R-matrix suites for multielectron attosecond dynamics in atoms and molecules irradiated by arbitrarily polarised light
Lead Research Organisation:
Queen's University Belfast
Department Name: Sch of Mathematics and Physics
Abstract
In this project, we will develop new software for the accurate description of atoms and molecular systems in intense, ultra-short light fields with arbitrary polarisation. This involves generalising two world-leading suites of codes: The R-matrix with time-dependence codes (RMT) for ultra-fast atomic dynamics and the UKRmol+ suite for electron/positron scattering and photoionisation processes in molecules. By making these codes available to the wider community, in a form that can be easily used and efficiently run, we will help build the software infrastructure in the UK.
Significant development in laser technology over the last couple of decades has led to the birth of attosecond science: lasers are now available that can produce extremely short pulses (around 0.1 femtosecond or 10(-16) s in duration) to image and control the motion of electrons in atoms and molecules. This development has, for example, enabled scientists to 'see' how charge is transferred in a molecule after it is ionised, a process that has biological importance (for example, in photosynthesis).
Light can be treated as an electromagnetic wave; the direction in which the electric field oscillates defines the polarisation of the light. This polarisation, in turn, determines how the light interacts with matter. Until very recently intense, ultra-short light pulses were linearly polarised. However, it has recently become possible to generate laser pulses with different types of polarisation. New scientific research areas and new opportunities have become available via these latest technological developments. With control over the polarisation of light pulses, one can control the electron dynamics and even fine-tune it: In simple terms, using light pulses which oscillate in more than one-dimension gives an additional control parameter in experiments, and this is the underlying mechanism in so-called multidimensional spectroscopy. This field is becoming increasingly interesting, as experiments begin to probe the interface of the quantum and classical worlds.
In addition, light pulses with elliptical polarisation will enable the detailed study of electron dynamics in chiral molecules. (Chiral molecules are those that cannot be superimposed to their mirror images, like human hands). These molecules are immensely interesting: a lot of biologically important molecules, like the amino acids and sugars that are building blocks of living organisms are 'homochiral': only one variant is present in life (but never its mirror image).
New computer codes, which can handle general atomic and molecular systems in arbitrarily polarised light are needed to complement experimental advances, to assist in their theoretical interpretation and also to guide them. At present, the RMT codes can model atoms in a linearly polarised light field. Expanding them to treat the effect of arbitrarily polarised light is a substantial task: It requires lifting symmetry restrictions which have limited the size of previous calculations, and consequently a significant improvement in the codes' efficiency to account for the much larger-scale calculations will be necessary. In addition, we will massively expand the impact of the method by developing an equivalent method to treat molecules in a time-dependent fashion. The data needed to study the effect of the laser pulses on molecules will be generated by the UKRmol+ suite. This, in turn, requires the overhauling of these codes so they can produce sufficiently accurate input in an efficient way.
The computational development within this project will be strongly connected to the CCPQ community, which involves research groups across the UK developing scientific software for use in atomic and molecular physics and computational chemistry. Through CCPQ we will not only share the suites of codes, but also the expertise and software development skills gained.
Significant development in laser technology over the last couple of decades has led to the birth of attosecond science: lasers are now available that can produce extremely short pulses (around 0.1 femtosecond or 10(-16) s in duration) to image and control the motion of electrons in atoms and molecules. This development has, for example, enabled scientists to 'see' how charge is transferred in a molecule after it is ionised, a process that has biological importance (for example, in photosynthesis).
Light can be treated as an electromagnetic wave; the direction in which the electric field oscillates defines the polarisation of the light. This polarisation, in turn, determines how the light interacts with matter. Until very recently intense, ultra-short light pulses were linearly polarised. However, it has recently become possible to generate laser pulses with different types of polarisation. New scientific research areas and new opportunities have become available via these latest technological developments. With control over the polarisation of light pulses, one can control the electron dynamics and even fine-tune it: In simple terms, using light pulses which oscillate in more than one-dimension gives an additional control parameter in experiments, and this is the underlying mechanism in so-called multidimensional spectroscopy. This field is becoming increasingly interesting, as experiments begin to probe the interface of the quantum and classical worlds.
In addition, light pulses with elliptical polarisation will enable the detailed study of electron dynamics in chiral molecules. (Chiral molecules are those that cannot be superimposed to their mirror images, like human hands). These molecules are immensely interesting: a lot of biologically important molecules, like the amino acids and sugars that are building blocks of living organisms are 'homochiral': only one variant is present in life (but never its mirror image).
