Synthesis of novel brevicidine and laterocidine analogues active against multi-drug-resistant Gram-negative bacteria

Lead Research Organisation: Queen's University Belfast
Department Name: Sch of Chemistry and Chemical Eng

Abstract

Combatting antimicrobial resistance is one of the most significant challenges facing our generation. Bacteria are relentlessly developing new resistance mechanisms against clinical antibiotics, making infections much harder to treat. Therefore, there is an urgent need for new antimicrobial compounds and targets. Brevicidine and laterocidine are antimicrobial peptides that have strong activity against multidrug-resistant Gram-negative bacteria, a class of bacteria that are much harder to kill as they have an extra cell membrane. They are even active against Gram-negative organisms resistant to colistin, our current antibiotic of last resort. Therefore these peptides could be excellent antibiotic candidates. However, they are difficult to prepare by chemical synthesis and less stable than other types of cyclic peptides, and the mechanism by which they kill bacteria is not known. This project aims to develop new brevicidine and laterocidine analogues that are more stable, easier to prepare and have enhanced antimicrobial activity. We will also determine how they kill bacteria, which is important knowledge if these peptides are to become antibiotics.

Planned Impact

Economic Impact - Improving the health of the UK population will place less of a financial burden on the National health Service. Jim O'Neill's report on the cost of antimicrobial resistance by 2050 paints a worrying picture, both in terms of premature deaths (up to 10 million per year) and the global economy ($100 trillion spent by 2050). This project will facilitate the development of new antibiotics, reducing the economic cost of antimicrobial resistance and allowing tax money to be allocated to other public services.

Societal Impact - Antimicrobial resistance is one of the greatest problems facing our generation, with new resistance mechanisms continually emerging and deaths due to antimicrobial resistance on the rise. Our research will yield important mechanistic information about novel antibiotic compounds that could aid rational drug design. We will synthesise a large library of antimicrobial peptides through this project and the most promising candidates will be taken forward for further study through avenues such as the European Gram-Negative Antibacterial Engine (ENABLE) and sending compounds for advanced screening to the Community for Open Antimicrobial Drug Discovery (Co-ADD). As the project progresses, we will also make use of industrial engagement funding at QUB to identify project-partners who may be interested in further development of the antimicrobial compounds generated through this project.

Academic Impact - The EPSRC has identified the importance of growing the area of Chemical Biology and Biological Chemistry to establish UK excellence in this area. This project will provide a highly-skilled researcher in Chemical Biology through the training of a postdoctoral research associate (PDRA). The PDRA will receive expert training in all aspects of organic synthesis, molecular biology and microbiology. They will also develop management skills as they oversee the day-to-day activities of more junior lab members. By completion of this project, a new highly-skilled researcher in Chemical Biology will enter the UK workforce and their training will make them highly employable in an industrial or academic setting, where they will go on to train more researchers with the skills they have developed.

Personal Impact - With his previous award of an EPSRC New Investigator Award and publication of independent research articles and communications, the PI has demonstrated his ability to produce high-quality science with a small research group and resources. To achieve his ambition of becoming a world-leader in the development of novel antimicrobial compounds and targets, a larger research group and resources will be required. The addition of another PDRA and PhD student (QUB leverage studentship) to the Cochrane lab will allow more high-impact research to be performed and published, allowing the PI to develop a global reputation and further his career.
 
Description Bacteria produce antimicrobial compounds called brevidicine and laterocidine. This compounds kill the most sinister types of multi drug-resistant bacteria. We developed ways to produce these peptides, and made new versions that are easier and cheaper to make, more stable inside the body, and more effective at killing bacteria.
Exploitation Route We hope that our patent application on the antimicrobial compounds produced during this work will be licensed by a company to develop new antibiotics.
Sectors Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description A solid-state NMR instrument for Northern Ireland
Amount £956,055 (GBP)
Funding ID EP/W021390/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 02/2022 
End 12/2024
 
Description Interrogating the Nisin:lipid II Interaction: A Chemical Biology Approach
Amount £243,690 (GBP)
Funding ID EP/V032860/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 01/2022 
End 09/2024
 
Description Collaboration with Professor Nathaniel Martin at Leiden University 
Organisation Leiden University
Department Institute of Biology Leiden
Country Netherlands 
Sector Academic/University 
PI Contribution Through this EPSRC grant, our ability to synthesise labelled analogues of the essential bacterial glycolipid, lipid II, has become known in the research community. I was contacted by Professor Nathaniel Martin in 2019 enquiring about a collaboration between our groups, wherein we would synthesise labelled undecaprenyl-containing biomolecules and they would test these for binding to various antimicrobial compounds that they work with. As well as having direct impact through a publication together, it has lead to further collaborations on other projects between our groups. One collaboration involves my most recent EPSRC grant, EP/T01783X/1, so won't be reported here.
Collaborator Contribution The collaborators lab synthesise a variety of different antimicrobial peptides that bind to undecaprenyl-containing glycolipids, allowing us to test the labelled analogues we have prepared as part of this grant in antibiotic-binding assays.
Impact S. Chiorean, I. Antwi, D. W. Carney, I. Kotsogianni, A. M. Giltrap, F. M. Alexander, S. A. Cochrane, R. J. Payne, N. I. Martin, A. Henninot and J. C. Vederas. Dissecting the Binding Interactions of Teixobactin with the Bacterial Cell Wall Precursor Lipid II. ChemBioChem 2019, 21, 781.
Start Year 2019
 
Title Antibiotic Natural Product Analogues 
Description Antibiotic Natural Product Analogues 
IP Reference  
Protection Patent / Patent application
Year Protection Granted 2021
Licensed No
Impact Nothing to report yet
 
Description Presentation at 2023 European Peptide Symposium in Sitges, Spain 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I gave a talk entitled "Size matters: New synthetic analogues of brevicidine and laterocidine with improved properties and activity against multidrug-resistant Gram-negative bacteria." The audience was over 500 people, with a mix of industry, academia and funding agency representatives.
Year(s) Of Engagement Activity 2022
URL https://www.eurpepsoc.com/proceedings-of-the-36th-european-and-the-12th-international-peptide-sympos...
 
Description Presentation at the Chemical Biology Ireland conference in University College Dublin 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I gave a presentation entitled "Synthetic Non-Ribosomal Peptides that Selectively Target Gram-Negative Bacteria." There were between 100-200 conference delegates, including undergraduates, postgraduates, academics and industry.
Year(s) Of Engagement Activity 2022
URL https://sites.google.com/view/chembioireland2020/home
 
Description Virtual presentation at Wayne State University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I gave a presentation entitled "Peptides and Polyprenyls - Novel Chemical Strategies to Address Antimicrobial Resistance." This was an online presentation to the Department of Chemistry at Wayne State University. The audience was ~50 people, including academics and postgraduate students.
Year(s) Of Engagement Activity 2022
 
Description Visiting Speaker at Molecular Sciences Research Hub, Imperial College London 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact I was invited to the Molecular Sciences Research Hub at Imperial College London to talk about my groups work. The audience was composed of between 50 and 100 people, including undergraduates, postgraduates and academics
Year(s) Of Engagement Activity 2022