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Shining Light on Metalloprotein Mechanism: Single Protein Crystal Catalytic Studies Driven by 'Caged' Electron Sources

Lead Research Organisation: University of Leicester
Department Name: Chemistry

Abstract

Early reviews of time-resolved crystallography identified the need for generalised ways of triggering reactivity. Roughly 30-50% of proteins are redox proteins, one third of all proteins contain a redox-active metal, and approximately 22% of submissions to the PDB contain a transition metal, so new methods that enable time-resolved study of redox reactions using sub-turnover techniques will have significant academic impact. Pulse radiolysis or X-ray photoreduction are not generally for protein studies, causing primary and secondary radiation damage and leading to structural ambiguity in reduced states. The methods proposed here use lower energy triggers; we anticipate future use of longer wavelength chromophores, further minimising risk of photodamage.

The ambitious technical developments in this proposal have the potential to revolutionise biophysical capabilities, enabling studies of redox protein mechanism in exquisite chemical and structural detail. Combining single crystal spectroscopy, electrochemical control, and synchronous reaction initiation using a 'photo-caged' electron source we will build a platform technology with potentially transformative impact on biophysics and structural biology, and provide unprecedented possibilities to exploit time-resolved crystallographic and spectroscopic methods at national and international facilities. Thus far these methods have been largely inaccessible to 'real time' studies of redox proteins, as generalised methods to synchronise redox reactivity in the crystalline state do not exist. The methodology developed here overcomes the challenges of rapid triggering of electrochemical reactions in crystallo, whilst simultaneously allowing in situ infrared spectroscopic monitoring of transient redox species to characterise electrocatalytic reactions on sub-turnover timescales. This cutting-edge enabling technology will allow studies of previously inaccessible catalytic intermediates, driving scientific progress in biophysics, chemical and structural biology, and establishing the UK at the forefront of these unique and exciting scientific developments.

Publications

10 25 50
 
Description During the course of this award we developed a nanosecond time-resolved infrared spectrometer, for studying enzyme catalysed reactions on a fast timescale. Through the course of the project we have discovered fresh insights into how energy is transmitted in biology, in the form of electrons and hydrogen ions (protons), and found that contrary to common theory these particles do not necessarily transfer at the same time. The timing of proton and electron transfer plays a key role in determining the chemical behaviour of key enzymes involved in biological hydrogen metabolism.

The spectroscopic tools developed through this research are available to other members of the UK and international scientific community, and complement existing UK science infrastructure.
Exploitation Route The nanosecond time-resolved spectrometer and spectroscopic-electrochemical cells developed during the project are available to all and new collaborations have begun since completion of the grant. Publications are in progress that will be freely available to the global scientific community.
Sectors Chemicals

Energy

Environment

Other

 
Description Significant academic interest has been generated through this project, leading to potential new multidisciplinary research areas at the interface between physical and life sciences. The work represents a new breakthrough in understanding of energy transfer during biological redox catalysis, that has potential applications beyond the biological sciences in chemical catalysis and energy materials, for example.
First Year Of Impact 2023
Sector Other
Impact Types Policy & public services

 
Description STFC Life Sciences and Soft Materials Advisory Group
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://www.ukri.org/who-we-are/stfc/how-we-are-governed/advisory-boards/life-sciences-and-soft-mate...
 
Description NextGen Structural Biology under Electrochemical Control: Filling in Missing Intermediates in Metalloenzyme Catalytic Cycles
Amount £1,131,075 (GBP)
Funding ID BB/X002292/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 03/2023 
End 12/2025
 
Title Nanosecond transient IR spectrometer 
Description We have developed an infrared microscope using a tuneable QCL source for the purpose of measuring nanosecond-millisecond kinetics of metalloenzymes in solution. The instrument interfaces with an electrochemical cell using minigrid electrodes allowing electrocatalytic reactions of metalloenzymes to be studied. Reactions are initiated by a ns visible light trigger. 
Type Of Material Improvements to research infrastructure 
Year Produced 2022 
Provided To Others? No  
Impact Creation of the method has led to follow-on funding from BBSRC as noted elsewhere. 
 
Description Max-IV Sweden 
Organisation Max IV Laboratory
Country Sweden 
Sector Academic/University 
PI Contribution Collaborative X-ray spectroscopy beamtime, where material and sample environments were prepared and provided by the Leicester research team.
Collaborator Contribution Beamtime access to the Balder beamline at Max-IV synchrotron.
Impact This is an interdisciplinary collaboration between beamline physicists and engineers at Max-IV, biochemists, molecular biologists, and chemists at the University of Leicester. Publications are in progress for open access publication, and preliminary findings have been reported at UK conferences.
Start Year 2024
 
Description SpitFire Laser Loan 
Organisation Rutherford Appleton Laboratory
Department Central Laser Facility
Country United Kingdom 
Sector Academic/University 
PI Contribution Experimental design expertise, with collaboration formed during during competitively-awarded experimental time at the ULTRA facility (several publications in progress).
Collaborator Contribution Long-term loan of an ultrafast laser system and optical tables in order to set up a complementary research facility at the University of Leicester.
Impact A total of six weeks of collaborative experimental time have been awarded as a result of this collaboration. Multidisciplinary research spanning EPSRC, STFC, and BBSRC.
Start Year 2023
 
Description Diamond Light Source PEER Review Panel 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Joined Peer Review Panel 5 (from March 2024), assessing user applications to Diamond Light Source and taking part in allocation of beamtime.
Year(s) Of Engagement Activity 2024
URL https://www.diamond.ac.uk/Users/Apply-for-Beamtime/Peer-Review.html
 
Description Membership of Royal Society of Chemistry Committee 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Membership of committee for Inorganic Biochemistry Discussion Group, responsible for awarding prizes, conference organization, and promotion of bioinorganic chemistry within the UK and globally. Part of Royal Society of Chemistry.
Year(s) Of Engagement Activity 2023,2024
 
Description School visits (Leicestershire) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Online and in-person delivery of research-themed talks to local schools, 6 talks to approx. 30 students each, lead to a discussion about my career in science and spectroscopy-themed activity.
Year(s) Of Engagement Activity 2021,2022,2023,2024,2025