New computer codes, which can handle general atomic and molecular systems in arbitrarily polarised light are needed to complement experimental advances, to assist in their theoretical interpretation and also to guide them. At present, the RMT codes can model atoms in a linearly polarised light field. Expanding them to treat the effect of arbitrarily polarised light is a substantial task: It requires lifting symmetry restrictions which have limited the size of previous calculations, and consequently a significant improvement in the codes' efficiency to account for the much larger-scale calculations will be necessary. In addition, we will massively expand the impact of the method by developing an equivalent method to treat molecules in a time-dependent fashion. The data needed to study the effect of the laser pulses on molecules will be generated by the UKRmol+ suite. This, in turn, requires the overhauling of these codes so they can produce sufficiently accurate input in an efficient way.
The computational development within this project will be strongly connected to the CCPQ community, which involves research groups across the UK developing scientific software for use in atomic and molecular physics and computational chemistry. Through CCPQ we will not only share the suites of codes, but also the expertise and software development skills gained.
Planned Impact
The major impact of the project will be the provision of two software suites which will enable new computational science and support and guide experimental research exploiting state-of-the-art light technology. We will develop a community of users through tools on the CCPForge portal, where the codes will be made freely available to researchers. We will showcase the benefits and capabilities of the suites through presentation at scientific conferences and continued participation in national (CCPQ) and international training and collaboration networks. We will also provide training in the use of the suites through a dedicated training workshop.
Code developments within this project will be shared with other developers of R-matrix based software for atomic and molecular processes impacting, for example, on the diagnostics of plasmas and their contamination in nuclear fusion reactors. Better understanding of all processes occurring within a reactor will ultimately enable the development of such reactors for energy generation. The software will also be made available to researchers at STFC Daresbury Laboratory and the Irish Centre for High-End Computing for porting onto emerging compute technologies, with a view to inclusion in application benchmark suites.
The codes will impact on the study of processes involving sub-femtosecond electron dynamics, an area which has opened up with the advance of short-pulse light technology. This dynamics underpins photochemical processes of fundamental importance, including photosynthesis, vision and the function and manufacture of solar cells. The capability to treat light with arbitrary polarisation will enable better understanding of the chiral nature of asymmetric molecules. Accurate measurement techniques which probe this chirality are in demand because of the proliferation of chiral molecules in medical applications, and the potentially very dangerous use of apparently equivalent molecules of the wrong symmetry (e.g.Thalidomide).
The proposed developments will also impact on emerging laser technologies based on high harmonic generation (HHG), and on emerging measurement techniques such as multidimensional spectroscopy. These techniques rely on full spatial control over the electronic wavepackets, which can be achieved using circularly polarised or cross polarised light pulses. Our work will allow modelling of the full motion of the electron wavepacket, providing unparalleled insight into possible optimisations and applications of HHG and new measurement techniques.
The UKRmol+ suite is used worldwide to study electron and positron collisions with molecules. Developments will enable current users to tackle problems of applied interest (e.g. processes relevant to focused electron beam induced deposition and damage induced by ionisation radiation in the cell). In addition, since the new suite will enable efficient calculation of quantities required for photoionisation calculations, it will open up its use to a new community.
This suite will be taken up by Quantemol Ltd., who provide expert-system software for quantum mechanical problems of practical importance. Quantemol is currently involved with academic and industrial research in technological plasmas. Quantemol will adapt their products for use with the UKRmol+ suite, which will increase their customer base. The description of the interaction of molecules and light will furthermore allow new product development.
Building on the OU's long history of collaboration with the BBC, we will make a YouTube video explaining the research to a general audience, especially the connection to real-world applications like photosynthesis, vision, radiation damage and solar energy. We will also continue to contribute to the Northern Ireland Science Festival, through the annual exhibit of the School of Mathematics and Physics in the Ulster Museum (http://www.nisciencefestival.com/programme.php?c=maths_and_physics).
Code developments within this project will be shared with other developers of R-matrix based software for atomic and molecular processes impacting, for example, on the diagnostics of plasmas and their contamination in nuclear fusion reactors. Better understanding of all processes occurring within a reactor will ultimately enable the development of such reactors for energy generation. The software will also be made available to researchers at STFC Daresbury Laboratory and the Irish Centre for High-End Computing for porting onto emerging compute technologies, with a view to inclusion in application benchmark suites.
The codes will impact on the study of processes involving sub-femtosecond electron dynamics, an area which has opened up with the advance of short-pulse light technology. This dynamics underpins photochemical processes of fundamental importance, including photosynthesis, vision and the function and manufacture of solar cells. The capability to treat light with arbitrary polarisation will enable better understanding of the chiral nature of asymmetric molecules. Accurate measurement techniques which probe this chirality are in demand because of the proliferation of chiral molecules in medical applications, and the potentially very dangerous use of apparently equivalent molecules of the wrong symmetry (e.g.Thalidomide).
The proposed developments will also impact on emerging laser technologies based on high harmonic generation (HHG), and on emerging measurement techniques such as multidimensional spectroscopy. These techniques rely on full spatial control over the electronic wavepackets, which can be achieved using circularly polarised or cross polarised light pulses. Our work will allow modelling of the full motion of the electron wavepacket, providing unparalleled insight into possible optimisations and applications of HHG and new measurement techniques.
