoft Excel files of paced calcium dynamics are also included under the heading paced calcium cycling. Pacing occurred at frequencies of 1 and 1.5 Hz using c-PACE EM pace (IONOPTIX). Immunocytochemistry results are included as Microsoft Excel files for cell orientation (determined by phalloidin staining orientation), cell viability (determined by PrestoBlue Cell Viability Reagent), and sarcomere characteristic results. Micrographs were obtained using an SP-5 confocal microscope (LEICA) and analyzed using ImageJ as described in the methods section of the corresponding publication. Each of these files contains data for each construct morphology. The zip folder also contains gap junction results (.txt files) determined by connexin-43 staining for each construct morphology. Microsoft Excel files for qPCR results for phenotypic gene expression are also included for each construct morphology. X-ray micro-computed tomography (µCT) images (Skyscan 1172) were taken of each scaffold with a voltage of 25 kV, current of 138 mA, and a pixel size of 5.46 mm. Reconstructions of mCT images were performed with NRecon software by Skyscan and analysed in ImageJ. Results for scaffold alignment (.txt files) and scaffold pore size (.txt files) are also included in the zip file. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact Academic impact as described in the paper. 
URL https://www.repository.cam.ac.uk/handle/1810/357335
 
Title Research data supporting "Feature importance in multi-dimensional tissue-engineering datasets: Random forest assisted optimisation of experimental variables for collagen scaffolds" 
Description Excel file containing raw structural and circular dichroism data supporting the paper 'Feature importance in multi-dimensional tissue-engineering datasets: Random forest assisted optimisation of experimental variables for collagen scaffolds'. The excel file contains two sheets. The first sheet contains the structural data (pore size, percolation diameter and median interconnection diameter of each of the nine individual measurements made across each condition). The second sheet contains the raw circular dichroism data including the backgrounds for each solvent. The codes used in the second sheet are consistent with the codes found in the paper: A-X = undialysed collagen in acetic acid A-D = dialysed collagen in acetic acid A-N = dialysed collagen in acetic acid and NaCl H-X = undialysed collagen in hydrochloric acid H-D = dialysed collagen in hydrochloric acid H-N = dialysed collagen in hydrochloric acid and NaCl W-X = undialysed collagen in water W-D = dialysed collagen in water W-N = dialysed collagen in water and NaCl 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/328167
 
Title Research data supporting "Generation of a three-dimensional collagen scaffold-based model of the human endometrium" 
Description The Excel file contains the following information on separate sheets: (1) the volume percent of pore sizes for each scaffold condition, (2) average scaffold pore sizes and standard deviations, and (3) scaffold percolation diameters. These Micro-CT data were collected using the three-dimensional analysis function and the shrink wrap feature on CTAn software, included in the Skyscan package. For percolation diameter calculations, all values were non-negative with R2 > 0.8. The Excel file also includes the decidual stromal cell densities within (4) the top 100 ?m of the scaffold surfaces for each scaffold condition and (5) a cross-section of the scaffold perpendicular to the scaffold surfaces. The number of cells on the scaffold surfaces was determined by nuclear stains counted by Fiji's automatic particle analyzer and the TrackMate plugin. Four images parallel to the scaffold surfaces with dimensions of 1.417 mm x 1.417 mm and a thickness of 100 ?m from the scaffold surface were captured for each scaffold and averaged together. The location of cells within the scaffolds was determined from the coordinates of nuclear stains using the Fiji plugin TrackMate for confocal images taken perpendicularly to the scaffold surfaces. Sheet (6) of the Excel file contains the raw measurements for the sizes of the organoid fragments immediately after fragmentation, as measured on Fiji using a light microscope image. See the main manuscript for more details. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/300655
 
