Machine Learning for Patient-Specific, Predictive Healthcare Technologies via Intelligent Electronic Health Records

Lead Research Organisation: University of Oxford
Department Name: Engineering Science

Abstract

Healthcare systems world-wide are struggling to cope with the demands of ever-increasing populations in the 21st-century, where the effects of increased life expectancy and the demands of modern lifestyles have created an unsustainable social and financial burden. However, healthcare is also entering a new, exciting phase that promises the change required to meet these challenges: ever-increasing quantities of complex data concerning all aspects of healthcare are being stored, throughout the life of a patient. These include electronic health records (EHRs) now active in many hospitals, and large volumes of data being collected by patient-worn sensors.

The resulting rapid growth in the amount of data that is stored far outpaces the capability of clinical experts to cope. There is huge potential for using advances in computer science to use these huge datasets. This promises to improve healthcare outcomes significantly by allowing the development of new technologies for healthcare using the data - this is an area that promises to develop into a major new field in medicine. Making sense of the complex data is one of the key challenges for exploiting these massive datasets.

This programme aims to establish a new centre focussed on developing the next generation of predictive healthcare technologies, exploiting the EHR using new methods in computer science. We describe a number of healthcare themes which demonstrate the potential to improve patient outcomes. This will be achieved in collaboration with a consortium of leading clinicians and healthcare companies. The primary aim is to develop the "Intelligent EHR", which will have applications in creating "early warning systems" to predict patient problems (such as heart failure), and to help doctors know which drug or treatment would best be used for each individual patient - by interpreting the vast quantities of data available in the EHR.

Planned Impact

The proposed programme has the potential for very significant impact for patients in the hospital or in the home, by optimising patient management and improving outcomes. Patients who are deteriorating will be identified early, which will allow preventative action to be taken, avoiding serious escalation (such as unplanned admission to an ICU), and which will reduce the incidence of preventable morbidity, cardiac arrests, and death. Those hospital patients recovering faster than expected, and who are deemed to be sufficiently stable, can be discharged home earlier. Patient-specific treatments will be enabled in both themes of the proposed work, improving patient outcomes by improving the efficacy of care provided. The translation of such systems into the home environment will provide benefit to patients with long-term conditions, such as chronic obstructive pulmonary disease (COPD) and heart failure - this will be achieved via predictive systems that allow clinicians to track patient condition without the false-alarm rate associated with existing systems, and which prevents existing systems providing benefit to existing patients.

The NHS as an organisation will benefit from the research because improved patient outcomes are associated with lower healthcare costs, as a result of shorter stays in hospital and fewer unplanned admission to (expensive) higher levels of care. Additionally, patients will be stratified according to risk of severity / deterioration, allowing improved use of clinical staffing resources. Clinicians will benefit by being able to interpret, for the first time, the very large and heterogeneous datasets that are available for their patients - enabled by robust, probabilistic tools created during the programme.

Companies in the commercial private sector will benefit from the research, where existing links with SMEs (university spin-outs) and large IT companies (Microsoft and Philips) will allow rapid implementation of the techniques developed during the programme. Such companies have an interest in "intelligent healthcare" algorithms that can be integrated into existing healthcare IT products, which will add significant value and market differentiation. Additionally, the rapidly-growing market for wearable devices is currently focused only on consumers - the proposed centre will extend this market to healthcare technologies, by exploiting the opportunities for large-scale innovation and clinical validation that exist in the programme. The UK economy will benefit by the likely creation of new spin-out activity based around the activity of the proposed centre.

The scientific community, and the UK research base in particular, will benefit from developing capacity in an emerging field of global importance, and where the proposed centre will train the next generation of researchers in computational health informatics - the use of machine learning for healthcare technologies. The methodology developed within the proposed programme will be of translational benefit to other scientific disciplines, including other computational and mathematical sciences. Results from the proposed work will feed into the Alan Turing Institute, where researchers involved across the UK will benefit from the development of large-scale methodologies for data science.

The public will benefit via public-engagement activities run in collaboration with the Institution for Engineering & Technology (the world's largest multidisciplinary engineering professional institution), the George Institute for Global Health (which holds public-engagement conferences at its bases in Oxford, Sydney, Beijing, and New Delhi), the Royal Academy of Engineering (which supports Clifton's work via a Research Fellowship), and the NIHR Oxford Biomedical Research Centre (which holds regular public outreach events).