The UKRmol+ suite is used worldwide to study electron and positron collisions with molecules. Developments will enable current users to tackle problems of applied interest (e.g. processes relevant to focused electron beam induced deposition and damage induced by ionisation radiation in the cell). In addition, since the new suite will enable efficient calculation of quantities required for photoionisation calculations, it will open up its use to a new community.
This suite will be taken up by Quantemol Ltd., who provide expert-system software for quantum mechanical problems of practical importance. Quantemol is currently involved with academic and industrial research in technological plasmas. Quantemol will adapt their products for use with the UKRmol+ suite, which will increase their customer base. The description of the interaction of molecules and light will furthermore allow new product development.
Building on the OU's long history of collaboration with the BBC, we will make a YouTube video explaining the research to a general audience, especially the connection to real-world applications like photosynthesis, vision, radiation damage and solar energy. We will also continue to contribute to the Northern Ireland Science Festival, through the annual exhibit of the School of Mathematics and Physics in the Ulster Museum (http://www.nisciencefestival.com/programme.php?c=maths_and_physics).
Organisations
Publications
Armstrong G
(2020)
Electron correlation and short-range dynamics in attosecond angular streaking
in Physical Review A
Armstrong G
(2021)
Enhancing spin polarization using ultrafast angular streaking
Armstrong G
(2019)
Modeling tomographic measurements of photoelectron vortices in counter-rotating circularly polarized laser pulses
in Physical Review A
Armstrong G
(2021)
Enhancing spin polarization using ultrafast angular streaking
in Physical Review A
Armstrong G
(2019)
Electron rotational asymmetry in strong-field photodetachment from F - by circularly polarized laser pulses
in Physical Review A
Bartschat K
(2020)
Computational treatment of electron and photon collisions with atoms, ions, and molecules: the legacy of Philip G Burke
in Journal of Physics B: Atomic, Molecular and Optical Physics
Benda J
(2020)
Photoionization of H 2 using the molecular R-matrix with time approach
in Journal of Physics: Conference Series
Description | We have completed the main objective of the project: the development of a time-dependent code (R-matrix with time dependence, or RMT) for the description of ultra-fast atomic and molecular dynamics in arbitrarily polarised light fields. The accuracy of the code has been verified by several test cases involving both atomic and molecular systems: For atomic systems, we studied the electrons ejected from a helium atom irradiated by a sequence of circularly polarised laser pulses, and obtained excellent agreement with benchmark work. Very little benchmark data is available for molecular systems, but we obtained one-, two- and four-photon ionisation rates for molecular hydrogen in excellent agreement with previous work. Very recently, the time-dependent code has been applied to study non-perturbative photoionization dynamics of water. In support of the development of the application of the RMT codes to molecular systems, an updated version of the underpinning molecular codes for scattering, UK-Rmol+, has been produced. This new version enables the use of molecular orbitals obtained from Molpro calculations. It also allows a mixed Gaussian-B-spline basis to be used for the scattering functions to enhance the numerical stability required for time-dependent calculations. The current versions of both RMT and UKRMol+ are made available to the community through recent publications in a scientific journal, which include full explanations of the code and test suites. The codes are also available through a centrally managed code repository, which provides a continually updated source of documentation and code, as well as management of the code development and a forum for its developers. An important outcome of this project is a unification of various, divergent development strands. RMT is now a single, centrally maintained code comprising the previously separate capabilities to describe arbitrary polarisation, molecular systems and semi-relativistic dynamics. Because the project is centrally managed, well documented and version controlled, the entire development effort is concerted, and benefits in one area are more readily felt in the others. It has also allowed us to make the codes publicly available, which we anticipate will grow the user base, and allow researchers outside our institutions to use the codes for their own research. The RMT code has been applied to a number of scientific studies including the emission profile of co-rotating and counter-rotating electrons from the negative fluorine atom, when irradiated by circular polarised light field, and the tomographic study of vortex features in multiphoton ionisation of potassium. Additionally, the code has been updated further to enable the description of semi-relativistic systems, described within the Breit-Pauli approximation. This enables the description of the key dynamics introduced by the relativistic spin-orbit interaction. A demonstration of this capability showed signatures of the spin-orbit interaction in the yield of an autoionising state. Having a code with all of these capabilities opens up new areas of research, including the further study of relativistic effects in within atoms, and a vast area of study in molecular dynamics in ultra-short light fields. There are no other codes which can describe these phenomena, and thus this project represents a significant additional to the scientific toolbox. |