Title Research data supporting "Impact of UV- and carbodiimide-based crosslinking on the integrin-binding properties of collagen-based materials" 
Description Data set used to generate the figures in the Acta Biomaterialia paper titled 'Impact of UV- and carbodiimide-based crosslinking on the integrin-binding properties of collagen-based materials'. Each figure and supplementary figure has a separate tab in the excel spread sheet containing all of the data used to generate that specific figure. Absorbance data were obtained on a Fluostar Optima plate reader. ATR FTIR data were obtained on a Bruker Tensor 27 FTIR. Phase contrast images were obtained on a LEICA DMI6000CS phase contrast microscope fitted with a LEICA DFC340FX camera. This work was undertaken within the following research projects: 1) EPSRC Fellowship EP/N019938/1 2) ERC Advanced Grant 320598 3D-E 3) British Heart Foundation Special Project SP/15/7/31561 4) Peoples Programme of the EU 7th Framework Programme [RAE no: PIIF-GA-2013-624904]. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
 
Title Research data supporting "Mimicking transmural helical cardiomyofibre orientation using Bouligand-like pore structures in ice-templated collagen scaffolds" 
Description This data set contains experimental and simulation data for the manuscript. This includes coordinates of simulated ice freezing front and pore orientation distribution by µCT analysis. Both the raw data points and Python scripts for data analysis are provided. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/360852
 
Title Research data supporting "Optimising collagen scaffold architecture for enhanced periodontal ligament fibroblast migration" 
Description The following data files are provided: • I2 & A2: These are .tif files containing binarised Micro-CT image stacks for scaffolds I2 and A2 respectively. The image stack is 550 pixels across in all dimensions, where 1 pixel = 3.74 µm. NB: Corresponding .tif files for scaffolds I1 and A1 are available as supporting data at https://www.repository.cam.ac.uk/handle/1810/252372. • Real-time videos: A .zip file containing the movies of single cell migration in each scaffold, from which cell velocity was measured. Files for scaffolds A1 and A2 are labelled as "isotropic" or "anisotropic" according to whether the image plane contains long range pore wall alignment. • Invasion data: A .zip file containing the fluorescent and corresponding bright field images of each scaffold cross-section at day 3 and day 7 after seeding. • Collated data: An excel file containing the measurements of pore size and percolation diameter taken from the Micro-CT files listed above, cell velocities measured from the movies listed above, and cell position/orientation index measured from the fluorescent/bright field images listed above. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/264762
 
Title Research data supporting "Poly-L-lactic acid nanotubes as soft piezoelectric interfaces for biology: controlling cell attachment via polymer crystallinity" 
Description Fig 3a) LDH attachment assay. Fig 4) QNM, KPFM and PFM data taken using Bruker Multimode 8 atomic force microscope with a MESP-RC-V2 probe (Bruker). Fig S7) QNM data. Fig S9) KPFM data. Fig S10) LDH attachment assay. Fig S11) QNM data. Fig S12) KPFM data. Fig S13) PFM data. Fig S14) QNM data. Fig S15b) XRD data. Fig S15c) LDH attachment assay. See the file Readme.txt for detailed information. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/303986
 
Title Research data supporting "Predictive control of pore architecture in ice-templated scaffolds via heat flux density modulation" 
Description Quantitative and visual data of the porous structure of ice-templated collagen scaffolds produced under different conditions characterised by X-ray microtomography. Quantitative data of the pore size, degree of anisotropy and percolation diameter were acquired using CTAn (Bruker). Visual data were aquired using NRecon (Bruker) and CTVox (Bruker). 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/373121
 
Title Research data supporting ''Collagen Film Activation with Nanoscale IKVAV-Capped Dendrimers for Selective Neural Cell Response'' 
Description Data set used to generate the figures in the Nanomaterials paper titled 'Collagen Film Activation with Nanoscale IKVAV-Capped Dendrimers for Selective Neural Cell Response'. Absorbance data were obtained on a Fluostar Optima plate reader. Fluorescence images were obtained on a Zeiss Axio Observer Z1 microscope fitted with a AxioCam 530 camera. This work was undertaken within the following research projects: 1) EPSRC Fellowship EP/N019938/1 2) EPSRC Studentship studentship 1791774 3) 3D BioNet funding 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/322171
 
