Clearing the undergrowth: new NMR techniques for high dynamic range mixtures

Lead Research Organisation: University of Manchester
Department Name: Chemistry

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is one of the most useful methods for studying the structures and behaviours of molecules, and of critical importance both in understanding the world around us and in developing new technologies. It is a particularly powerful tool for determining the chemical structures of pure compounds. However, Nature is more complicated, and some of the most interesting scientific challenges present themselves as complex mixtures. These often have very crowded NMR spectra, due to the presence of many species with many different concentrations, and the spectra are therefore very difficult (sometimes impossible) to interpret. Chemists and life scientists fight a continual battle to extract qualitative and quantitative information from the multiple overlapping signals that are found in most NMR spectra of complex mixtures. New NMR methods are urgently needed to allow us to address a wider range of scientific problems, and to reduce the time and effort needed to extract chemical and biological information from mixtures.

This proposal describes a series of novel NMR methods that address some of the most challenging problems in the field of mixture analysis, especially those of high dynamic range mixtures. We will demonstrate how ultraclean spectra, free of extraneous signals (e.g. satellites and artefacts), can be obtained, allowing us to identify and quantify components at least down to the 0.1% level (the current regulatory limit in the pharmaceutical industry). We will also show how - by reducing the complexity of NMR spectra, using "pure shift" methods that collapse multiplet signals into singlets and/or "spectral editing" methods that pick out the signals of individual components - structure determination of the components of intact mixtures can be achieved simply and efficiently. The common thread is that all these new methods are focused on increasing the amount of qualitative, quantitative and structural information obtainable from the spectra of intact mixtures.

These new methods will have direct applications across a wide range of academic and industrial research areas, including chemistry, biochemistry, biology, pharmacy, petrochemistry, agrochemistry, healthcare, and flavours and fragrances.

Planned Impact

Who will benefit from this research?

NMR spectroscopy is a crucial underpinning technique for many of the UK's wealth-generating industrial sectors, including the pharmaceutical, petrochemical and biotechnological industries, and a vital component of almost all research in synthetic chemistry. It is essential to the development of healthcare technologies, in particular for drug discovery and pharmaceutical process development, and throughout the chemical industry. NMR is widely used in chemical, biological and medical research, in academic, industrial and government laboratories, and is crucial to the identification of species and the determination of their structures. In real life, scientists rarely work with completely pure compounds, and most of their samples present themselves as mixtures. For many NMR users the easy and reliable analysis of complex mixtures is still one of the greatest challenges.

How will they benefit from this research?

We will develop significantly more powerful tools for NMR spectroscopy, pushing back the limits of current methods for mixture analysis. We will equip both academic researchers and core UK industries with enhanced resolution and spectral quality. The new methods will produce cleaner, simpler spectra, allowing faster, easier and more reliable extraction of structural information than with current methods. They will work on industry-standard commercial spectrometers, without the need for hardware modification. Equipping researchers with higher resolution NMR tools will enhance wealth generation in all of the sectors noted above, and impact on health through improved methods for the characterisation of potential drugs and APIs, for the development and regulatory approval of new processes for the production of APIs, and for the analysis of biofluids in toxicology and metabolomics. Current regulations require that all species present in active pharmaceutical ingredients at levels above 0.1% be identified and quantified, but present NMR methods struggle to deliver clean results below the 1% level. Here the novel methods we propose will reduce the levels of interfering signals by over an order of magnitude.

Our results will be made freely available on the web, enabling early adoption by industrial and academic users alike, and we will collaborate with instrument manufacturers to minimise barriers to the implementation of the new experiments. A secondary impact of the research will be the enhanced development of a highly-skilled postdoctoral fellow and researcher co-investigator, with transferable skills in organisation, communication, critical and creative thinking, and exploitation of information technologies that are fundamental to research in the physical sciences. From previous experience we anticipate take-up of new methods within 12-18 months of development; it is never easy to second-guess progress, particularly where NMR is concerned, but previous methodological developments in this area (e.g. multidimensional NMR methods) have had useful lifetimes measured in decades.

Publications

10 25 50
 
Description A new open-source package for processing of a variety of different types of NMR data, including data from diffision-ordered spectroscopy experiments, the General NMR Analysis Toolbox (GNAT) has been developed, and a new package within the GNAT (MAGNATE) has been developed for processing experimental 3D NMR data.

New methods for ultra-selective excitation in NMR spectroscopy, GEMSTONE, and for the measurement of transverse relaxation in NMR, TRUE, have been developed.
Exploitation Route The new software allows a wide range of experimental data to be processed, and should be of use across a wide range of science. The GEMSTONE method has already been shown to work well in selective NOESY and selective TOCSY experiments, and is suitable for a range of other applications. TRUE allows the true rate of decoherence to be measured in coupled spin systems.
Sectors Agriculture, Food and Drink,Chemicals,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL https://www.nmr.chemistry.manchester.ac.uk/?q=node/450
 
Description Our open-source GNAT and MAGNATE software is being widely used in both academic and industrial laboratories.
First Year Of Impact 2018
Sector Agriculture, Food and Drink,Chemicals,Pharmaceuticals and Medical Biotechnology
Impact Types Economic

 
Title Improved quantification by NMR spectroscopy of the fatty acid ester composition of extra virgin olive oils 
Description Experimental proton and DISPEL data for analysis of olive oil. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Improved_quantification_by_NMR_spectroscopy_of_th...
 