Exploitation Route | The codes have been made available to the community through scientific publication and code repositories. This will allow other users to exploit these codes for the investigation of ultra-fast dynamics in atoms and small molecules. We aim to support a wide range of future research, potentially leading to, for example, applications of novel laser technology. The codes provide a strong foundation for future code developments. As part of the project, we have put new code maintenance arrangements in place, which will facilitate new developments in response to changing technology, both in terms of computational hardware and of scientific capability. This will make it easier to support the development of new software in response to new areas of research interest, and expand the user community of the codes. |
Sectors | Digital/Communication/Information Technologies (including Software) Manufacturing including Industrial Biotechology |
Description | This particular project focused on the development of new capability within the atomic, molecular and optical physics community to describe ultra-fast processes. The codes have been made available to the community via Github through the UK-AMOR collaboration. The codes will facilitate experimental groups with the interpretation of their experimental data at the forefront of research in ultra-fast science. Better support for these experiments will facilitate the transfer of new ideas across other areas of science and into applications. To further facilitate uptake of the codes by users, the codes are part of a new public service, the AMOS gateway initiative for atomic, molecular and optical science at amosgateway.org. This gateway aims to make it easier for users to access state-of-the-art codes by providing a direct interface to these codes, instead of asking users to download and install codes themselves. In addition, the gateway provides direct access to facilities which will run these codes efficiently. The key aim of the gateway is to break down the initial barriers that users face in trying out state-of-the-art software. The increasing success of this facility owes significantly to the provision of a wide range of leading-edge codes. The standard and capabilities of the codes developed in this project make the codes cornerstones of this facility. One of the prime benefits of this facility has been the training of young researchers. Code training events require good access to the codes and good access to servers capable of running the codes efficiently. The central gateway has made the organisation of these events much easier by providing all the necessary infrastructure for running the codes. Local organisers of training events therefore only need to provide standard resources. This vastly improves the quality of workshops in which young researchers can be trained in the use of the codes, makes it easier to train a wider range of scientists in the use of the codes and thereby facilitates subsequent application of the codes to leading-edge scientific and technological problems. |
First Year Of Impact | 2020 |
Sector | Digital/Communication/Information Technologies (including Software),Education |
Impact Types | Policy & public services |
Description | AQuA DIP: Advanced Quantum Approaches to Double Ionisation Processes |
Amount | £865,857 (GBP) |
Funding ID | EP/T019530/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 04/2020 |
End | 10/2024 |
Description | Embedded CSE (eCSE) support (ARCHER) |
Amount | £95,000 (GBP) |
Organisation | University of Edinburgh |
Department | Edinburgh Parallel Computing Centre (EPCC) |
Sector | Academic/University |
Country | United Kingdom |
Start | 03/2019 |
End | 09/2019 |
Description | PARAMOR- Platform And Resource for Atomic, Molecular and Optical Research |
Amount | £668,309 (GBP) |
Funding ID | EP/V05208X/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2021 |
End | 06/2026 |
Description | UK Atomic, Molecular and Optical physics R-matrix consortium (UK AMOR) |
Amount | £368,071 (GBP) |
Funding ID | EP/R029342/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2018 |
End | 07/2023 |
Description | embedded computational science and engineering scheme (Archer) |
Amount | £96,000 (GBP) |
Organisation | ARCHER |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2019 |
End | 09/2019 |
Title | Atomic partial wave meter by attosecond coincidence metrology |
Description | all the raw data for the main figures of our literature "Atomic partial wave meter by attosecond coincidence metrology" |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Data led to the publication of one associated paper, with one further paper in production, and a continued collaboration with an experimental group |
URL | https://zenodo.org/record/6925094 |
Title | Cooper Minimum in PICS and HHG spectra in Ar+ |
Description | Data for harmonic generation spectra and photoionisation cross section from neutral and singly ionized argon/ |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | none yet |
URL | https://pure.qub.ac.uk/portal/en/datasets/cooper-minimum-in-pics-and-hhg-spectra-in-ar(df98f631-13ce... |
Title | Data for Resolving Ultra-Fast Spin-Orbit Dynamics in Heavy Many-Electron Atoms |
Description | Data associated with the manuscript Resolving "Ultra-Fast Spin-Orbit Dynamics in Heavy Many-Electron Atoms" |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Proposed Experimental scheme for resolving ultrafast spin-orbit dynamics in autoionisation |
URL | https://pure.qub.ac.uk/portal/en/datasets/data-for-resolving-ultrafast-spinorbit-dynamics-in-heavy-m... |
Title | Dataset for "Enhancing spin polarization using ultrafast angular streaking" |
Description | This dataset contains result pertaining to a forthcoming paper "Enhancing spin polarization using ultrafast angular streaking" to be published in Physical Review A. Data included are the text files used to generate the figures, as well as python plot scripts. |
