Droplet-based Microfluidic Platform for Intracellular Ion Channel Drug Discovery

Lead Research Organisation: University of Strathclyde
Department Name: Electronic and Electrical Engineering

Abstract

Ion channels are proteins that are involved in the regulation of almost every cellular mechanism and they constitute the second largest class of pharmacological drug targets. A family of these channels are located in the inner compartments of a cell (i.e. they are intracellular) and they are typically excluded from industrial large-throughput automated screening (e.g. automated patch clamp technology) that probe ion channels only in the outer cell membrane. As such, implications arise that affect the hit discovery rate of new drugs for such proteins. This proposal aims to produce and test a new microsystem technology for drug screening of human intracellular ion channels. The system will comprise a medium-throughput microfluidic prototype relying entirely on synthetic cell membranes harbouring intracellular ion channels. Whilst developing this new technology, this study will investigate two proteins that are involved in cancer and neurodegeneration, namely CLIC1 (used for validation) and CLIC4, which currently has no known pharmacological identified drug. Drug screening will be done in collaboration with industrial partners AstraZeneca and Smartox.

Planned Impact

New technology is widening the chance of developing new pharmacological compounds and has the potential to create new jobs and have economic and societal impact on healthcare.
Economic impact: The average expenditure to develop and bring to market a new drug is estimated to be approximately $2 billion, with target identification, discovery and the development of a new chemical compound before clinical trials accounting for 30% of the total cost. Commercialization of the developed platform has potential to add considerable information over the gold standard obtained by current electrophysiological tests with automated patch-clamp technology and impact the pre-screening stages of compounds, most of which is currently provided as a service by CROs and/or CMOs. Therefore, outcomes from this project have potential to carve a unique sector in the market of drug screening instrumentation. To assess this impact and available opportunities, we have secured the participation of members from academia, healthcare technology and industry to act as an advisory board for consultancy regarding knowledge transfer and commercialisation.
Industrial impact: The developed system will be tested in collaboration with project partner AstraZeneca for the development of pharmacological assays based on combinatorial chemistry approaches. Outside the immediate benefit in identifying new active compounds for the CLIC4 channel, the potential for translating the developed procedures for other pharmacologically relevant eukaryotic ion channels present cost-saving arguments against current live-cell based, large-screening assay in the Pharmaceutical industry. In addition, the collaboration with project partner Smartox will explore a further application of the technology for use with limited resources of venom samples only available in extremely small quantities that currently elude industrial automated screening. The proposed technology has the potential to greatly impact drug discovery by identifying new efficient venom-derived drugs. Together, this double partnership will enable us to address different screening needs for both SME and the Pharmaceutical Industry.
Societal impact: Identification of new drug candidates from the developed technology will expand the panel of drugs with implications in cancer, mitochondrial dysfunction and neurodegenerative diseases. Improving the efficacy of identified drugs at preclinical level is expected to improve outcomes during clinical trials. Therefore, wide societal benefits would be in the form of new medicine and their improved efficacy. Furthermore, the applicability of the proposed technology to the other identified applications (see academic beneficiaries) and healthcare related fields could impact the screening of vaccines and environmental toxins, all of which will produce massive societal benefits.

Publications

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Zhang Y (2021) Microdroplet Operations in Polymeric Microtubes. in Analytical chemistry

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Zhang Y. (2018) A droplet-interface-bilayer platform for the characterization of intra-cellular ion channels in 22nd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2018

 
Description We have developedg novel miniatursied methodologies to study how ion channels, the main targets of majority of pharmaceutical compounds, work. Our findings so far have elucidated mechanisms of action of Annexin5, CLIC1 and CLIC4 ion channels that were previously not completely known due to a lack of bespoke tools. Final studies are still ongoing to build up statistical evidence of our findings. We have developed two new microfluidic architectures that can be interfaced with a robotic dispenser for medium throughoput drug discovery which are fully functional.
Exploitation Route Our methodolgies based on cell-free ion channel interrogation will be used to study infection mechanisms by viruses. We are curently exploring this opportunity.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Title Automated microdroplet dispensing system 
Description A micrcontroller based mechanical stage that enables multiphase fluid production and interfaced with a microfluidic system 
Type Of Material Technology assay or reagent 
Year Produced 2018 
Provided To Others? No  
Impact We are exploring possibility to generate IP and preliminary results used by Dr Yu Zhang (postdoc on grant) for submission of a personal research fellowship 
 
Title Novel microfluidic devices for parallel analysis of ion channels and rare compounds in artificial membranes 
Description We have validated new microfluidic technologies and syntehtic biology methodologies that allow the investigation of ion channel behaviour in an artificial, cell-free manner, greatly increasing the throughput of information produced with respect to our previous system. Currently, previously not characterised ion channels (intracellular chloride ion channels) and novel compounds are tested using this platform. 
Type Of Material Technology assay or reagent 
Year Produced 2017 
Provided To Others? No  
Impact These tools will enable the large scale investigation of venom derived peptide effects on intracellular ion channels, providing a two-fold impact: 1) will produce a cell-free technology that will complement existing ones based on patch-clamping techniques; 2) will produce new knowledge for the development of venom derived new drugs. 
 
Description Drug screening of CLIC ion channels in microfluidics 
Organisation University of Glasgow
Department School of Engineering Glasgow
Country United Kingdom 
Sector Academic/University 
PI Contribution Strathclyde and Glasgow are co-investigators in this EPSRC award. Strathclyde develops the microflduic technology and tests CLIC ion channels provided by Glasgow.
Collaborator Contribution Strathclyde and Glasgow are co-investigators in this EPSRC award. Strathclyde develops the microflduic technology and tests CLIC ion channels provided by Glasgow.
Impact Current award and publications from EPSRC PhD studentship (Miss Barbara Schlicht)
Start Year 2014
 
Description Provision of drug library for ion channel screening 
Organisation Apconix Ltd
Country United Kingdom 
Sector Academic/University 
PI Contribution Strathclyde will test drugs provided by ApconiX in microfluidic devices
Collaborator Contribution ApconiX provides guidance over drug testing protocols to be developed and provides in-kind access to a large panel of drug libraries
Impact na
Start Year 2015
 
Description Provision of venom peptides for CLIC ion channel screening 
Organisation Smartox Biotechnology
Country France 
Sector Private 
PI Contribution We are testing venom derived peptode from Smartox producing novel methodologies to test rare and small volume venoms
Collaborator Contribution Provision of venom derived peptides
Impact Work in progress, no outcomes yet
Start Year 2018