Publications

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Birrenkott DA (2018) A Robust Fusion Model for Estimating Respiratory Rate From Photoplethysmography and Electrocardiography. in IEEE transactions on bio-medical engineering

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Birrenkott DA (2016) Robust estimation of respiratory rate via ECG- and PPG-derived respiratory quality indices. in Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

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Charlton PH (2018) Breathing Rate Estimation From the Electrocardiogram and Photoplethysmogram: A Review. in IEEE reviews in biomedical engineering

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Clifton L (2019) Comparing different ways of calculating sample size for two independent means: A worked example. in Contemporary clinical trials communications

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Clifton L (2019) How to maintain the maximal level of blinding in randomisation for a placebo-controlled drug trial. in Contemporary clinical trials communications

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Colopy GW (2016) Bayesian Gaussian processes for identifying the deteriorating patient. in Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

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Colopy GW (2017) Likelihood-based artefact detection in continuously-acquired patient vital signs. in Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

 
Description We have developed robust predictive systems for forecasting patient health using time-series of patient vital signs, in a manner that exceeds the existing state-of-the-art by a substantial margin. The programme led to the award of two national senior awards, and the creation of a new Chair at the University of Oxford.
Exploitation Route Patents, open-source toolboxes.
Sectors Healthcare

 
Description We have filed a number of patents via Oxford University Innovation, with more currently in progress. As these progress through the IP pipeline, they are licensed by OUI to industry. A number of the licenses formed part of the IPO for Sensyne Health Plc., the UK's first "AI for Healthcare" company that we floated on the London AIM Stock Exchange in September, 2018. This company now employs over 100 people. Subsequent IP is in discussion for additional licensing to one of the world's largest healthcare equipment manufacturers (currently under CDA). Some of the findings supported a University spin-out (Biobeats Ltd.) to be bought by a large medical devices company (Huma) in 2020. Other findings supported the application for, and award of, the Wellcome Trust's first "Flagship Centre", which joins our Oxford lab to the Oxford University Clinical Research Unit in Vietnam. This major programme is funded for 3 years, renewable to 9 years, and offers an excellent means of building on the technology for improving healthcare in LMICs. Further findings supported the application for, and award of, an "InnoHK Centre for Cardiovascular Engineering", funded by the ITC research council of Hong Kong, for £50m (awarded and currently in legal negotiation). Finally, the findings have built the PI's track record to the point at which he has been nominated to lead a major theme in the NIHR Biomedical Research Centre at Oxford, of some £5m over 5 years and which focuses on translating the early-stage findings of this grant into clinical practice.
First Year Of Impact 2018
Sector Healthcare
Impact Types Economic

 
Description Healthcare Wearables for Independent Living
Amount £1,216,069 (GBP)
Funding ID EP/W031744/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 01/2023 
End 12/2025
 
Description Research Chair
Amount £1,586,000 (GBP)
Organisation Royal Academy of Engineering 
Sector Charity/Non Profit
Country United Kingdom
Start 05/2023 
End 04/2028
 
Description Research Professorship
Amount £1,823,387 (GBP)
Funding ID NIHR302440 
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 12/2022 
End 11/2027
 
Description Research collaboration 
Organisation GlaxoSmithKline (GSK)
Country Global 
Sector Private 
PI Contribution Jointly working on AI methods for improving healthcare and the development of medicines.
Collaborator Contribution Data, domain expertise, problem setting.
Impact Open-access publications, support for national awards.
Start Year 2021
 
Title DEEP END-TO-END CLASSIFICATION OF ELECTROCARDIOGRAM DATA 
Description There is disclosed a computer-implemented method of classifying electrocardiogram data of a patient, comprising the steps of receiving input data from each of a plurality of electrocardiogram leads, arranging the input data into a single combined image, and applying a machine-learning algorithm to the combined image to classify the electrocardiogram data. 
IP Reference WO2021014150 
Protection Patent application published
Year Protection Granted 2021
Licensed Commercial In Confidence
Impact Further development via industry.
 
Title METHOD AND APPARATUS FOR MONITORING A HUMAN OR ANIMAL SUBJECT 
Description Methods and apparatus for monitoring a human or animal subject are disclosed. In one arrangement, measurement data representing a time series of measurements on a subject is received. The measurement data is represented as a mathematical expansion comprising a plurality of expansion components and expansion coefficients. First and second partial reconstructions are performed using first and second subsets of the expansion components. First and second spectral analyses are performed on the first and second partial reconstructions to determine first and second dominant frequencies. A frequency of a periodic physiological process is derived based on either or both of the first and second dominant frequencies. 
IP Reference US2021000384 
Protection Patent application published
Year Protection Granted 2021
Licensed Yes
Impact Licensed to Sensyne Health Plc for translation into products.
 
Title METHOD AND APPARATUS FOR MONITORING A HUMAN OR ANIMAL SUBJECT 
Description Methods and apparatus for monitoring a human or animal subject are disclosed. In one arrangement, test data representing a time-series of physiological measurements performed on a subject in a measurement session is received. A mean trajectory with error bounds is fitted to the test data. A state of the subject is determined by comparing the fitted mean trajectory with error bounds to a stored model of normality. The stored model of normality comprises a library of latent mean trajectories with error bounds. Each latent mean trajectory with error bounds is derived by fitting a hierarchical probabilistic model to a respective one of a plurality of sets of historical data. Each set of historical data comprises a plurality of session data units. Each session data unit representing a time-series of physiological measurements obtained during a different measurement session. The latent mean trajectory with error bounds for the set describes an underlying function governing each of the time-series of the session data units of the set. 
IP Reference US2020395125 
Protection Patent application published
Year Protection Granted 2020
Licensed Commercial In Confidence
Impact Further development via industry.