Type Of Material | Database/Collection of data |
Year Produced | 2021 |
Provided To Others? | Yes |
Impact | First demonstration of angular streaking technique to isolate spin-polarised electrons |
URL | https://pure.qub.ac.uk/en/datasets/dataset-for-enhancing-spin-polarization-using-ultrafast-angular-s... |
Title | Electron correlation and short-range dynamics in attosecond angular streaking in the Fluorine anion. |
Description | This dataset contains results from an article "Electron correlation and short-range dynamics in attosecond angular streaking" to be published in Physical Review A. Data included are the input files needed to run the calculations, and output text files and plot scripts used to generate the figures. In particular the data represent the radial electronic wave function of the Fluorine anion after irradiation by an 800nm laser pulse. These data may then be constructed into angularly resolved spectra using the plot scripts provided. As explained in the associated article, the results demonstrate a negative angular shift in the main photoelectron peak. This indicates that the angular shifts found in attosecond angular streaking experiments may not be attributed directly to the Coulombic interaction with the residual ion, because, in this particular instance, the residual 'ion' is neutral. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | Indicates that the angular shifts found in attosecond angular streaking experiments may not be attributed directly to the Coulombic interaction with the residual ion, because, in this particular instance, the residual 'ion' is neutral. |
URL | https://pure.qub.ac.uk/en/datasets/electron-correlation-and-shortrange-dynamics-in-attosecond-angula... |
Title | Electron vortices in He and F- |
Description | These data are raw wave function data for He and F- interacting with arbitrarily polarised light fields. The data are produced by the R-matrix with time-dependence code. Instructions for post-processing can be found in the README file. |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | Several papers on electron vortices followed |
URL | https://pure.qub.ac.uk/portal/en/datasets/electron-vortices-in-he-and-f(668e9c0f-a1f1-4d48-b982-56b3... |
Title | Extreme-ultraviolet-initiated High-harmonic Generation in Ar+ |
Description | Data relevant to paper: Extreme-ultraviolet-initiated High-harmonic Generation in Ar+ published in physical review A (2018) This is the raw RMT data for calculations of the harmonic spectra, generated by Ar+, in both single (IR) and two-colour (XUV + IR) laser fields. The data are contained in a set of directories, named in accordance with their corresponding figures in the article. Each file, in turn, is named consistently with the label for the spectrum appearing in the appropriate figure (e.g., in the legend). The only exception to this pertains to Figure 8(a), for which the individual data files have been named according to the time delay between the XUV and IR pulses. Note that the latter are specified in units of the XUV pulse period. For precise details regarding the choice of pulse parameters, please refer to the main text and figure captions of the article. |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | None yet |
URL | https://pure.qub.ac.uk/portal/en/datasets/extremeultravioletinitiated-highharmonic-generation-in-ar(... |
Title | Modeling tomographic measurements of photoelectron vortices in counter-rotating circularly polarized laser pulses |
Description | This dataset contains result pertaining to a forthcoming paper "Modeling tomographic measurements of photoelectron vortices in counter-rotating circularly polarized laser pulses" to be published in Physical Review A. Data included are the input files, output files, and text files used to generate the figures. |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | First full ab-initio theoretical modelling of tomography in electron vortices for general. multielectron systems |
URL | https://pure.qub.ac.uk/en/datasets/modeling-tomographic-measurements-of-photoelectron-vortices-in-co... |
Title | Perturbative and non-perturbative photoionization of H2 and H2O using RMT |
Description | Data generated with the R-matrix with time (RTM) and UKRMol+ suites for the paper 'Perturbative and non-perturbative photoionization of H2and H2O using the molecular "R-matrix with time" method'. It includes: two-photon ionization cross sections for H2, beta parameter for one-photon ionization of H2, cross sections and beta parameter for one-photon ionization of H2O and yields for strong-field ionization of H2O. Further details can be found in the associated publication and in the README file provided with the data sets. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | None yet |
URL | https://ordo.open.ac.uk/articles/dataset/Perturbative_and_non-perturbative_photoionization_of_H2_and... |
Title | RMT repository test data |
Description | This data set contains all of the test data which was previously housed in the R-matrix with time-dependence (RMT) repository at https://gitlab.com/Uk-amor/RMT/rmt. There are four separate directories: atomic_big, atomic_small and molecular_tests contain sample inputs and outputs for rmt calculations. field_tests contains inputs and outputs for the field_check utility. Each test calculation contains an inputs and rmt_output directory. Calculations were performed with RMT compiled with the gnu compiler running on the ARCHER2 supercomputer. |
Type Of Material | Database/Collection of data |
Year Produced | 2023 |
Provided To Others? | Yes |
URL | https://zenodo.org/record/8370703 |
Title | RMT: R-matrix with time-dependence. Solving the semi-relativistic, time-dependent Schrodinger equation for general, multi-electron atoms and molecules in intense, ultrashort, arbitrarily polarized laser pulses |