Title Research data supporting 'MicroCT analysis of connectivity in porous structures: optimising data acquisition and analytical methods in the context of tissue-engineering' 
Description  
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/303941
 
Title Research data supporting 'Structurally graduated collagen scaffolds applied to the ex vivo generation of platelets from human pluripotent stem cell-derived megakaryocytes: enhancing production and purity' 
Description Platelet transfusions are a key treatment option for a range of life threatening conditions including cancer, chemotherapy and surgery. Efficient ex vivo systems to generate donor independent platelets in clinically relevant numbers could provide a useful substitute. Large quantities of megakaryocytes (MKs) can be produced from human pluripotent stem cells, but in 2D culture the ratio of platelets harvested from MK cells has been limited and restricts production rate. The development of biomaterial cell supports that replicate vital hematopoietic micro-environment cues are one strategy that may increase in vitro platelet production rates from iPS derived Megakaryocyte cells. In this paper, we present the results obtained generating, simulating and using a novel structurally-graded collagen scaffold within a flow bioreactor system seeded with programmed stem cells. Theoretical analysis of porosity using micro-computed tomography analysis and synthetic micro-particle filtration provided a predictive tool to tailor cell distribution throughout the material. When used with MK programmed stem cells the graded scaffolds influenced cell location while maintaining the ability to continuously release metabolically active CD41+ CD42+ functional platelets. This scaffold design and novel fabrication technique offers a significant advance in understanding the influence of scaffold architectures on cell seeding, retention and platelet production. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/332861
 
Title Research data supporting Adjusting the Physico-Chemical Properties of Collagen Sca?olds to Accommodate Primary Osteoblasts and Endothelial Cells 
Description Excel spread sheet of data used to construct graphs in 'Adjusting the Physico-Chemical Properties of Collagen Sca?olds to Accommodate Primary Osteoblasts and Endothelial Cells' that has been published in Regenerative Biomaterials 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/350342
 
Title Research data supporting In-situ ESEM imaging of the vapor-pressure-dependent sublimation-induced morphology of ice 
Description The following data files are provided: Python file containing the raw data for wavelengths and velocities measured at each pressure and Zip file containing all ESEM images taken at each pressure used for publication. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Title Research data supporting Self-assembly of collagen bundles and enhanced piezoelectricity induced by chemical crosslinking 
Description Raw QNM, KPFM and KPFM data files supporting Self-assembly of collagen bundles and enhanced piezoelectricity induced by chemical crosslinking. KPFM and PFM files of insoluble and soluble collagen, as well as crosslinked collagen on ITO coated glass. QNM files on ITO substrates on thin borosilicate glass. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
 
Title Research data supporting The Effects of Despeckling Filters on Pore Size Measurements in Collagen Scaffold Micro-CT Data 
Description Three zip folders, each containing micro-CT scans (.tif files) of ice templated collagen scaffolds. The three scaffolds were produced from 1 wt.% collagen slurry, using a freeze casting protocol designed to produce mean pore sizes of 100-150 µm (see main manuscript for the freezing protocol). The scaffolds produced were cylindrical with a diameter of 15 mm and height between 7-11 mm. Micro-CT was used to analyse the scaffolds. A pixel size of 4 µm was used. The raw micro-CT scans were reconstructed, then cropped to remove any air bubble artefacts, to produce three cubic regions of interest measuring 6x6x6 mm. These cubes were thresholded using the two dimensional Otsu method. Each pixel in the cross sectional .tif images represents 4 x 4 µm. These datasets were then further processed and analysed as described in the main manuscript. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/332959
 
Title Research data supporting Tunable bioactivity and mechanics of collagen-based tissue engineering constructs: A comparison of EDC-NHS, genipin and TG2 crosslinkers 
Description  
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/305348
 