Title Improved quantification by NMR spectroscopy of the fatty acid ester composition of extra virgin olive oils 
Description Experimental proton and DISPEL data for analysis of olive oil. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Improved_quantification_by_NMR_spectroscopy_of_th...
 
Title Pure Shift 2D NMR Spectroscopy 
Description raw experimental data for the book chapter "Pure Shift 2D NMR Spectroscopy" 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Pure_Shift_2D_NMR_Spectroscopy/19729807/1
 
Title Pure Shift 2D NMR Spectroscopy 
Description raw experimental data for the book chapter "Pure Shift 2D NMR Spectroscopy" 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Pure_Shift_2D_NMR_Spectroscopy/19729807
 
Title Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy 
Description This folder contains all NMR raw data for the publication entitled "Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy", as well as relevant pulse programs for Bruker spectrometers, shapes files and processing macros. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Simultaneous_broadband_suppression_of_homonuclear...
 
Title Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy 
Description This folder contains all NMR raw data for the publication entitled "Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy", as well as relevant pulse programs for Bruker spectrometers, shapes files and processing macros. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Simultaneous_broadband_suppression_of_homonuclear...
 
Title Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy 
Description This folder contains all NMR raw data for the publication entitled "Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy", as well as relevant pulse programs for Bruker spectrometers, shapes files and processing macros. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Simultaneous_broadband_suppression_of_homonuclear...
 
Title Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy 
Description This folder contains all NMR raw data for the publication entitled "Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy", as well as relevant pulse programs for Bruker spectrometers, shapes files and processing macros. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Simultaneous_broadband_suppression_of_homonuclear...
 
Title Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy 
Description This folder contains all NMR raw data for the publication entitled "Simultaneous broadband suppression of homonuclear and heteronuclear couplings in 1H NMR spectroscopy", as well as relevant pulse programs for Bruker spectrometers, shapes files and processing macros. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Simultaneous_broadband_suppression_of_homonuclear...
 
Title experimental data for the PUREST experiment 
Description Experimental NMR data for the PUREST experiment. This also include associated macros, pulse programs and other files. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/experimental_data_for_the_PUREST_experiment/20004...
 
Title experimental data for the PUREST experiment 
Description Experimental NMR data for the PUREST experiment. This also include associated macros, pulse programs and other files. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/experimental_data_for_the_PUREST_experiment/20004...
 
Title MAGNATE: New software for mixture analysis by 3D diffusion-ordered NMR spectroscopy 
Description MAGNATE is a package for processing 3D diffusion NMR data. It runs within the GNAT (General NMR Analysis Toolbox) environment. 
Type Of Technology Software 
Year Produced 2018 
Open Source License? Yes  
Impact This software has only just entered the public domain so it is too early to assess impact. 
URL https://www.nmr.chemistry.manchester.ac.uk/?q=node/450
 
Title The GNAT: A new tool for processing NMR data 
Description The GNAT (General NMR Analysis Toolbox) is a free and open-source software package for processing, visualising, and analysing NMR data. It supersedes the popular DOSY Toolbox, which has a narrower focus on diffusion NMR. Data import of most common formats from the major NMR platforms is supported, as well as a GNAT generic format. Key basic processing of NMR data (e.g., Fourier transformation, baseline correction, and phasing) is catered for within the program, as well as more advanced techniques (e.g., reference deconvolution and pure shift FID reconstruction). Analysis tools include DOSY and SCORE for diffusion data, ROSY T1/T2 estimation for relaxation data, and PARAFAC for multilinear analysis. The GNAT is written for the MATLAB® language and comes with a user-friendly graphical user interface. The standard version is intended to run with a MATLAB installation, but completely free-standing compiled versions for Windows, Mac, and Linux are also freely available. The lates version is dated January 2010. 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact The GNAT is now widely used for the processing of NMR data. 
URL https://www.nmr.chemistry.manchester.ac.uk/?q=node/430
 
Description Workshop on pure shift NMR methods 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A one-day workshop on pure shift NMR methods was held at the School of Chemistry, University of Manchester, Manchester UK on Tuesday 12th September. Speakers included Ralph Adams, Laura Castañar, Mohammadali Foroozandeh, Peter Kiraly, Gareth Morris and Mathias Nilsson.

Further details, and links to downloads, may be found at http://nmr.chemistry.manchester.ac.uk/pureshift.
Year(s) Of Engagement Activity 2017
URL http://nmr.chemistry.manchester.ac.uk/pureshift