Description | RMT is a program which solves the time-dependent Schrödinger equation for general, multielectron atoms, ions and molecules interacting with laser light. As such it can be used to model ionization (single-photon, multiphoton and strong-field), recollision (high-harmonic generation, strong-field rescattering) and, more generally, absorption or scattering processes with a full account of the multielectron correlation effects in a time-dependent manner. Calculations can be performed for targets interacting with ultrashort, intense laser pulses of long wavelength and arbitrary polarization. Calculations for atoms can optionally include the Breit-Pauli correction terms for the description of relativistic (in particular, spin-orbit) effects. |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
URL | https://data.mendeley.com/datasets/3ptyfg2bmx |
Title | Rotational asymmetry in photodetachment from F- in circularly polarised laser fields |
Description | These data are raw wave functions for F- following photo detachment by circularly polarised laser fields. The data are produced using the R-matrix with time-dependence code. Information on the datasets and their post processing may be found the the README file and channel data file. |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | None yet |
URL | https://pure.qub.ac.uk/portal/en/datasets/rotational-asymmetry-in-photodetachment-from-f-in-circular... |
Title | UKRmol+: A suite for modelling electronic processes in molecules interacting with electrons, positrons and photons using the R-matrix method |
Description | UKRmol+ is a new implementation of the time-independent UK R-matrix electron-molecule scattering code. Key features of the implementation are the use of quantum chemistry codes such as Molpro to provide target molecular orbitals; the optional use of mixed Gaussian - B-spline basis functions to represent the continuum and improved configuration and Hamiltonian generation. The code is described, and examples covering electron collisions from a range of targets, positron collisions and photoionization are presented. The codes are freely available as a tarball from Zenodo. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
URL | https://data.mendeley.com/datasets/k3ny7zcfrb/1 |
Title | UKRmol+: A suite for modelling electronic processes in molecules interacting with electrons, positrons and photons using the R-matrix method |
Description | UKRmol+ is a new implementation of the time-independent UK R-matrix electron-molecule scattering code. Key features of the implementation are the use of quantum chemistry codes such as Molpro to provide target molecular orbitals; the optional use of mixed Gaussian - B-spline basis functions to represent the continuum and improved configuration and Hamiltonian generation. The code is described, and examples covering electron collisions from a range of targets, positron collisions and photoionization are presented. The codes are freely available as a tarball from Zenodo. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
URL | https://data.mendeley.com/datasets/k3ny7zcfrb |
Title | lhutcheson/ATAS_xenon: |
Description | Data and scripts for paper entitled: Core-resonance line-shape analysis of atoms undergoing strong-field ionization. Removed redundant scripts. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Data led to the publication of an associated paper, and further collaborative work with an experimental group |
URL | https://zenodo.org/record/6683951 |
Title | GBTOlib: a high-performance library for evaluation of molecular integrals |
Description | GBTOlib: a high-performance library for evaluation of molecular integrals. This library is used by the UKRmol+ codes but has a general applicability and has been written to allow interfacing with other codes. Capabilities Evaluation of molecular integrals in the basis of atom-centered Gaussian orbitals and center-of-mass centered B-splines and/or Gaussians. The center-of-mass (i.e. continuum) basis can be built from either Gaussians, B-splines or a combination of the two. An arbitrary angular momentum for the continuum basis. Transformation of the atomic integrals into basis of molecular orbitals. Orbital orthogonalization using Gramm-Schmidt and/or Symmetric orthogonalization. Flexible configuration of the library allowing it to be ran on various machines ranging from single-node workstations to massively-parallel HPC architectures. Possibility to configure the library to use quadruple precision arithmetics and achieve higher than double precision of the actual integrals calculated. Input of molecular geometry, Gaussian basis and orbitals via the standard MOLDEN file. |
Type Of Technology | Software |
Year Produced | 2021 |
Open Source License? | Yes |
Impact | NA |
URL | https://zenodo.org/record/5798035 |
Title | GBTOlib: a high-performance library for evaluation of molecular integrals |
Description | This is the first public release of the GBTOlib library. This library is used by the UKRmol+ codes but has a general applicability and has been written to allow interfacing with other codes. Capabilities Evaluation of molecular integrals in the basis of atom-centered Gaussian orbitals and center-of-mass centered B-splines and/or Gaussians. The center-of-mass (i.e. continuum) basis can be built from either Gaussians, B-splines or a combination of the two. An arbitrary angular momentum for the continuum basis. Transformation of the atomic integrals into basis of molecular orbitals. Orbital orthogonalization using Gramm-Schmidt and/or Symmetric orthogonalization. Flexible configuration of the library allowing it to be ran on various machines ranging from single-node workstations to massively-parallel HPC architectures. Possibility to configure the library to use quadruple precision