Title Research data supporting the article 'Collagen-Fibrinogen Lyophilised Scaffolds for Soft Tissue Regeneration' 
Description Data originating from a broad spectrum of work considering the lyophilisation of collagen based scaffolds for tissue engineering applications. A paper focusing on the feasiblity of the production of collagen-fibrinogen scaffolds and an investigation of the specific biological effect of the fibrinogen additions. The raw data is included for the quantitative pore analysis using micro-CT, cell adhesion and cell spreading. For access to any of the images from which these data were collected please contact the author. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Supporting data for: "The 3D Printing of Freestanding PLLA Thin Layers and Improving First Layer Consistency through the Introduction of Sacrificial PVA" 
Description The dataset contains measurements of thicknesses of printed layers of PVA and PLLA used to produce a series of figures for the associated publication. The analysis was motivated by improving the consistency of the first layers deposited in fused deposition modelling 3D prints, and to provide a means to produce thin (~25 microns thick) free-standing layers of PLLA. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Academic impact as described in the associated paper. 
URL https://www.repository.cam.ac.uk/handle/1810/326408
 
Description Machine learning Models 
Organisation University of Oxford
Country United Kingdom 
Sector Academic/University 
PI Contribution Dr Malavika Nair collaborated with PhD at Alan Turing Institute and Oxford University.
Collaborator Contribution Progressed development of Machine learning models.
Impact Too early to list outputs.
Start Year 2020
 
Description Prosperity Partnership: scaffolds for total knee replacement 
Organisation Geistlich
Country Switzerland 
Sector Private 
PI Contribution University of Leeds, Invibio Limited, Geistlich Pharma AG
Collaborator Contribution We have successfully prepared a Prosperity Partnership application due to start July 2023
Impact Multi-disciplinary outputs include Mechanical Engineering and surgical implants
Start Year 2022
 
Description Prosperity Partnership: scaffolds for total knee replacement 
Organisation Invibio
Country United Kingdom 
Sector Private 
PI Contribution University of Leeds, Invibio Limited, Geistlich Pharma AG
Collaborator Contribution We have successfully prepared a Prosperity Partnership application due to start July 2023
Impact Multi-disciplinary outputs include Mechanical Engineering and surgical implants
Start Year 2022
 
Description Prosperity Partnership: scaffolds for total knee replacement 
Organisation University of Leeds
Department School of Mechanical Engineering Leeds
Country United Kingdom 
Sector Academic/University 
PI Contribution University of Leeds, Invibio Limited, Geistlich Pharma AG
Collaborator Contribution We have successfully prepared a Prosperity Partnership application due to start July 2023
Impact Multi-disciplinary outputs include Mechanical Engineering and surgical implants
Start Year 2022
 
Description Scaffolds for lung cells 
Organisation University of Cambridge
Department Department of Engineering
Country United Kingdom 
Sector Academic/University 
PI Contribution We have set up a new collaboration with Dr. Emma Rawlins (Senior Group Leader and MRC non-clinical Senior Research Fellow, Gurdon Institute), who is a lung cell specialist and have explored the use of our scaffolds to recapitulate the lung tissue environment to create mini-tissues.
Collaborator Contribution Dr. Rawlins has supplied primary lung cells to our group.
Impact We have submitted a BBSRC grant application to follow on this work.
Start Year 2020
 
Title COLLAGEN BIOMATERIALS AND METHODS FOR MANUFACTURING COLLAGEN BIOMATERIALS 
Description This invention relates to collagen biomaterials and methods for manufacturing collagen biomaterials. Method disclosed herein include steps of providing a suspension of insoluble collagen fibres, providing a layer deposition interface and applying an electric field across the suspension to cause electrophoretic deposition of the insoluble collagen fibres at the layer deposition interface. Biomaterials disclosed herein include a layer comprising an array of fibres of collagen, and a layered composite material comprising at least first and second fibrous layers each comprising an array of fibres of collagen, and a shape adapting layer sandwiched between the first and second fibrous layers. Biomaterials as described herein may be useful in a range of tissue engineering and other applications. 
IP Reference WO2019219916 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact We have formed a spin-out company CamRegen and are currently working towards pre-seed and seed funding rounds.
 
Company Name CamRegen 
Description CamRegen develops collagen-based medical devices. 
Year Established 2021 
Impact The spin out has been established recently.
 
Description 4th International Conference on Microstructures and Properties of Materials, China 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax presented a paper at the conference, School of Materials Science and Engineering of Zhejiang University
Year(s) Of Engagement Activity 2019
URL https://mse.zju.edu.cn/enmse/2019/0527/c35021a1453119/page.htm
 
Description Cambridge Advanced Materials Network (CAMatNet) Collagen Meeting, Department of Materials Science University of Cambridge 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax presented at the conference on "Control of cell response through collagen crosslinking"
Year(s) Of Engagement Activity 2017
 
Description Dr Daniel Bax - 30th Annual Conference of the European Society for Biomaterials ESB 9-13 September 2019 Dresden, Germany 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax presented at the ESB Conference.
Year(s) Of Engagement Activity 2019
 
Description Dr Daniel Bax - World Biomaterials Congress Presentation 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax's presentation was selected for the World Biomaterials Congress via a competitive application process. The Congress is held every 4 years and is probably the most important international event in our field.
Year(s) Of Engagement Activity 2020
URL https://wbc2020.org/
 
Description Dr Daniel Bax - 28th Annual Conference of the European Society for Biomaterials, September 4 - 8, 2017, Athens, Greece 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax presented at the Conference.
Year(s) Of Engagement Activity 2017
 
Description Dr Daniel Bax attended 3DBioNet Workshop, London 2020 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Dr Daniel Bax contributed to the Workshop for the 3DbioNet project.
Year(s) Of Engagement Activity 2020
URL https://3dbionet.org/
 
Description Dr Daniel Bax attended Bioremia Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Bioremia ITN brings together an interdisciplinary team focussed on advanced biofilm-resistant metallic materials for hard tissue implants. Cambridge University is one of the 6 partners in this ITN. Dr Daniel Bax participated in the Bioremia online workshop to lend his expertise.
Year(s) Of Engagement Activity 2020
URL https://www.bioremia.eu/
 
Description Dr Kyung-Ah Kwon - The 30th Annual Conference of the European Society for Biomaterials 9-13September 2019 Dresden, Germany 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Kwon gave a poster presentation on "Three-dimensional visualisation of internal architecture of collagen scaffolds in aqueous medium using micro-CT
Year(s) Of Engagement Activity 2019
 
Description Lecture by Dr Daniel Bax 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Part of Cambridge Science Festival - a lecture.
Year(s) Of Engagement Activity 2017
 
Description Lecture by Dr Malavika Nair 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Dr Malavika Nair gave a Biomaterials online lecture for Headstart courses for A level students.
Year(s) Of Engagement Activity 2020
URL http://www.headstartcourses.org.uk/
 
Description Physics at Work 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Dr Malavika Nair gave a presentation for Physics at Work aims to show the variety of careers to which study in Physics can lead and the range of practical problems that physics can be used to solve.
Year(s) Of Engagement Activity 2020
URL https://outreach.phy.cam.ac.uk/programme/physicsatwork
 
Description Presentation by Dr Daniel Bax 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Dr Daniel Bax gave a presentation to University group. Postdoctoral Masterclass.
Year(s) Of Engagement Activity 2017
 
Description World Biomaterials Congress 2020 Presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr David Barrett presented a paper at World Biomaterials Congress 2020
Year(s) Of Engagement Activity 2020
URL https://wbc2020.org/
 
Description World Biomaterials Congress 2020 Presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dr Malavika Nair presented at the World Biomaterials Congress 2020
Year(s) Of Engagement Activity 2020
URL https://wbc2020.org/
 
Description World Biomaterials Congress Special Symposium 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A Special Symposium entitled "Collagen, Elastin and Peptide-based Scaffolds for Regenerative Medicine" was selected for the World Biomaterials Congress via a competitive application process. The Congress is held every four years and is probably the most important international event in our field.
Year(s) Of Engagement Activity 2020
URL https://wbc2020.org/