arithmetics and achieve higher than double precision of the actual integrals calculated. Input of molecular geometry, Gaussian basis and orbitals via the standard MOLDEN file. Notes for version 3.0 The main improvement in this version is the implementation of the MPI (distributed) evaluation of the mixed BTO/GTO integrals and the subsequent sparse integral transformation. In principle this allows to run arbitrarily large calculations using BTOs without an intermediate I/O only by increasing the total number of nodes (total memory) available for the calculation. In practice we have encountered some problems with very large calculations (even though the 32bit limitation of the MPI standard has been taken into account) but we deem those problems to be caused by limitations of the MPI libraries used rather than by GBTOlib itself. Features added in this version: Implemented MPI evaluation of the mixed BTO/GTO integrals. Implemented MPI version of the sparse integral transformation. Renaming of the modules to ensure unique and uniform naming: all GBTOlib modules now carry the _gbl suffix. Optional calculation of exponentially damped dipole matrix elements implemented for all types of atomic integrals; new parameter in namelist process_control scatci_integrals now allows reuse of previously calculated AO/MO using basis_input in namelist process_control to indicate file path; allows sign-consistent calculations Molecular orbitals in the Molden format can now be written even if BTO basis is used (only GTO contribution considered); this is mostly useful in connection with UKRmol+ to write out the Dyson orbitals from calculations including BTOs. Backward compatibility with v1.0 integral files implemented scatci_integrals now exits early if integral file exists Verbosity control for GBTOlib implemented and keyword added to redirect output to terminal Some keywords added to documentation Some improvements to memory allocation Changes to what is/is not printed by default: different verbosity levels (1-4) can now be selected using the 'verbosity' flag in the namelist process_control for scatci_integrals. Change of intent of some variables; avoids compiler warning when compiling with Intel Fortran 2020 Minimal basis test for H2 added Bugs corrected: to prevent memory leak in free_scattering_gbl module accurate memory allocation in routine eval_CGTO_shell_pair_pw_expansion to avoid invalid memory acces to avoid integer overflow (in routine eval_boys) in LP64 mode so evaluation of amplitudes for irreducible representations without orbitals is skipped in integrals_D2h_photoionization_CC_parallel test when 32-bit MPI library is used when writing of a MOLDEN file when equivalent atoms are presentand when the order of the atoms does not match the order of the centers of the GTOs in the basis. |
Type Of Technology | Software |
Year Produced | 2020 |
Open Source License? | Yes |
Impact | None yet |
URL | https://zenodo.org/record/4118421 |
Title | Inner region programs for the reengineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules |
Description | Inner region programs for the reengineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules (BTO/GTO continuum). Generates transition moments for the study of photon-induced processes and input for RMT. |
Type Of Technology | Software |
Year Produced | 2021 |
Open Source License? | Yes |
Impact | NA |
URL | https://doi.org/10.5281/zenodo.5799110 |
Title | RMT: R-matrix with time-dependence |
Description | RMT is a program which solves the time-dependent Schrödinger equation for general, multielectron atoms, ions and molecules interacting with laser light. As such it can be used to model ionization (single-photon, multiphoton and strong-field), recollision (high-harmonic generation, strong-field rescattering) and, more generally, absorption or scattering processes with a full account of the multielectron correlation effects in a time-dependent manner. Calculations can be performed for targets interacting with ultrashort, intense laser pulses of long wavelength and arbitrary polarization. Calculations for atoms can optionally include the Breit-Pauli correction terms for the description of relativistic (in particular, spin-orbit) effects. |
Type Of Technology | Software |
Year Produced | 2019 |
Open Source License? | Yes |
Impact | Several papers and data sets have been produced using calculations from RMT |
URL | https://www.sciencedirect.com/science/article/abs/pii/S0010465519303856 |
Title | Time-dependent R-matrix code for atomic dynamics in arbitrarily polarized light |
Description | This is a software package building on existing RMT software to allow the description of atomic systems in arbitrarily polarised light. This can include the dynamics under linear polarised light, circular polarised light, elliptically polarised light, or any combination thereof. Hence, the electric field probing the atom is free to point in any direction, and it thus becomes possible to study the effects of new laser-driven processes in atoms. |
Type Of Technology | Software |
Year Produced | 2018 |
Impact | This software has only recently been developed, and |
Title | Time-dependent R-matrix code for the description of atomic and molecular systems in arbitrarily polarised light including semi-relativistic systems |
Description | A highly parallelised scientific code that enables the description of atomic and molecular systems in ultra-short light fields of arbitrary polarisation. This code has the capability to describe semi-relativistic systems accounting for the spin-orbit interaction. |
Type Of Technology | Software |
Year Produced | 2019 |
Open Source License? | Yes |
Impact | This code has enabled scientific studies on the impact of spin-orbit dynamics on the atomic response to intense laser light. It has also enabled studies on ultrafast dynamics in arbitrary polarised light. The codes have also been applied to study ultrafast molecular dynamics. |
Title | UKRMol+: UKRMol-out |
Description | Outer region programs for the re-engineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules (BTO/GTO continuum). Also calculates photoionization cross sections. |
Type Of Technology | Software |
Year Produced | 2021 |
Open Source License? | Yes |
Impact | NA |
URL | https://zenodo.org/record/5799134 |
Title | UKRMol+: UKRMol-out |
Description | Outer region programs for the reengineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules (BTO/GTO continuum). Also calculates photoionization cross sections. Features of this version: DIPELM now runs the smoothing option as multi-threaded in both ismooth = 1 (new) and ismooth = 2 cases. In addition: Bug corrected in: MPI_RSOLVE that lead to incorrect behaviour when skipping energies or energies were too close to threshold DIPELM that only affected evaluation of oriented dipoles for point groups where the partial wave (l,m)=(0,0)(l,m) = (0,0)(l,m)=(0,0) contributes to the value of the dipole. Other minor bugs also corrected. This version should use GBTOlib 3.0.1. For a complete list of the authors who contributed to this software see https://www.ukamor.com/ and a file in the release tarball (after release 3.1). |
Type Of Technology | Software |
Year Produced | 2020 |
Open Source License? | Yes |
Impact | None yet |
URL | https://zenodo.org/record/4120626 |
Title | UKRmol+ (v3.0) suite for modelling of electronic processes in molecules interactingwith electrons, positrons and photons using the R-matrix method |
Description | UKRmol+ is a new implementation of the time-independent UK R-matrix electron-molecule scattering code. Key features of the implementation are the use of quantum chemistry codes such as Molpro to provide target molecular orbitals; the optional use of mixed Gaussian - B-spline basis functions to represent the continuum and improved configuration and Hamiltonian generation. The code is described, and examples covering electron collisions from a range of targets, positron collisions and photoionization are presented. The codes are freely available as a tarball from Zenodo. |
Type Of Technology | Software |
Year Produced | 2019 |
Open Source License? | Yes |
Impact | The suite has had ~150 downloads and more than 500 views on Zenodo. |
URL | https://gitlab.com/Uk-amor |
Title | UKRmol+ suite: ukrmol-in |
Description | Inner region programs for the reengineered UK computational implementation of the R-matrix method for the treatment of electron and positron scattering from molecules (BTO/GTO continuum). Generates transition moments for the study of photon-induced processes and input for RMT |
Type Of Technology | Software |
Year Produced | 2020 |
Open Source License? | Yes |
Impact | None yet |
URL | https://zenodo.org/record/4120705 |
Description | Advanced MPI training meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Postgraduate students |
Results and Impact | Training was provided to postgraduate students from several institutions in the use of Advanced MPI techniques. |
Year(s) Of Engagement Activity | 2018 |
Description | Attochem conference 2020 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | International conference on Attosecond dynamics in atoms and molecules. Dr. Andrew Brown gave a talk entitled "The RMT project" during which he reported on recent results obtained and tools developed under the auspices of the UK-AMOR consortium. The major impact was the arrangement of several new collaborative studies with audience members. |
Year(s) Of Engagement Activity | 2020 |
URL | https://atom.ubbcluj.ro/attochem/#attochem-registration |
Description | Industry sponsored workshop for code users |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | 32 researchers attended a two day workshop at UCL. The workshop was co-sponsored and organised by Quantemol Ltd. an industrial partner. The workshop was divided into several hands-on sessions where the computer codes developed as part of the grant were demonstrated. One session was devoted to training in version control software tools provided by a representative from the ARCHER supercomputing service. One session was used to discuss the scientific impact of the work. |
Year(s) Of Engagement Activity | 2019 |
URL | https://rmadam2019.wordpress.com/home/programme/ |
Description | International workshop on atomic and molecular physics software |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Workshop entitled, "A Science Gateway for Atomic and Molecular Physics" to explore mechanisms to collectively make codes available and easier to use by the partners as well as others in the community. The workshop involved describing the science and the computational details of our codes to a larger community with the goal of making them available and useful to others and to also invite people who have similar interests to consider more direct participation in the project. It involved demonstrations on the use of softare, in particular the UKRmol+ suite. |
Year(s) Of Engagement Activity | 2019 |
URL | https://ampgateway.org/media/documents/AMP-Gateway-Workshop-Dec2019-at-NIST.pdf |
Description | UK-AMOR kick-off meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Postgraduate students |
Results and Impact | This was a collaborative workshop involving many research groups within the UK, who are working with the R-matrix codes. An overview of the development work being undertaken was given, alongside a presentation of research enabled by these developments. Groups who use the R-matrix codes attended the meeting so that feedback on these developments could be obtained. The meeting also provided an overview of the current set-up for distribution of the codes to interested end-users. |
Year(s) Of Engagement Activity | 2018 |